Lsi04G020860 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G020860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger protein 1-like
Location	chr04: 28065646 .. 28066272 (+)
RNA-Seq Expression	Lsi04G020860
Synteny	Lsi04G020860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCCCACACCGACCGGAACCCATTTTCCGGCGACGGCGAAGAAGACGATGAGAAAGAAATTACCGGCGAATTTTCCGACGACCGGAGCAGCCTTTTGGATCTTCAACTCTCATCAAATTCTTCAGATTCAACAACAAAACCCAGAATTTTCTCATGTAATTATTGCCAAAGAAAATTCTTCAGCTCCCAAGCTTTGGGAGGTCATCAAAATGCCCACAAAAGAGAGAGGACTTTAGCCAAGCGAGTCCAAAAATTTGATTGGGCGGCGGCGGCGGCGATTCCACTTCACGGCGGCGCGTTTGATCGACGGTCCTCGTTGGGAATTCACGCGCACTCTCAGCAAATTCAGAAGCCAGCTGTCGGATTGTTTTTTGGTGGGGCCGGGCCTAGTTCTCAATTATGGCCAAGGCCGTTGTTTTTGGGTCAACAGCCGGCGGTCGGGCGGTTGACGGCGGAGGGCGGTGGCCGGGATTTTGGAAGATATGATGACGTGGCAGGATGGGCGGCGATTGGAAGCTCAAACGCGGGTAATGAGAGTAGTAATAATGTTAATATTGTTCATTCTCAGACCAAACAGGATCAGGATCAGTCCAATTTCCTTGATTTGTCTCTTAAACTCTAA

mRNA sequence

ATGGAATCCCACACCGACCGGAACCCATTTTCCGGCGACGGCGAAGAAGACGATGAGAAAGAAATTACCGGCGAATTTTCCGACGACCGGAGCAGCCTTTTGGATCTTCAACTCTCATCAAATTCTTCAGATTCAACAACAAAACCCAGAATTTTCTCATGTAATTATTGCCAAAGAAAATTCTTCAGCTCCCAAGCTTTGGGAGGTCATCAAAATGCCCACAAAAGAGAGAGGACTTTAGCCAAGCGAGTCCAAAAATTTGATTGGGCGGCGGCGGCGGCGATTCCACTTCACGGCGGCGCGTTTGATCGACGGTCCTCGTTGGGAATTCACGCGCACTCTCAGCAAATTCAGAAGCCAGCTGTCGGATTGTTTTTTGGTGGGGCCGGGCCTAGTTCTCAATTATGGCCAAGGCCGTTGTTTTTGGGTCAACAGCCGGCGGTCGGGCGGTTGACGGCGGAGGGCGGTGGCCGGGATTTTGGAAGATATGATGACGTGGCAGGATGGGCGGCGATTGGAAGCTCAAACGCGGGTAATGAGAGTAGTAATAATGTTAATATTGTTCATTCTCAGACCAAACAGGATCAGGATCAGTCCAATTTCCTTGATTTGTCTCTTAAACTCTAA

Coding sequence (CDS)

ATGGAATCCCACACCGACCGGAACCCATTTTCCGGCGACGGCGAAGAAGACGATGAGAAAGAAATTACCGGCGAATTTTCCGACGACCGGAGCAGCCTTTTGGATCTTCAACTCTCATCAAATTCTTCAGATTCAACAACAAAACCCAGAATTTTCTCATGTAATTATTGCCAAAGAAAATTCTTCAGCTCCCAAGCTTTGGGAGGTCATCAAAATGCCCACAAAAGAGAGAGGACTTTAGCCAAGCGAGTCCAAAAATTTGATTGGGCGGCGGCGGCGGCGATTCCACTTCACGGCGGCGCGTTTGATCGACGGTCCTCGTTGGGAATTCACGCGCACTCTCAGCAAATTCAGAAGCCAGCTGTCGGATTGTTTTTTGGTGGGGCCGGGCCTAGTTCTCAATTATGGCCAAGGCCGTTGTTTTTGGGTCAACAGCCGGCGGTCGGGCGGTTGACGGCGGAGGGCGGTGGCCGGGATTTTGGAAGATATGATGACGTGGCAGGATGGGCGGCGATTGGAAGCTCAAACGCGGGTAATGAGAGTAGTAATAATGTTAATATTGTTCATTCTCAGACCAAACAGGATCAGGATCAGTCCAATTTCCTTGATTTGTCTCTTAAACTCTAA

Protein sequence

MESHTDRNPFSGDGEEDDEKEITGEFSDDRSSLLDLQLSSNSSDSTTKPRIFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHSQQIQKPAVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSNAGNESSNNVNIVHSQTKQDQDQSNFLDLSLKL

Homology

[Close]

BLAST of Lsi04G020860 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 81/228 (35.53%), Postives = 116/228 (50.88%), Query Frame = 0


Query: 14  GEEDDEKEIT----GEFSDDRSSLLDLQLSSNSSDS--------TTKPRIFSCNYCQRKF 73
           G +D E  +T    G  +    +L+D   +S+SS S           PR+FSCNYCQRKF
Sbjct: 18  GHQDLELGLTLLSRGTATSSELNLIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKF 77

Query: 74  FSSQALGGHQNAHKRERTLAKRVQKFD--------------------WAAAAAIPLHGGA 133
           +SSQALGGHQNAHKRERTLAKR Q +                     +A+ A++PLH G+
Sbjct: 78  YSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSRFASMASLPLH-GS 137

Query: 134 FDRRSSLGIHAHSQQIQKPAVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLTAEGGGRDFG 193
            + RS+LGI AHS  I KP+    F G   +S        + Q+P +G++  E    +  
Sbjct: 138 VNNRSTLGIQAHS-TIHKPS----FLGRQTTSLSHVFKQSIHQKPTIGKMLPEKFHLE-- 197

Query: 194 RYDDVAGWAAIGSSNAGNESSNNVNIVHSQTKQ-DQDQSNFLDLSLKL 209
                      G++N+   ++    I H ++ Q D +Q   +DL+LKL
Sbjct: 198 ---------VAGNNNSNMVAAKLERIGHFKSNQEDHNQFKKIDLTLKL 228

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BLAST of Lsi04G020860 vs. ExPASy Swiss-Prot
Match: Q39262 (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.2e-17
Identity = 75/223 (33.63%), Postives = 109/223 (48.88%), Query Frame = 0


Query: 16  EDDEKEITG--------EFSDDRSSLLDLQLSSNSSDSTTKPRIFSCNYCQRKFFSSQAL 75
           ED+E+++          +  DD +S++      N S ++T+ ++FSCNYCQR F+SSQAL
Sbjct: 23  EDEERDVHNSSHELNLIDCIDDTTSIV------NESTTSTEQKLFSCNYCQRTFYSSQAL 82

Query: 76  GGHQNAHKRERTLAKRVQKFDWAAAA--------AIPLHGGAFDRRSSLGIHAHSQQIQK 135
           GGHQNAHKRERTLAKR Q+   +A+A         +P H G ++   SLGI AHS   + 
Sbjct: 83  GGHQNAHKRERTLAKRGQRMAASASAFGHPYGFSPLPFH-GQYNNHRSLGIQAHSISHKL 142

Query: 136 PAVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSNAGN 195
            +   F G  G  +  W R L   QQPA+G+  +            +   +    SN  +
Sbjct: 143 SSYNGFGGHYGQIN--WSR-LPFDQQPAIGKFPSMDNFHHHHHQMMMMAPSVNSRSNNID 202

Query: 196 ESSNNVNIVHSQTKQDQ--------------DQSNFLDLSLKL 209
             SN   ++      +Q              ++   LDLSLKL
Sbjct: 203 SPSNTGRVLEGSPTLEQWHGDKGLLLSTSHHEEQQKLDLSLKL 235

[Close]

BLAST of Lsi04G020860 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 57/119 (47.90%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 28  DDRSSLLDLQLSSNSSDS----------TTKPRIFSCNYCQRKFFSSQALGGHQNAHKRE 87
           D  SS L L LSS S  S          +   R+FSCNYCQRKF+SSQALGGHQNAHKRE
Sbjct: 51  DLESSSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRE 110

Query: 88  RTLAKRVQKF-------------DWAAAA------AIPLHGGAFDRRSS---LGIHAHS 115
           RTLAKR  +              ++AAAA       +PLHG      +S   LGI AHS
Sbjct: 111 RTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGNGNMTSFRTLGIRAHS 169

[Close]

BLAST of Lsi04G020860 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-13
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 39 SSNSSDSTTKPRIFSCNYCQRKFFSSQALGGHQNAHKRERTLAKR 84
          S+NSS    +PR+FSCNYCQRKF+SSQALGGHQNAHK ERTLAK+
Sbjct: 39 STNSSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKK 83

[Close]

BLAST of Lsi04G020860 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-13
Identity = 51/112 (45.54%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 9   PFSGDGEEDDEKEITGEFSDDRSSLLDLQLSSNSSDST------TKPRIFSCNYCQRKFF 68
           P S  GE    ++++   S+  S  LDL+L+   +D T        PR+FSCNYC+RKF+
Sbjct: 12  PASRGGEASSNQDLSKPESNHVS--LDLKLNDTFNDDTKSTKCEANPRVFSCNYCRRKFY 71

Query: 69  SSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHS 115
           SSQALGGHQNAHKRERT+AKR              H       SSLG+ AHS
Sbjct: 72  SSQALGGHQNAHKRERTMAKRAMHMGRMFGHH---HRPYTYTSSSLGMQAHS 118

[Close]

BLAST of Lsi04G020860 vs. ExPASy TrEMBL
Match: A0A5A7VC97 (Zinc finger protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003190 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 7.1e-89
Identity = 182/216 (84.26%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MESHTDRNPFSGDGEEDDEKEITGEFSDDRSSLLDLQLSS-NSSDSTTKPRIFSCNYCQR 60
           MESHTD NPFSG+GEEDDEK    EFS++RSSLL+LQLSS NSSDST KPRIFSCNYCQR
Sbjct: 1   MESHTDGNPFSGEGEEDDEK----EFSEERSSLLELQLSSNNSSDSTNKPRIFSCNYCQR 60

Query: 61  KFFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHSQQIQK 120
           KFFSSQALGGHQNAHKRERTLAKRVQKFDW  AAAIPLHGGAFDRRSSLG+HAHSQQIQK
Sbjct: 61  KFFSSQALGGHQNAHKRERTLAKRVQKFDW--AAAIPLHGGAFDRRSSLGLHAHSQQIQK 120

Query: 121 -PAVGLFFGGAGPS--SQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSN 180
            PAVGLFFGGAGPS  SQLWPRP+F+GQQPAVGRL AE GGR+FGRYDDVA W AIG+SN
Sbjct: 121 PPAVGLFFGGAGPSSGSQLWPRPMFMGQQPAVGRLMAELGGRNFGRYDDVAEWTAIGTSN 180

Query: 181 AGNES----SNNVNIVHSQTKQDQDQSNFLDLSLKL 209
           AGNES    +NN NIVHSQT+QD+DQ+NFLDLSLKL
Sbjct: 181 AGNESRNNNNNNSNIVHSQTQQDKDQTNFLDLSLKL 210

[Close]

BLAST of Lsi04G020860 vs. ExPASy TrEMBL
Match: A0A6J1F839 (zinc finger protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111443188 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 7.1e-89
Identity = 179/208 (86.06%), Postives = 189/208 (90.87%), Query Frame = 0


Query: 1   MESHTDRNPFSGDGEEDDEKEITGEFSDDRSSLLDLQLSSNSSDSTTKPRIFSCNYCQRK 60
           ME  TDRNP SGDGEEDDE+E   E SDDRSSLLDLQLSSNSSD+TTKPR+FSCNYCQRK
Sbjct: 42  MEPLTDRNPLSGDGEEDDERE-PAELSDDRSSLLDLQLSSNSSDATTKPRVFSCNYCQRK 101

Query: 61  FFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHSQQIQKP 120
           FFSSQALGGHQNAHKRERTLAKRVQ+FDW   AAIPLHGGAFDRR SLGIHAHSQQIQKP
Sbjct: 102 FFSSQALGGHQNAHKRERTLAKRVQRFDW--GAAIPLHGGAFDRR-SLGIHAHSQQIQKP 161

Query: 121 AVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSNAGNE 180
            VG FF G GP+SQLWPRPLF+GQQPAVGRLT E GGR+FGR+DDVAGW AIGSSNAGNE
Sbjct: 162 -VG-FFSGPGPTSQLWPRPLFMGQQPAVGRLTPELGGRNFGRFDDVAGWPAIGSSNAGNE 221

Query: 181 SSNNVNIVHSQTKQDQDQSNFLDLSLKL 209
            SNNV+IVHSQTKQDQDQ+NFLDLSLKL
Sbjct: 222 RSNNVSIVHSQTKQDQDQTNFLDLSLKL 243

[Close]

BLAST of Lsi04G020860 vs. ExPASy TrEMBL
Match: A0A1S3BVD7 (zinc finger protein 1-like OS=Cucumis melo OX=3656 GN=LOC103493904 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 7.1e-89
Identity = 182/216 (84.26%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MESHTDRNPFSGDGEEDDEKEITGEFSDDRSSLLDLQLSS-NSSDSTTKPRIFSCNYCQR 60
           MESHTD NPFSG+GEEDDEK    EFS++RSSLL+LQLSS NSSDST KPRIFSCNYCQR
Sbjct: 1   MESHTDGNPFSGEGEEDDEK----EFSEERSSLLELQLSSNNSSDSTNKPRIFSCNYCQR 60

Query: 61  KFFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHSQQIQK 120
           KFFSSQALGGHQNAHKRERTLAKRVQKFDW  AAAIPLHGGAFDRRSSLG+HAHSQQIQK
Sbjct: 61  KFFSSQALGGHQNAHKRERTLAKRVQKFDW--AAAIPLHGGAFDRRSSLGLHAHSQQIQK 120

Query: 121 -PAVGLFFGGAGPS--SQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSN 180
            PAVGLFFGGAGPS  SQLWPRP+F+GQQPAVGRL AE GGR+FGRYDDVA W AIG+SN
Sbjct: 121 PPAVGLFFGGAGPSSGSQLWPRPMFMGQQPAVGRLMAELGGRNFGRYDDVAEWTAIGTSN 180

Query: 181 AGNES----SNNVNIVHSQTKQDQDQSNFLDLSLKL 209
           AGNES    +NN NIVHSQT+QD+DQ+NFLDLSLKL
Sbjct: 181 AGNESRNNNNNNSNIVHSQTQQDKDQTNFLDLSLKL 210

[Close]

BLAST of Lsi04G020860 vs. ExPASy TrEMBL
Match: A0A6J1IG94 (zinc finger protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111476654 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.3e-87
Identity = 177/208 (85.10%), Postives = 188/208 (90.38%), Query Frame = 0


Query: 1   MESHTDRNPFSGDGEEDDEKEITGEFSDDRSSLLDLQLSSNSSDSTTKPRIFSCNYCQRK 60
           ME  TDRNP SGDGEEDD++E   E SDDRSSLLDLQLSSNSSD+TTKPR+FSCNYCQRK
Sbjct: 41  MEPLTDRNPLSGDGEEDDDRE-PAELSDDRSSLLDLQLSSNSSDATTKPRVFSCNYCQRK 100

Query: 61  FFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHSQQIQKP 120
           FFSSQALGGHQNAHKRERTLAKRVQ+FDW   AAIPLHGGAFDRR SLGIHAHSQQIQKP
Sbjct: 101 FFSSQALGGHQNAHKRERTLAKRVQRFDW--GAAIPLHGGAFDRR-SLGIHAHSQQIQKP 160

Query: 121 AVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSNAGNE 180
            VG FF G GP+SQLWPR LF+GQQPAVGRLT E GGR+FGR+DDVAGW AIGSSNAGNE
Sbjct: 161 -VG-FFSGPGPTSQLWPRTLFMGQQPAVGRLTPELGGRNFGRFDDVAGWPAIGSSNAGNE 220

Query: 181 SSNNVNIVHSQTKQDQDQSNFLDLSLKL 209
            SNNV+IVHSQTKQDQDQ+NFLDLSLKL
Sbjct: 221 RSNNVSIVHSQTKQDQDQTNFLDLSLKL 242

[Close]

BLAST of Lsi04G020860 vs. ExPASy TrEMBL
Match: A0A0A0L4C3 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G652110 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.5e-83
Identity = 178/216 (82.41%), Postives = 192/216 (88.89%), Query Frame = 0


Query: 1   MESHTDRNPFSGD--GEEDDEKEITGEFSDDRSSLLDLQLSSNSSD-STTKPRIFSCNYC 60
           MESHTD NPFSG+  GEEDD    +GEFS++RSSLL+LQLSSNSSD ST KPRIFSCNYC
Sbjct: 1   MESHTDGNPFSGELAGEEDD----SGEFSEERSSLLELQLSSNSSDHSTNKPRIFSCNYC 60

Query: 61  QRKFFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRR--SSLGIHAHSQ 120
           QRKFFSSQALGGHQNAHKRERTLAKRVQKFDW AAAAIPLHGGAFDRR  SSLG+HAHSQ
Sbjct: 61  QRKFFSSQALGGHQNAHKRERTLAKRVQKFDW-AAAAIPLHGGAFDRRSSSSLGLHAHSQ 120

Query: 121 QIQK-PAVGLFFGG-AGPS-SQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAI 180
           QIQK P VGLFFGG A PS SQLWPRP+F+GQQPAVGRL AE GGR+FGRYDDVA W AI
Sbjct: 121 QIQKPPTVGLFFGGAAAPSGSQLWPRPMFMGQQPAVGRLPAELGGRNFGRYDDVAEWTAI 180

Query: 181 GSSNAGNESSNNVNIVHSQTKQDQDQSNFLDLSLKL 209
           G+SNAGN  +NN NIVHSQTKQ++DQ+NFLDLSLKL
Sbjct: 181 GTSNAGN--NNNSNIVHSQTKQEKDQNNFLDLSLKL 209

[Close]

BLAST of Lsi04G020860 vs. NCBI nr
Match: XP_038899458.1 (zinc finger protein 1-like [Benincasa hispida])

HSP 1 Score: 386.3 bits (991), Expect = 1.6e-103
Identity = 199/211 (94.31%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MESHTDRNPFSGDGEEDDEKEITGEFSDDRSSLLDLQLSSNSSDSTTKPRIFSCNYCQRK 60
           MES TDRNPFSGDGEEDDEKEITGEFSDDRSSLL+LQLSSNS DSTTKPRIFSCNYCQRK
Sbjct: 1   MESQTDRNPFSGDGEEDDEKEITGEFSDDRSSLLELQLSSNSPDSTTKPRIFSCNYCQRK 60

Query: 61  FFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAA--IPLHGGAFDRRSSLGIHAHSQQIQ 120
           FFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAA  IPLHGGAFDRRSSLGIHAHSQQIQ
Sbjct: 61  FFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAASIPLHGGAFDRRSSLGIHAHSQQIQ 120

Query: 121 KPAVGLFFGGAGP-SSQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSNA 180
           KPAVGLFFGGAGP SSQLWPRPLF+GQQPAVGRLTAE GGR+FGR+D+VAGWAAIGSSNA
Sbjct: 121 KPAVGLFFGGAGPASSQLWPRPLFMGQQPAVGRLTAEVGGRNFGRFDEVAGWAAIGSSNA 180

Query: 181 GNESSNNVNIVHSQTKQDQDQSNFLDLSLKL 209
           GNES+NNVNIVHSQTKQDQDQSNFLDLSLKL
Sbjct: 181 GNESNNNVNIVHSQTKQDQDQSNFLDLSLKL 211

[Close]

BLAST of Lsi04G020860 vs. NCBI nr
Match: KAG7024430.1 (Zinc finger protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.0 bits (868), Expect = 3.0e-89
Identity = 180/208 (86.54%), Postives = 190/208 (91.35%), Query Frame = 0


Query: 1   MESHTDRNPFSGDGEEDDEKEITGEFSDDRSSLLDLQLSSNSSDSTTKPRIFSCNYCQRK 60
           ME  TDRNP SGDGEEDDE+E T E SDDRSSLLDLQLSSNSSD+TTKPR+FSCNYCQRK
Sbjct: 1   MEPLTDRNPLSGDGEEDDERE-TAELSDDRSSLLDLQLSSNSSDATTKPRVFSCNYCQRK 60

Query: 61  FFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHSQQIQKP 120
           FFSSQALGGHQNAHKRERTLAKRVQ+FDW   AAIPLHGGAFDRR SLGIHAHSQQIQKP
Sbjct: 61  FFSSQALGGHQNAHKRERTLAKRVQRFDW--GAAIPLHGGAFDRR-SLGIHAHSQQIQKP 120

Query: 121 AVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSNAGNE 180
            VG FF G GP+SQLWPRPLF+GQQPAVGRLT E GGR+FGR+DDVAGW AIGSSNAGNE
Sbjct: 121 -VG-FFSGPGPTSQLWPRPLFMGQQPAVGRLTPELGGRNFGRFDDVAGWPAIGSSNAGNE 180

Query: 181 SSNNVNIVHSQTKQDQDQSNFLDLSLKL 209
            SNNV+IVHSQTKQDQDQ+NFLDLSLKL
Sbjct: 181 RSNNVSIVHSQTKQDQDQTNFLDLSLKL 202

[Close]

BLAST of Lsi04G020860 vs. NCBI nr
Match: KAG6591545.1 (Zinc finger protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 337.4 bits (864), Expect = 8.6e-89
Identity = 179/208 (86.06%), Postives = 190/208 (91.35%), Query Frame = 0


Query: 1   MESHTDRNPFSGDGEEDDEKEITGEFSDDRSSLLDLQLSSNSSDSTTKPRIFSCNYCQRK 60
           ME  TDRNP SGDGEE+DE+E T E SDDRSSLLDLQLSSNSSD+TTKPR+FSCNYCQRK
Sbjct: 1   MEPLTDRNPLSGDGEEEDERE-TAELSDDRSSLLDLQLSSNSSDATTKPRVFSCNYCQRK 60

Query: 61  FFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHSQQIQKP 120
           FFSSQALGGHQNAHKRERTLAKRVQ+FDW   AAIPLHGGAFDRR SLGIHAHSQQIQKP
Sbjct: 61  FFSSQALGGHQNAHKRERTLAKRVQRFDW--GAAIPLHGGAFDRR-SLGIHAHSQQIQKP 120

Query: 121 AVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSNAGNE 180
            VG FF G GP+SQLWPRPLF+GQQPAVGRLT E GGR+FGR+DDVAGW AIGSSNAGNE
Sbjct: 121 -VG-FFSGPGPTSQLWPRPLFMGQQPAVGRLTPELGGRNFGRFDDVAGWPAIGSSNAGNE 180

Query: 181 SSNNVNIVHSQTKQDQDQSNFLDLSLKL 209
            SNNV+IVHSQTKQDQDQ+NFLDLSLKL
Sbjct: 181 RSNNVSIVHSQTKQDQDQTNFLDLSLKL 202

[Close]

BLAST of Lsi04G020860 vs. NCBI nr
Match: XP_008453080.1 (PREDICTED: zinc finger protein 1-like [Cucumis melo] >KAA0064597.1 zinc finger protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.5e-88
Identity = 182/216 (84.26%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MESHTDRNPFSGDGEEDDEKEITGEFSDDRSSLLDLQLSS-NSSDSTTKPRIFSCNYCQR 60
           MESHTD NPFSG+GEEDDEK    EFS++RSSLL+LQLSS NSSDST KPRIFSCNYCQR
Sbjct: 1   MESHTDGNPFSGEGEEDDEK----EFSEERSSLLELQLSSNNSSDSTNKPRIFSCNYCQR 60

Query: 61  KFFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHSQQIQK 120
           KFFSSQALGGHQNAHKRERTLAKRVQKFDW  AAAIPLHGGAFDRRSSLG+HAHSQQIQK
Sbjct: 61  KFFSSQALGGHQNAHKRERTLAKRVQKFDW--AAAIPLHGGAFDRRSSLGLHAHSQQIQK 120

Query: 121 -PAVGLFFGGAGPS--SQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSN 180
            PAVGLFFGGAGPS  SQLWPRP+F+GQQPAVGRL AE GGR+FGRYDDVA W AIG+SN
Sbjct: 121 PPAVGLFFGGAGPSSGSQLWPRPMFMGQQPAVGRLMAELGGRNFGRYDDVAEWTAIGTSN 180

Query: 181 AGNES----SNNVNIVHSQTKQDQDQSNFLDLSLKL 209
           AGNES    +NN NIVHSQT+QD+DQ+NFLDLSLKL
Sbjct: 181 AGNESRNNNNNNSNIVHSQTQQDKDQTNFLDLSLKL 210

[Close]

BLAST of Lsi04G020860 vs. NCBI nr
Match: XP_022936656.1 (zinc finger protein 1-like [Cucurbita moschata])

HSP 1 Score: 336.7 bits (862), Expect = 1.5e-88
Identity = 179/208 (86.06%), Postives = 189/208 (90.87%), Query Frame = 0


Query: 1   MESHTDRNPFSGDGEEDDEKEITGEFSDDRSSLLDLQLSSNSSDSTTKPRIFSCNYCQRK 60
           ME  TDRNP SGDGEEDDE+E   E SDDRSSLLDLQLSSNSSD+TTKPR+FSCNYCQRK
Sbjct: 42  MEPLTDRNPLSGDGEEDDERE-PAELSDDRSSLLDLQLSSNSSDATTKPRVFSCNYCQRK 101

Query: 61  FFSSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHSQQIQKP 120
           FFSSQALGGHQNAHKRERTLAKRVQ+FDW   AAIPLHGGAFDRR SLGIHAHSQQIQKP
Sbjct: 102 FFSSQALGGHQNAHKRERTLAKRVQRFDW--GAAIPLHGGAFDRR-SLGIHAHSQQIQKP 161

Query: 121 AVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSNAGNE 180
            VG FF G GP+SQLWPRPLF+GQQPAVGRLT E GGR+FGR+DDVAGW AIGSSNAGNE
Sbjct: 162 -VG-FFSGPGPTSQLWPRPLFMGQQPAVGRLTPELGGRNFGRFDDVAGWPAIGSSNAGNE 221

Query: 181 SSNNVNIVHSQTKQDQDQSNFLDLSLKL 209
            SNNV+IVHSQTKQDQDQ+NFLDLSLKL
Sbjct: 222 RSNNVSIVHSQTKQDQDQTNFLDLSLKL 243

[Close]

BLAST of Lsi04G020860 vs. TAIR 10
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-20
Identity = 58/121 (47.93%), Postives = 78/121 (64.46%), Query Frame = 0


Query: 40  SNSSDSTTKPRIFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRVQKFDWAAA------- 99
           S +  ++T+ ++FSCNYCQR F+SSQALGGHQNAHKRERTLAKR Q+   AAA       
Sbjct: 92  SFNGSTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMASAAAFGHPYGF 151

Query: 100 AAIPLHGGAFDRRSSLGIHAHSQQIQKPAVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLT 154
           A +P HG   +R  +LGI AHS   +  +  ++ G  G  +  W R + L QQPA+ +LT
Sbjct: 152 APVPFHGQYSNR--TLGIQAHSMSHKPSSYNVYGGEYGQIN--WSR-IPLVQQPAIAKLT 207

[Close]

BLAST of Lsi04G020860 vs. TAIR 10
Match: AT1G80730.1 (zinc-finger protein 1 )

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-19
Identity = 81/228 (35.53%), Postives = 116/228 (50.88%), Query Frame = 0


Query: 14  GEEDDEKEIT----GEFSDDRSSLLDLQLSSNSSDS--------TTKPRIFSCNYCQRKF 73
           G +D E  +T    G  +    +L+D   +S+SS S           PR+FSCNYCQRKF
Sbjct: 18  GHQDLELGLTLLSRGTATSSELNLIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKF 77

Query: 74  FSSQALGGHQNAHKRERTLAKRVQKFD--------------------WAAAAAIPLHGGA 133
           +SSQALGGHQNAHKRERTLAKR Q +                     +A+ A++PLH G+
Sbjct: 78  YSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSRFASMASLPLH-GS 137

Query: 134 FDRRSSLGIHAHSQQIQKPAVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLTAEGGGRDFG 193
            + RS+LGI AHS  I KP+    F G   +S        + Q+P +G++  E    +  
Sbjct: 138 VNNRSTLGIQAHS-TIHKPS----FLGRQTTSLSHVFKQSIHQKPTIGKMLPEKFHLE-- 197

Query: 194 RYDDVAGWAAIGSSNAGNESSNNVNIVHSQTKQ-DQDQSNFLDLSLKL 209
                      G++N+   ++    I H ++ Q D +Q   +DL+LKL
Sbjct: 198 ---------VAGNNNSNMVAAKLERIGHFKSNQEDHNQFKKIDLTLKL 228

[Close]

BLAST of Lsi04G020860 vs. TAIR 10
Match: AT5G25160.1 (zinc finger protein 3 )

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-18
Identity = 75/223 (33.63%), Postives = 109/223 (48.88%), Query Frame = 0


Query: 16  EDDEKEITG--------EFSDDRSSLLDLQLSSNSSDSTTKPRIFSCNYCQRKFFSSQAL 75
           ED+E+++          +  DD +S++      N S ++T+ ++FSCNYCQR F+SSQAL
Sbjct: 23  EDEERDVHNSSHELNLIDCIDDTTSIV------NESTTSTEQKLFSCNYCQRTFYSSQAL 82

Query: 76  GGHQNAHKRERTLAKRVQKFDWAAAA--------AIPLHGGAFDRRSSLGIHAHSQQIQK 135
           GGHQNAHKRERTLAKR Q+   +A+A         +P H G ++   SLGI AHS   + 
Sbjct: 83  GGHQNAHKRERTLAKRGQRMAASASAFGHPYGFSPLPFH-GQYNNHRSLGIQAHSISHKL 142

Query: 136 PAVGLFFGGAGPSSQLWPRPLFLGQQPAVGRLTAEGGGRDFGRYDDVAGWAAIGSSNAGN 195
            +   F G  G  +  W R L   QQPA+G+  +            +   +    SN  +
Sbjct: 143 SSYNGFGGHYGQIN--WSR-LPFDQQPAIGKFPSMDNFHHHHHQMMMMAPSVNSRSNNID 202

Query: 196 ESSNNVNIVHSQTKQDQ--------------DQSNFLDLSLKL 209
             SN   ++      +Q              ++   LDLSLKL
Sbjct: 203 SPSNTGRVLEGSPTLEQWHGDKGLLLSTSHHEEQQKLDLSLKL 235

[Close]

BLAST of Lsi04G020860 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 )

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-16
Identity = 57/119 (47.90%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 28  DDRSSLLDLQLSSNSSDS----------TTKPRIFSCNYCQRKFFSSQALGGHQNAHKRE 87
           D  SS L L LSS S  S          +   R+FSCNYCQRKF+SSQALGGHQNAHKRE
Sbjct: 51  DLESSSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRE 110

Query: 88  RTLAKRVQKF-------------DWAAAA------AIPLHGGAFDRRSS---LGIHAHS 115
           RTLAKR  +              ++AAAA       +PLHG      +S   LGI AHS
Sbjct: 111 RTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGNGNMTSFRTLGIRAHS 169

[Close]

BLAST of Lsi04G020860 vs. TAIR 10
Match: AT1G24625.1 (zinc finger protein 7 )

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-14
Identity = 51/112 (45.54%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 9   PFSGDGEEDDEKEITGEFSDDRSSLLDLQLSSNSSDST------TKPRIFSCNYCQRKFF 68
           P S  GE    ++++   S+  S  LDL+L+   +D T        PR+FSCNYC+RKF+
Sbjct: 12  PASRGGEASSNQDLSKPESNHVS--LDLKLNDTFNDDTKSTKCEANPRVFSCNYCRRKFY 71

Query: 69  SSQALGGHQNAHKRERTLAKRVQKFDWAAAAAIPLHGGAFDRRSSLGIHAHS 115
           SSQALGGHQNAHKRERT+AKR              H       SSLG+ AHS
Sbjct: 72  SSQALGGHQNAHKRERTMAKRAMHMGRMFGHH---HRPYTYTSSSLGMQAHS 118

The following BLAST results are available for this feature:

BLAST of Lsi04G020860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42485	1.1e-17	35.53	Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1	[more]
Q39262	9.2e-17	33.63	Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1	[more]
Q39263	1.7e-15	47.90	Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2	[more]
Q39261	2.8e-13	77.78	Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1	[more]
Q39266	3.6e-13	45.54	Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1	[more]

BLAST of Lsi04G020860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VC97	7.1e-89	84.26	Zinc finger protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A6J1F839	7.1e-89	86.06	zinc finger protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111443188 PE=4 SV...	[more]
A0A1S3BVD7	7.1e-89	84.26	zinc finger protein 1-like OS=Cucumis melo OX=3656 GN=LOC103493904 PE=4 SV=1	[more]
A0A6J1IG94	1.3e-87	85.10	zinc finger protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111476654 PE=4 SV=1	[more]
A0A0A0L4C3	4.5e-83	82.41	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G652110 P...	[more]

BLAST of Lsi04G020860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899458.1	1.6e-103	94.31	zinc finger protein 1-like [Benincasa hispida]	[more]
KAG7024430.1	3.0e-89	86.54	Zinc finger protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6591545.1	8.6e-89	86.06	Zinc finger protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008453080.1	1.5e-88	84.26	PREDICTED: zinc finger protein 1-like [Cucumis melo] >KAA0064597.1 zinc finger p...	[more]
XP_022936656.1	1.5e-88	86.06	zinc finger protein 1-like [Cucurbita moschata]	[more]

BLAST of Lsi04G020860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10970.1	1.1e-20	47.93	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G80730.1	7.7e-19	35.53	zinc-finger protein 1	[more]
AT5G25160.1	6.5e-18	33.63	zinc finger protein 3	[more]
AT1G66140.1	1.2e-16	47.90	zinc finger protein 4	[more]
AT1G24625.1	2.6e-14	45.54	zinc finger protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 27..92 e-value: 3.6E-7 score: 31.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
IPR044246	Zinc finger protein 3-like	PANTHER	PTHR47287	C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN	coord: 37..208
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 54..74
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 52..79 score: 11.343733
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 48..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G020860.1	Lsi04G020860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009788	negative regulation of abscisic acid-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane