Lsi04G020870 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCAAAACGACATCGTACAAGGGGGTGCTGAGCTGAGAGACTAAACCCTCTTCCGTCGTTTCGTTACAGTTCTGACCGAAACTCAGAAACGTTACTGCCGGAATCTTTATTCATGTCGGGGGTTTTCCGATCAGTCCACCGGCAGATTCGATCATCTTACAGTAAAATCCTTACACGCCGATTATGGCGACGCCATTGTTCGCCTTCACGAAGTACCGTCATCTCAACATCACTCTTCACCAGGCCATTTGTTTCCGCCGCCGATCCCATATCTCCCTTCGATGCCATCACTCTCAGAGTACTTCGTAACGAGATCGAGTACCAGTCCGATTACGCTCCTCCCCATCAGGTTCACCGACTATTCTTTTTCCTCCTTCTTTCGATCCATTTCCTCGTCCTACATTTTGCAATTTGTTTCCCCTAATTTCCTTCAATTTGCTGCTGCGGAATTTTACAGCCTGCAACGACGTTCAATTCATTTACGGTTGAAGATCGACCGGGGATGCAGTGGATCATGCTGAAAGGGAAATTTGGGGACACTGAAGATATTAAAATTGAAGCGACGATGTTTGATGGCTGTGAATCTGTTCCCAAACTTGGAGACGATAGTGATGATGAAGAAGACCTCCGTCTTCATATTAGCGTGCTTGTTGACATTTCCAAGGGGGATGGTTCTGAAGATTTGGAGTTCGTTTGCTCGGCATGGCCTGATTCTTTGGAGATTCAGAAACTATATGTACTTAAACGAGATAGTATGCTTGCAAGACCCTATATGGGGCCTGATTTTAGGTATGGCTTATCTCAAATTCTAAGTTACACTTCCTTTCTGTGAATTTCTAGCTGCTTTGTCCTCTTTTGTTGATTAATTACAGATTACTTGCTCATTTTGGCTTGATTTTAGGATGTCTAATATGGCTGCCATAATATGTTGCCCCGATAAGTGACCTATGCAATTGTGAAGTTCAAAGTCCCTCAAATAATTTCATCGCTTTTCGATTAGGCGATTCACAATTTAGGGCTAAGAAGCACGGATACGAATATGACATATGGCAACACACCAATTTTTTCTTTTTAAATTTAGGACATTGACACAATAAGGACACTTTACTAAAATATACATTTTTAAACTAGAAGGAAACTAAAAGTCAATGAGTTTATGCTTTTATATGCTTAAATAATTAGTTTGATGTATTTTGCTTGCAAAATTTATTATTTTTGTCATATATGTGCCTACTTAGTATACTTACCAAGTTTTTGATGCATGTCAAACAAATGTTGGTCCTAGTTTGACCTTGTATAACTAGTGTCTAACACATCTATTGTACTAACAAGTGTCGGATACATCTCCAACACGTGTCGGAGTGTCCAACTGTCCGACACATGTTGGATAGTTGGACACTCTGCGTGTCGGACACGGATACGCTAGCCAAACTAAAGTGTCTTTGAAACACTTTTTAAAGCGCTTAAAAAGGCATTCCAAATCAATTATGTTGAGGATTTGAGGTGACTTTGGGCGAGAAACAAGGTGACCTAGGGTCATCTCGCCTTTGGTTAAGTCAAGGTAAGCGTCTTCAAGAAGGCCCTTGCCCGACTGCGCATTCGTTAGCGCACCCAAATATATTGAATATTTTATATATTTTTGTGTCTTTACTATTTTGTATTAATATTTAAGACTTTACAATGTATGCTTCATATATATTATTTATTCATTTATTGCACCTTGATTTACTAATGCCTCTCTTGCCTTGAGGCTTGAGGTGCACCTTGAGCTTTGAAACACTGTCAGGCCCTTAGTTAAACGAAGTTAAGGATTAAGCTTCTTTGTGCTCTAACTCCTGTTGTCTGCTAATGGTTTTTGTTAAATTCAGGAAATTGAGTGGTGGAATTCAGACGAAATTTCGGGAGTTCTTAGCAGAAAGGAGGATAGATAAGGAGCTCGCTGTATTTTTGCATGAATATATGATGAACAAAGACAGATGTGAACTTATTCGATGGTTGGGAACTGTCAAGTCTTTTGTGGAAAGATAAATCATACGCTTTTTTGGCACCATCAAACATAGTTTTTACCATTTTTAAGGTATTCAACATTTTGTTTTTCTTCCTTTTTCTATAATCAGATGCTAACCATAGTTCATCAATCATGATTAATTTTAACATATGCACAGCTGTTTTCAATTTTGGGGTCAATGTTGTCTTAATGAAAAGAAGAGGTACAAAAAGGTAAAGGAAAATTAGACAGTTGAGTGATTACAAATAGGTAGAACTTAGTGCCTTTGGTAATTACAAATGGTCTCTACCAGTTGGCCAAGAACACCCCAAAAACGGGGAAAACTTAGTTACAACTTTGAACTTACAAAAGAGCCTTGAAAATTGGTCCTAGTGAAATCATTATAAGAAATGACTGTCACTGTTGTTTCCCCAGATTACTACTGGTTATATGGTGCAAACTATTTGATTGTCTGCATGTGATGTTTGTTATCAATGTTGCTTGGCTGCTATTGCTTTACTGCAATTATTATCTTTAGGAAACACAAATCATGTCATGGATTGGTATAAAGATTTTTTAGGCCATGTTTGATAACCCTTTGATTTTTTTG CTCAAAACGACATCGTACAAGGGGGTGCTGAGCTGAGAGACTAAACCCTCTTCCGTCGTTTCGTTACAGTTCTGACCGAAACTCAGAAACGTTACTGCCGGAATCTTTATTCATGTCGGGGGTTTTCCGATCAGTCCACCGGCAGATTCGATCATCTTACAGTAAAATCCTTACACGCCGATTATGGCGACGCCATTGTTCGCCTTCACGAAGTACCGTCATCTCAACATCACTCTTCACCAGGCCATTTGTTTCCGCCGCCGATCCCATATCTCCCTTCGATGCCATCACTCTCAGAGTACTTCGTAACGAGATCGAGTACCAGTCCGATTACGCTCCTCCCCATCAGCCTGCAACGACGTTCAATTCATTTACGGTTGAAGATCGACCGGGGATGCAGTGGATCATGCTGAAAGGGAAATTTGGGGACACTGAAGATATTAAAATTGAAGCGACGATGTTTGATGGCTGTGAATCTGTTCCCAAACTTGGAGACGATAGTGATGATGAAGAAGACCTCCGTCTTCATATTAGCGTGCTTGTTGACATTTCCAAGGGGGATGGTTCTGAAGATTTGGAGTTCGTTTGCTCGGCATGGCCTGATTCTTTGGAGATTCAGAAACTATATGTACTTAAACGAGATAGTATGCTTGCAAGACCCTATATGGGGCCTGATTTTAGGAAATTGAGTGGTGGAATTCAGACGAAATTTCGGGAGTTCTTAGCAGAAAGGAGGATAGATAAGGAGCTCGCTGTATTTTTGCATGAATATATGATGAACAAAGACAGATGTGAACTTATTCGATGGTTGGGAACTGTCAAGTCTTTTGTGGAAAGATAAATCATACGCTTTTTTGGCACCATCAAACATAGTTTTTACCATTTTTAAGGTATTCAACATTTTGTTTTTCTTCCTTTTTCTATAATCAGATGCTAACCATAGTTCATCAATCATGATTAATTTTAACATATGCACAGCTGTTTTCAATTTTGGGGTCAATGTTGTCTTAATGAAAAGAAGAGGTACAAAAAGGTAAAGGAAAATTAGACAGTTGAGTGATTACAAATAGGTAGAACTTAGTGCCTTTGGTAATTACAAATGGTCTCTACCAGTTGGCCAAGAACACCCCAAAAACGGGGAAAACTTAGTTACAACTTTGAACTTACAAAAGAGCCTTGAAAATTGGTCCTAGTGAAATCATTATAAGAAATGACTGTCACTGTTGTTTCCCCAGATTACTACTGGTTATATGGTGCAAACTATTTGATTGTCTGCATGTGATGTTTGTTATCAATGTTGCTTGGCTGCTATTGCTTTACTGCAATTATTATCTTTAGGAAACACAAATCATGTCATGGATTGGTATAAAGATTTTTTAGGCCATGTTTGATAACCCTTTGATTTTTTTG ATGTCGGGGGTTTTCCGATCAGTCCACCGGCAGATTCGATCATCTTACAGTAAAATCCTTACACGCCGATTATGGCGACGCCATTGTTCGCCTTCACGAAGTACCGTCATCTCAACATCACTCTTCACCAGGCCATTTGTTTCCGCCGCCGATCCCATATCTCCCTTCGATGCCATCACTCTCAGAGTACTTCGTAACGAGATCGAGTACCAGTCCGATTACGCTCCTCCCCATCAGCCTGCAACGACGTTCAATTCATTTACGGTTGAAGATCGACCGGGGATGCAGTGGATCATGCTGAAAGGGAAATTTGGGGACACTGAAGATATTAAAATTGAAGCGACGATGTTTGATGGCTGTGAATCTGTTCCCAAACTTGGAGACGATAGTGATGATGAAGAAGACCTCCGTCTTCATATTAGCGTGCTTGTTGACATTTCCAAGGGGGATGGTTCTGAAGATTTGGAGTTCGTTTGCTCGGCATGGCCTGATTCTTTGGAGATTCAGAAACTATATGTACTTAAACGAGATAGTATGCTTGCAAGACCCTATATGGGGCCTGATTTTAGGAAATTGAGTGGTGGAATTCAGACGAAATTTCGGGAGTTCTTAGCAGAAAGGAGGATAGATAAGGAGCTCGCTGTATTTTTGCATGAATATATGATGAACAAAGACAGATGTGAACTTATTCGATGGTTGGGAACTGTCAAGTCTTTTGTGGAAAGATAA MSGVFRSVHRQIRSSYSKILTRRLWRRHCSPSRSTVISTSLFTRPFVSAADPISPFDAITLRVLRNEIEYQSDYAPPHQPATTFNSFTVEDRPGMQWIMLKGKFGDTEDIKIEATMFDGCESVPKLGDDSDDEEDLRLHISVLVDISKGDGSEDLEFVCSAWPDSLEIQKLYVLKRDSMLARPYMGPDFRKLSGGIQTKFREFLAERRIDKELAVFLHEYMMNKDRCELIRWLGTVKSFVER Homology
BLAST of Lsi04G020870 vs. ExPASy Swiss-Prot
Match: Q8W487 (Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g39795 PE=1 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 7.6e-15 Identity = 74/247 (29.96%), Postives = 109/247 (44.13%), Query Frame = 0
BLAST of Lsi04G020870 vs. ExPASy Swiss-Prot
Match: O22288 (Uncharacterized protein At2g39790, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g39790 PE=3 SV=2) HSP 1 Score: 63.2 bits (152), Expect = 4.8e-09 Identity = 45/156 (28.85%), Postives = 74/156 (47.44%), Query Frame = 0
BLAST of Lsi04G020870 vs. ExPASy TrEMBL
Match: A0A6J1FEC0 (mitochondrial acidic protein mam33-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443189 PE=4 SV=1) HSP 1 Score: 433.7 bits (1114), Expect = 5.0e-118 Identity = 213/242 (88.02%), Postives = 224/242 (92.56%), Query Frame = 0
BLAST of Lsi04G020870 vs. ExPASy TrEMBL
Match: A0A1S3BUU9 (uncharacterized protein At2g39795, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493767 PE=4 SV=1) HSP 1 Score: 429.1 bits (1102), Expect = 1.2e-116 Identity = 211/242 (87.19%), Postives = 219/242 (90.50%), Query Frame = 0
BLAST of Lsi04G020870 vs. ExPASy TrEMBL
Match: A0A0A0L152 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652120 PE=4 SV=1) HSP 1 Score: 429.1 bits (1102), Expect = 1.2e-116 Identity = 210/242 (86.78%), Postives = 218/242 (90.08%), Query Frame = 0
BLAST of Lsi04G020870 vs. ExPASy TrEMBL
Match: A0A6J1D8I6 (uncharacterized protein At2g39795, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111018319 PE=4 SV=1) HSP 1 Score: 427.9 bits (1099), Expect = 2.7e-116 Identity = 205/242 (84.71%), Postives = 223/242 (92.15%), Query Frame = 0
BLAST of Lsi04G020870 vs. ExPASy TrEMBL
Match: A0A6J1FPL2 (uncharacterized protein At2g39795, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111445825 PE=4 SV=1) HSP 1 Score: 420.6 bits (1080), Expect = 4.4e-114 Identity = 208/242 (85.95%), Postives = 220/242 (90.91%), Query Frame = 0
BLAST of Lsi04G020870 vs. NCBI nr
Match: XP_038896995.1 (uncharacterized protein At2g39795, mitochondrial [Benincasa hispida] >XP_038896996.1 uncharacterized protein At2g39795, mitochondrial [Benincasa hispida]) HSP 1 Score: 462.6 bits (1189), Expect = 2.1e-126 Identity = 223/242 (92.15%), Postives = 233/242 (96.28%), Query Frame = 0
BLAST of Lsi04G020870 vs. NCBI nr
Match: KAG7024431.1 (hypothetical protein SDJN02_13246 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 438.0 bits (1125), Expect = 5.5e-119 Identity = 215/242 (88.84%), Postives = 225/242 (92.98%), Query Frame = 0
BLAST of Lsi04G020870 vs. NCBI nr
Match: XP_023534978.1 (mitochondrial acidic protein mam33-like [Cucurbita pepo subsp. pepo] >XP_023534979.1 mitochondrial acidic protein mam33-like [Cucurbita pepo subsp. pepo] >XP_023534980.1 mitochondrial acidic protein mam33-like [Cucurbita pepo subsp. pepo] >XP_023534981.1 mitochondrial acidic protein mam33-like [Cucurbita pepo subsp. pepo] >XP_023534982.1 mitochondrial acidic protein mam33-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 435.3 bits (1118), Expect = 3.5e-118 Identity = 213/242 (88.02%), Postives = 225/242 (92.98%), Query Frame = 0
BLAST of Lsi04G020870 vs. NCBI nr
Match: XP_022936658.1 (mitochondrial acidic protein mam33-like isoform X1 [Cucurbita moschata] >XP_022936659.1 mitochondrial acidic protein mam33-like isoform X1 [Cucurbita moschata] >XP_022936660.1 mitochondrial acidic protein mam33-like isoform X1 [Cucurbita moschata] >XP_022936661.1 mitochondrial acidic protein mam33-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 433.7 bits (1114), Expect = 1.0e-117 Identity = 213/242 (88.02%), Postives = 224/242 (92.56%), Query Frame = 0
BLAST of Lsi04G020870 vs. NCBI nr
Match: KAG6591546.1 (hypothetical protein SDJN03_13892, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 431.4 bits (1108), Expect = 5.1e-117 Identity = 212/242 (87.60%), Postives = 223/242 (92.15%), Query Frame = 0
BLAST of Lsi04G020870 vs. TAIR 10
Match: AT4G31930.1 (Mitochondrial glycoprotein family protein ) HSP 1 Score: 246.1 bits (627), Expect = 2.8e-65 Identity = 131/233 (56.22%), Postives = 164/233 (70.39%), Query Frame = 0
BLAST of Lsi04G020870 vs. TAIR 10
Match: AT1G15870.1 (Mitochondrial glycoprotein family protein ) HSP 1 Score: 196.4 bits (498), Expect = 2.6e-50 Identity = 112/248 (45.16%), Postives = 156/248 (62.90%), Query Frame = 0
BLAST of Lsi04G020870 vs. TAIR 10
Match: AT1G80720.1 (Mitochondrial glycoprotein family protein ) HSP 1 Score: 189.5 bits (480), Expect = 3.1e-48 Identity = 95/189 (50.26%), Postives = 125/189 (66.14%), Query Frame = 0
BLAST of Lsi04G020870 vs. TAIR 10
Match: AT5G05990.1 (Mitochondrial glycoprotein family protein ) HSP 1 Score: 96.3 bits (238), Expect = 3.6e-20 Identity = 73/236 (30.93%), Postives = 116/236 (49.15%), Query Frame = 0
BLAST of Lsi04G020870 vs. TAIR 10
Match: AT5G02050.1 (Mitochondrial glycoprotein family protein ) HSP 1 Score: 84.7 bits (208), Expect = 1.1e-16 Identity = 75/254 (29.53%), Postives = 116/254 (45.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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