Lsi04G020240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G020240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	UBP1-associated protein 2C-like
Location	chr04: 27332269 .. 27336040 (+)
RNA-Seq Expression	Lsi04G020240
Synteny	Lsi04G020240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTACCGGAGTATGAGCAGTCCAACATTTTACCAACCTCTGTTCAGGAATTTTTAGGTTTTTATTAGGGTTTACGCATACTCTTCCCTGTGTTATCCACTTCGTTCCGTACTCCGCCATGGATGTCGTTAAGAAGCGAAAGGTCGACGAAAATGGCGTTCTTCTTGCCGACTCCGATCATTCAGTCTTAAAACTTTCAACGGAAGATGCTCGCAAGATCATCGAGCGGTTCACCCCGGATCAACTCATCGACATTCTTCAAGACGCGGTTTCCCGCCATTCCGATGTGCTTGACGCTGTACGTTCCGTTGCTGATCACGATGTTGCTCAGCGTAAGCTTTTCGTTCGTGGGCTTGGTTGGGATACTTCAACCGAGGGCCTCCGGAAGCTCTTCTCCGTTTATGGAGAACTTGAAGAAGCCGTCGTTATCTTAGATAAAGCTACGGGGAAGTCGAAAGGGTATGGTTTTGTTACGTTTAAGCACGTGGATGGTGCTCTATTGGCTTTGAAAGAACCGAGTAAAACGATTGATGGGCGTGTTACTGTGACACAACTCGCAGCCGCGGGGAATACTGGGTCTAACTCGAATGCTGCCGATGTGTCGTTGAGGAAAATTTACGTAGCTAATGTGCCGATTGATATGGCTGCTGATAAATTGCTTGCGCATTTTGCTTTGTATGGGGAGATTGAGGAAGGGCCTTTAGGGTTCGATAAGCAGACGGGGAAGTGTAGGGGTTATGCATTGTTTGTCTACAAGAAGCCGGAGGGTGCGCAAGCGGCGTTGGTGGATCCGATTAAGACAATAGAAGGGCGGCAAGTTAGCTGTAAATATGCCAACGATGGGAAAAAGGGAAAGCCTGGAGGTGCTGGGCCTGATGGTGTTCAGGGCTCTGTAGGTAATCAAGGTAGTGTGCATGGAGATGGGATGAATATGCCTTCGCAAGCTCCGTTGCCTGGTTCAATGGGTGGACAGTATGGGGGACCTGGCAGCATTGGATCATACGGTGGGTTTTCGGGAGGCCTCCATGCTCCTCCACAGCTCGGTTATAATCCGCTTAACTCGTCGTTGGGTGGTCCAGGGCCAGGCTTGTCTTCTATGGGTAATCAGACACATAATTCTCTGAATGGTACTGGTGGGTATGGTGGCGGGTTTGGCAGCGGCACTTACGGTGGTGGATATGGTGGTCCTGGGTCATCTGGCTACTCTGGTATGGGCGTTGGTGCAGCCGGCGGACTTGGAAGTGCCACTGCTGGAACCGGACCTGGTTTGTACAGGTTACCCCCGAACTCTGGTGGAATGCCGTCCAATGGTTATCCAGATAGTTTGCCATATAGTTTATCGTCTTCGGCTGGTTATCCAAACCCGCATCAACATACGACAGGTACATCACCAGCGCCTCGAGTGCCGCCTGGAGGCATGTACCCTAACGTGCCGCCTTTTTATTGAGGTAATTTTCGATCATGTAGTTTATGATCACTGCTGTTGTGTTGACCATTCTTTTTCCATCTTTAATGGTGGTTCGTTTCTTTGGTTACTATTTGATGGTTTTAAGTTTACGTGTTCACTAACTTGTCTGTTGCATCTCTGGGATTTTATTTCATTTGTCCATTGTAATTTGTGCAATAGTACCCAGTTTATTGTTTTTGTTGCATTGACATCATTCAATTTTTATACATCATTCTTGAATTACTTTTGTTCCTTAACATCTCATGTTTTAACATTTTCAGATGCTATTGTAAACGTGTATTAGTTCGAATCCTTCAGGAGATGGTTGTTCTTTTTTGGTAGTGCTCGTGCTATTTTGCCAAGTAGTAGAATTTTGCTTTTAGTGCCCATTCTTATTGGTCTATAGTAGTTTTTAGCATTATTTTTGTTTCATTTTGATGATCTTAGTTGTTCTCAATAGGGGTAGGGGTAGATATTATTTTTTCAAAATTTTATTGCATCCCACCTTTTTGGTATGGGGAAGGTTGGCAATATGCAAGTCCTATCTCTGAGACGATGAGTAGAGGGACGACTTATCTGTCTTTTCACTCTCATTTTGATGCTTACTCCGTGACTTCTCTATGTTTCTTTGACATTTGTTGTTTTGAAAACTTTCCTTTGCCCAGCCGCAATCTTCTATGTGGCAGGCTTCCTCGTTTCATTGATTTGAATGCATTTTTCCTTTCCAGTGGTGTCTTTTTCTTTGTCTAGAATCTTATGCTTGGCAGTGGCATGATTGTTAAGCAGTGCCCTCTTTTATGACTTTTCTTTATTGTATGCTCTTGTATTGTTTTATTTTTCTCAATGAAAGTTCAGTTTACCATAAAAAATAATAGTTAATTGTTAATTAGTATATGATGGAAAACGTAATTTTTTTTTGAGTGAGAAAAAAGCCTGCGTCACTTTTCTAATTGTTACTTGGGGATTTTTATTTTTCAATCCTCATGCTCTTCGGTGCATTGCTCCCTACATATTTTCTTTGGTCTCTTTTCCTCTCTCCTTCCTACCTTTTGTGTCTTTGTTGATGGCTTTCACGTGTTTGAGATTGAGCTAGGGAATGACTGTTCATTTGAGCTTTCCAATTTGAATTTGAATAATTCTTCTGGGGGGTTACTTCTCAGGGCATAAAGCAGAACTTTTAAAAAAATTGCTTTTCTTTTGAAGTTTTCTGTTCCTTCTCTTGTAGAAACTGTGTTCTATTTATATGATTTGAGATCCCTATATGGTCAATCTATTTCAAGTGTTTTTCTGGATGGTTTCCATATCTCACAAGGTCTTTTGCTGCCTTTATCTGTTAGTTGTTTGTTGCAGCGTTTCCCTTGAACATTAAGAGCTCTATAAACTGTGTTCTTCTTGCACGTGCACCATTCATTTTTGTCATTCTATTTTTACTAGCGATTAGTTATTTTTTAATTTCATATGTTTGTTATTGCTATTCAGTTAATGGCCTACGCATCTATTGAATTTGGTAGTTTATACACGTTTTTGTTTTATTTTTTTGTTCTAGACCATTAAATTTTAGTCCTTCACGAAGTTTGTACCTTGTGTTGTATTTTCTTTCTATAATTGGCAATAACTTTGTCTATGGATGACAGACATAATTGAAATTAATCAACGTCTTGAAATTTATGTTGAATTTGTAGCTTTTAACGACTAGGAAGAAACTTGTATTTTTGTACTCTTCAATGTGTGTGTATTCACATGGTATGGAAGTTTGTTTGGCTATCTTGCTGTTGTTTCTATTAATTTGATCTTGAATTAGACCAGAGTCCCTTTGCATCATGAGGTGATATGTTGTAGTGAGTTCAACATGGGTGTTTGATTCAATTTATCTCGTTGGATGCAGATGCTTTATGTGCTTCACCTGATTGCGTAGAATGCCGACTATCAATCTGATTTGGTGAATGTATTGGTTGTGCTTTTGTGACCTCTTTTCTAGATGTATTTATGAGTGCTTGTAGAAAGAAATCATGCAATGGTGTTTTTGCACTTGTCAACAATTAATATGCTTTTGGTTTTCCCCCCCTCCATATTAGTCTAATAAGTGATCACTGATTTCTGTTCCTTTTTCTTTCTGGCTGGGGCTTAAGTTCCTGGATAGTTTTGTATGGATGGCCACTTGTTCTTGTCTATTCAGTAAAGCTTCACTACAAATTTGAACAGTTGGGAAGTGCATTATGCGCTTATGGTTATTTATGTAATTATGTGTGCTGGCTGTTGAAGAGAGACTTGCCTTTTGCGCATGTGGTCGAATTAATGTTCCAGGCTTGTAATTGCACGTGCACT

mRNA sequence

AACTACCGGAGTATGAGCAGTCCAACATTTTACCAACCTCTGTTCAGGAATTTTTAGGTTTTTATTAGGGTTTACGCATACTCTTCCCTGTGTTATCCACTTCGTTCCGTACTCCGCCATGGATGTCGTTAAGAAGCGAAAGGTCGACGAAAATGGCGTTCTTCTTGCCGACTCCGATCATTCAGTCTTAAAACTTTCAACGGAAGATGCTCGCAAGATCATCGAGCGGTTCACCCCGGATCAACTCATCGACATTCTTCAAGACGCGGTTTCCCGCCATTCCGATGTGCTTGACGCTGTACGTTCCGTTGCTGATCACGATGTTGCTCAGCGTAAGCTTTTCGTTCGTGGGCTTGGTTGGGATACTTCAACCGAGGGCCTCCGGAAGCTCTTCTCCGTTTATGGAGAACTTGAAGAAGCCGTCGTTATCTTAGATAAAGCTACGGGGAAGTCGAAAGGGTATGGTTTTGTTACGTTTAAGCACGTGGATGGTGCTCTATTGGCTTTGAAAGAACCGAGTAAAACGATTGATGGGCGTGTTACTGTGACACAACTCGCAGCCGCGGGGAATACTGGGTCTAACTCGAATGCTGCCGATGTGTCGTTGAGGAAAATTTACGTAGCTAATGTGCCGATTGATATGGCTGCTGATAAATTGCTTGCGCATTTTGCTTTGTATGGGGAGATTGAGGAAGGGCCTTTAGGGTTCGATAAGCAGACGGGGAAGTGTAGGGGTTATGCATTGTTTGTCTACAAGAAGCCGGAGGGTGCGCAAGCGGCGTTGGTGGATCCGATTAAGACAATAGAAGGGCGGCAAGTTAGCTGTAAATATGCCAACGATGGGAAAAAGGGAAAGCCTGGAGGTGCTGGGCCTGATGGTGTTCAGGGCTCTGTAGGTAATCAAGGTAGTGTGCATGGAGATGGGATGAATATGCCTTCGCAAGCTCCGTTGCCTGGTTCAATGGGTGGACAGTATGGGGGACCTGGCAGCATTGGATCATACGGTGGGTTTTCGGGAGGCCTCCATGCTCCTCCACAGCTCGGTTATAATCCGCTTAACTCGTCGTTGGGTGGTCCAGGGCCAGGCTTGTCTTCTATGGGTAATCAGACACATAATTCTCTGAATGGTACTGGTGGGTATGGTGGCGGGTTTGGCAGCGGCACTTACGGTGGTGGATATGGTGGTCCTGGGTCATCTGGCTACTCTGGTATGGGCGTTGGTGCAGCCGGCGGACTTGGAAGTGCCACTGCTGGAACCGGACCTGGTTTGTACAGGTTACCCCCGAACTCTGGTGGAATGCCGTCCAATGGTTATCCAGATAGTTTGCCATATAGTTTATCGTCTTCGGCTGGTTATCCAAACCCGCATCAACATACGACAGGTACATCACCAGCGCCTCGAGTGCCGCCTGGAGGCATGTACCCTAACGTGCCGCCTTTTTATTGAATGCTTTATGTGCTTCACCTGATTGCGTAGAATGCCGACTATCAATCTGATTTGGTGAATGTATTGGTTGTGCTTTTGTGACCTCTTTTCTAGATGTATTTATGAGTGCTTGTAGAAAGAAATCATGCAATGGTGTTTTTGCACTTGTCAACAATTAATATGCTTTTGGTTTTCCCCCCCTCCATATTAGTCTAATAAGTGATCACTGATTTCTGTTCCTTTTTCTTTCTGGCTGGGGCTTAAGTTCCTGGATAGTTTTGTATGGATGGCCACTTGTTCTTGTCTATTCAGTAAAGCTTCACTACAAATTTGAACAGTTGGGAAGTGCATTATGCGCTTATGGTTATTTATGTAATTATGTGTGCTGGCTGTTGAAGAGAGACTTGCCTTTTGCGCATGTGGTCGAATTAATGTTCCAGGCTTGTAATTGCACGTGCACT

Coding sequence (CDS)

ATGGATGTCGTTAAGAAGCGAAAGGTCGACGAAAATGGCGTTCTTCTTGCCGACTCCGATCATTCAGTCTTAAAACTTTCAACGGAAGATGCTCGCAAGATCATCGAGCGGTTCACCCCGGATCAACTCATCGACATTCTTCAAGACGCGGTTTCCCGCCATTCCGATGTGCTTGACGCTGTACGTTCCGTTGCTGATCACGATGTTGCTCAGCGTAAGCTTTTCGTTCGTGGGCTTGGTTGGGATACTTCAACCGAGGGCCTCCGGAAGCTCTTCTCCGTTTATGGAGAACTTGAAGAAGCCGTCGTTATCTTAGATAAAGCTACGGGGAAGTCGAAAGGGTATGGTTTTGTTACGTTTAAGCACGTGGATGGTGCTCTATTGGCTTTGAAAGAACCGAGTAAAACGATTGATGGGCGTGTTACTGTGACACAACTCGCAGCCGCGGGGAATACTGGGTCTAACTCGAATGCTGCCGATGTGTCGTTGAGGAAAATTTACGTAGCTAATGTGCCGATTGATATGGCTGCTGATAAATTGCTTGCGCATTTTGCTTTGTATGGGGAGATTGAGGAAGGGCCTTTAGGGTTCGATAAGCAGACGGGGAAGTGTAGGGGTTATGCATTGTTTGTCTACAAGAAGCCGGAGGGTGCGCAAGCGGCGTTGGTGGATCCGATTAAGACAATAGAAGGGCGGCAAGTTAGCTGTAAATATGCCAACGATGGGAAAAAGGGAAAGCCTGGAGGTGCTGGGCCTGATGGTGTTCAGGGCTCTGTAGGTAATCAAGGTAGTGTGCATGGAGATGGGATGAATATGCCTTCGCAAGCTCCGTTGCCTGGTTCAATGGGTGGACAGTATGGGGGACCTGGCAGCATTGGATCATACGGTGGGTTTTCGGGAGGCCTCCATGCTCCTCCACAGCTCGGTTATAATCCGCTTAACTCGTCGTTGGGTGGTCCAGGGCCAGGCTTGTCTTCTATGGGTAATCAGACACATAATTCTCTGAATGGTACTGGTGGGTATGGTGGCGGGTTTGGCAGCGGCACTTACGGTGGTGGATATGGTGGTCCTGGGTCATCTGGCTACTCTGGTATGGGCGTTGGTGCAGCCGGCGGACTTGGAAGTGCCACTGCTGGAACCGGACCTGGTTTGTACAGGTTACCCCCGAACTCTGGTGGAATGCCGTCCAATGGTTATCCAGATAGTTTGCCATATAGTTTATCGTCTTCGGCTGGTTATCCAAACCCGCATCAACATACGACAGGTACATCACCAGCGCCTCGAGTGCCGCCTGGAGGCATGTACCCTAACGTGCCGCCTTTTTATTGA

Protein sequence

MDVVKKRKVDENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDAVRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTFKHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKLLAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYANDGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSGGLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSSGYSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYPNPHQHTTGTSPAPRVPPGGMYPNVPPFY

Homology

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BLAST of Lsi04G020240 vs. ExPASy Swiss-Prot
Match: Q9LKA4 (UBP1-associated protein 2C OS=Arabidopsis thaliana OX=3702 GN=UBA2C PE=2 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 7.7e-122
Identity = 264/448 (58.93%), Postives = 309/448 (68.97%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVL---KLSTEDARKIIERFTPDQLIDILQDAVSRHSDV 60
           MD++KKRK+DENG  L  +    +   +LS +DARKIIERFT DQL+D+LQ+A+ RH DV
Sbjct: 1   MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60

Query: 61  LDAVRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGF 120
           L++VR  AD D++QRKLF+RGL  DT+TEGLR LFS YG+LEEA+VILDK TGKSKGYGF
Sbjct: 61  LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120

Query: 121 VTFKHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAA 180
           VTF HVDGALLALKEPSK IDGRVTVTQLAA+GN G+ S  AD+S+RKIYVANVP DM A
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180

Query: 181 DKLLAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCK 240
           D+LL HF  YG++EEGPLGFDK TGK RG+ALFVYK  EGAQAAL DP+K I+G+ ++CK
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240

Query: 241 YANDGKK-GKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYG 300
            A DGKK GKPG   P    G  G+ G VHG+GM M   A       G YG  G I +YG
Sbjct: 241 LAVDGKKGGKPG--MPQAQDGGSGH-GHVHGEGMGMVRPA-------GPYGAAGGISAYG 300

Query: 301 GFSGGLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGG 360
           G+SGG   PP    N  +SS+G                  G+ GYGG +      GGYGG
Sbjct: 301 GYSGG---PPAHHMNSTHSSMG-----------------VGSAGYGGHY------GGYGG 360

Query: 361 PGSSG-YSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMP-SNGYPDSLPYSLSSSAGYP 420
           PG +G Y G+G G  G       GTG G YR+PP+S  MP   GYP+S  Y LSSSAGYP
Sbjct: 361 PGGTGVYGGLGGGYGG------PGTGSGQYRMPPSS--MPGGGGYPESGHYGLSSSAGYP 404

Query: 421 NPHQHTTGTSPAPRVPPGGMYPNVPPFY 443
             H    GTSP PRVP GGMYPN PP Y
Sbjct: 421 GQHHQAVGTSPVPRVPHGGMYPNGPPNY 404

[Close]

BLAST of Lsi04G020240 vs. ExPASy Swiss-Prot
Match: Q9LJ04 (RNA-binding protein P OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-P PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.0e-49
Identity = 160/397 (40.30%), Postives = 206/397 (51.89%), Query Frame = 0


Query: 10  DENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDAVRSVADHDV 69
           DE+G    + +    +   +  + ++  F  DQL+++L  A   H DVL AV   AD D 
Sbjct: 94  DEDGEGEGEEEEEAAERDADSIQALLNSFPKDQLVELLSAAALSHEDVLTAVHRAADADP 153

Query: 70  AQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTFKHVDGALLA 129
           A RK+FV GLGWD + E L + FS YGE+E+  V+ D+ATGK KGYGF+ F    GA  A
Sbjct: 154 ALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGARAA 213

Query: 130 LKEPSKTIDGRVTVTQLAAAGNT---GSNSNAA----------------DVSLRKIYVAN 189
           L+EP K I  R T  QLA+ G     G  +N A                + + RKI+V+N
Sbjct: 214 LREPQKKIGNRTTACQLASVGPVPPGGMATNPAPAVAPAPAQLALPPVSEYTQRKIFVSN 273

Query: 190 VPIDMAADKLLAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIE 249
           V  D+   KLL  F+ YGEIEEGPLG DK TGK +G+ALFVYK  + A+ AL +P K  E
Sbjct: 274 VGADIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAKKALQEPHKQFE 333

Query: 250 GRQVSCKYANDGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGP- 309
           G  + C+ A DG K   GG G  G+ G+ G  G   G G        LPG+  G +  P 
Sbjct: 334 GVVLHCQKAIDGPKPNKGG-GLGGLYGA-GTSGGRKGAGGYGAHSHSLPGAAVGGHVMPS 393

Query: 310 --GSIGSYGGFSGGLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGS 369
              S+ S  G +GG    P LG   L + L   G GL  + N      NG+G    G  +
Sbjct: 394 PVSSLTSLPGVAGGPGVNPALG-QALTAILASQGGGL-GLNNILGVGANGSGLPNPGASA 453

Query: 370 GTYGGGYGG-PGSSGYSGMGVGAAGGLGSATAGTGPG 384
           G    G  G PG+ GY G G G  GG GS   G GPG
Sbjct: 454 GLGSSGLPGMPGAGGYLG-GYGGGGGYGSTPPG-GPG 484

[Close]

BLAST of Lsi04G020240 vs. ExPASy Swiss-Prot
Match: O80678 (UBP1-associated protein 2B OS=Arabidopsis thaliana OX=3702 GN=UBA2B PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.9e-46
Identity = 137/364 (37.64%), Postives = 179/364 (49.18%), Query Frame = 0


Query: 29  EDARKIIERFTPDQLIDILQDAVSRHSDVLDAVRSVADHDVAQRKLFVRGLGWDTSTEGL 88
           E    ++E F+ DQL+ +L++A  RH DV + +R VAD D+  RK+FV GLGWDT  + L
Sbjct: 85  EPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSL 144

Query: 89  RKLFSVYGELEEAVVILDKATGKSKGYGFVTFKHVDGALLALKEPSKTIDGRVTVTQLAA 148
              F  YGE+E+   ++DK +G+SKGYGF+ FK   GA  ALK+P K I  R+T  QLA+
Sbjct: 145 IDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLAS 204

Query: 149 AGNTGSNSNAADVS-------LRKIYVANVPIDMAADKLLAHFALYGEIEEGPLGFDKQT 208
            G    N   A           RKIYV+NV  D+   KLL  F+ +GEIEEGPLG DK T
Sbjct: 205 IGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKAT 264

Query: 209 GKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYANDGKK----------------- 268
           G+ +G+ALFVY+  E A+ AL +P KT EG  + C  ANDG K                 
Sbjct: 265 GRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQHNHNSHNQNSR 324

Query: 269 ---------GKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGG--QYGGPGSIG 328
                    G PGG G      +   Q      G  + +     G+  G  Q  G   +G
Sbjct: 325 YQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQGAGLGLNQAFGQALLG 384

Query: 329 SYGGFSGGLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGG 358
           + G  S G       GY    +   G  PG  +             G GG  G G +G G
Sbjct: 385 TLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQAGYQGGYQTQQPGQGGA-GRGQHGAG 444

[Close]

BLAST of Lsi04G020240 vs. ExPASy Swiss-Prot
Match: Q9LES2 (UBP1-associated protein 2A OS=Arabidopsis thaliana OX=3702 GN=UBA2A PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-42
Identity = 147/399 (36.84%), Postives = 195/399 (48.87%), Query Frame = 0


Query: 29  EDARKIIERFTPDQLIDILQDAVSRHSDVLDAVRSVADHDVAQRKLFVRGLGWDTSTEGL 88
           E  + ++E F+ +Q++ +L++A  +H DV + +R VAD D   RK+FV GLGWDT TE L
Sbjct: 97  EPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETL 156

Query: 89  RKLFSVYGELEEAVVILDKATGKSKGYGFVTFKHVDGALLALKEPSKTIDGRVTVTQLAA 148
            + F  YGE+E+   + DK +GKSKGYGF+ +K   GA  ALK+P K I  R+T  QLA+
Sbjct: 157 IEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLAS 216

Query: 149 AGNT--GSNSNAADVSL-----------RKIYVANVPIDMAADKLLAHFALYGEIEEGPL 208
            G    G+   AA VS            +KIYV+NV  ++   KLL  F+ +GEIEEGPL
Sbjct: 217 KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPL 276

Query: 209 GFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYANDGKKGKPGGAGPDGV 268
           G DK TG+ +G+ LFVYK  E A+ AL +P KT EG  + C+ A DG   KPG       
Sbjct: 277 GLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGP--KPG------- 336

Query: 269 QGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGS-YGGFSGGLHAPPQLGYNP-- 328
                 +   H    +  +      +    YG PG  G    G   G+  P     NP  
Sbjct: 337 ------KQQQHHHNPHAYNNPRYQRNDNNGYGPPGGHGHLMAGNPAGMGGPTAQVINPAI 396

Query: 329 ---LNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSSGYSGMGVGA 388
              L + L   G GL +       +L G+ G   G      G G G P   G   M  G 
Sbjct: 397 GQALTALLASQGAGL-AFNPAIGQALLGSLGTAAGVNP---GNGVGMPTGYGTQAMAPGT 456

Query: 389 AGGLGSATAGTGPGL---YRLPPNSGGMPSNGYPDSLPY 406
             G      GT PGL   Y+ P    G  S G     PY
Sbjct: 457 MPGY-----GTQPGLQGGYQTPQPGQGGTSRGQHGVGPY 471

[Close]

BLAST of Lsi04G020240 vs. ExPASy Swiss-Prot
Match: Q9CX86 (Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus OX=10090 GN=Hnrnpa0 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-22
Identity = 96/300 (32.00%), Postives = 136/300 (45.33%), Query Frame = 0


Query: 73  KLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTFKHVDGALLALKE 132
           KLF+ GL   TS  GLR  F  +G L + VV+++  T +S+ +GFVT+ +V+ A  A+  
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67

Query: 133 PSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKLLAHFALYGEIEE 192
               +DG  TV    A     S    A   ++K++V  +  D+A   L+ HF+ +G +E+
Sbjct: 68  SPHAVDGN-TVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEK 127

Query: 193 GPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYANDGKKGKPGGAGP 252
             +  DKQ+GK RG+    ++  + A  A V     I+G +V  K A   +    GG G 
Sbjct: 128 AEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGA 187

Query: 253 ----DGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSGGLHAPPQL 312
                G  G  G  G   G G +    A   G  GG Y   G  G YG + GG       
Sbjct: 188 RAARGGRGGGRGRGGGGGGGGRDQNGLAKGGGGGGGGYNSYGGYGGYGAYGGGGGGGGSY 247

Query: 313 GYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFG----SGTYGGGYGGPGSSGYSG 365
           G +   +  GG G       +       G GG GG +G    SG Y GGYGG    GY G
Sbjct: 248 GGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSWGGRSNSGPYRGGYGG----GYGG 302

[Close]

BLAST of Lsi04G020240 vs. ExPASy TrEMBL
Match: A0A6J1FJY4 (UBP1-associated protein 2C-like OS=Cucurbita moschata OX=3662 GN=LOC111446005 PE=4 SV=1)

HSP 1 Score: 759.2 bits (1959), Expect = 9.5e-216
Identity = 394/442 (89.14%), Postives = 413/442 (93.44%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60
           MDVVKKRK+DENGV L DSD S+LKLS EDARKIIERFTPDQLIDILQDAVS HSDVLDA
Sbjct: 1   MDVVKKRKMDENGVPLTDSDDSLLKLSPEDARKIIERFTPDQLIDILQDAVSCHSDVLDA 60

Query: 61  VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF 120
           VRSVAD DVAQRKLF+RGLGWDT+T+GLRKLFS+YGELEEAVVILDKATGKSKGYGFVTF
Sbjct: 61  VRSVADQDVAQRKLFIRGLGWDTTTDGLRKLFSIYGELEEAVVILDKATGKSKGYGFVTF 120

Query: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKL 180
           KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNA DVS+RKIYVANVPIDMAADKL
Sbjct: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAPDVSMRKIYVANVPIDMAADKL 180

Query: 181 LAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN 240
           LAHF LYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIKTIEGRQVSCKYAN
Sbjct: 181 LAHFVLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIEGRQVSCKYAN 240

Query: 241 DGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSG 300
           DGKKGKPGG+GPDGVQGSVGNQG+VHGDGM MPSQAP+PGSMGGQYGGPG +GSYGGFSG
Sbjct: 241 DGKKGKPGGSGPDGVQGSVGNQGNVHGDGMGMPSQAPMPGSMGGQYGGPGGLGSYGGFSG 300

Query: 301 GLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSS 360
           GLH PPQLG+N LNSSL   GPGLSSMG+QT NSLNGTGGYGGG G G YGGGYGGPGS+
Sbjct: 301 GLHGPPQLGHNTLNSSL---GPGLSSMGSQTQNSLNGTGGYGGGLGGGPYGGGYGGPGST 360

Query: 361 GYSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYPNPHQHT 420
           G+SG+  G AGG GS+ AGTG GLYRLPPNSGG+PSNGYPDSLPYSLSSS+GY N H HT
Sbjct: 361 GFSGLSAGPAGGQGSSGAGTGSGLYRLPPNSGGVPSNGYPDSLPYSLSSSSGYLNQHPHT 420

Query: 421 TGTSPAPRVPPGGMYPNVPPFY 443
           TGTSPAPRVPPGGMYPNVPPFY
Sbjct: 421 TGTSPAPRVPPGGMYPNVPPFY 439

[Close]

BLAST of Lsi04G020240 vs. ExPASy TrEMBL
Match: A0A6J1CQ00 (UBP1-associated protein 2C-like OS=Momordica charantia OX=3673 GN=LOC111013083 PE=4 SV=1)

HSP 1 Score: 743.4 bits (1918), Expect = 5.4e-211
Identity = 393/442 (88.91%), Postives = 405/442 (91.63%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60
           MDVVKKRK+DENGVLLADSDHS LKLS EDARKIIERFTPDQLIDILQDAVSRHSDVLDA
Sbjct: 1   MDVVKKRKIDENGVLLADSDHSFLKLSPEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60

Query: 61  VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF 120
           VRSVAD DV+QRKLF+RGLGWDTSTEGLR LFS YGELEEAVVILDKATGKSKGYGFVTF
Sbjct: 61  VRSVADPDVSQRKLFIRGLGWDTSTEGLRTLFSAYGELEEAVVILDKATGKSKGYGFVTF 120

Query: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKL 180
           KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVS+RKIYVANVPIDMAADKL
Sbjct: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSMRKIYVANVPIDMAADKL 180

Query: 181 LAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN 240
           LAHF LYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCK+AN
Sbjct: 181 LAHFGLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKFAN 240

Query: 241 DGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSG 300
           DGKKGKPGGAGPDG Q SVG+QGS HGDG+ MPSQAP+PGSMGG YGGPG IGSYGGF+G
Sbjct: 241 DGKKGKPGGAGPDGAQASVGSQGSAHGDGVGMPSQAPMPGSMGGHYGGPGGIGSYGGFTG 300

Query: 301 GLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSS 360
           GLH PPQLG+NPLNSSL   GPGL SM NQ  NSLNGTGGYGGG G G Y GGYGGPG S
Sbjct: 301 GLHGPPQLGHNPLNSSLA--GPGLPSMSNQAQNSLNGTGGYGGGLG-GPYSGGYGGPGPS 360

Query: 361 GYSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYPNPHQHT 420
            +SG+G G AGGLG A AGTG GLYRLPPNS GMPSNGY DSLPYSLSSS GYPN HQ  
Sbjct: 361 SFSGLGAGTAGGLGGAAAGTGSGLYRLPPNSAGMPSNGYSDSLPYSLSSS-GYPNQHQQ- 420

Query: 421 TGTSPAPRVPPGGMYPNVPPFY 443
           TGTSPAPRVPPGGMYPNVPPFY
Sbjct: 421 TGTSPAPRVPPGGMYPNVPPFY 437

[Close]

BLAST of Lsi04G020240 vs. ExPASy TrEMBL
Match: A0A6J1IT82 (UBP1-associated protein 2C-like OS=Cucurbita maxima OX=3661 GN=LOC111480390 PE=4 SV=1)

HSP 1 Score: 742.3 bits (1915), Expect = 1.2e-210
Identity = 390/442 (88.24%), Postives = 408/442 (92.31%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60
           MDVVKKRK+DENGV L DSD S LKLS EDARKIIERFTPDQLIDILQDAVS HSDVLDA
Sbjct: 1   MDVVKKRKMDENGVPLTDSDDSSLKLSPEDARKIIERFTPDQLIDILQDAVSCHSDVLDA 60

Query: 61  VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF 120
           VRSVAD DVAQRKLF+RGLGWDT+T+GLRKLFS+YGELEEAVVILDKATGKSKGYGFVTF
Sbjct: 61  VRSVADQDVAQRKLFIRGLGWDTTTDGLRKLFSIYGELEEAVVILDKATGKSKGYGFVTF 120

Query: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKL 180
           KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNA DVS+RKIYVANVPIDMAADKL
Sbjct: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAPDVSMRKIYVANVPIDMAADKL 180

Query: 181 LAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN 240
           LAHF LYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIKTIEGRQVSCKYAN
Sbjct: 181 LAHFVLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIEGRQVSCKYAN 240

Query: 241 DGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSG 300
           DGKKGKPGG+GPDGVQGSVGNQG+VHGDGM MPSQAP+PGSMGGQYGGPG +GSYGGFSG
Sbjct: 241 DGKKGKPGGSGPDGVQGSVGNQGNVHGDGMGMPSQAPMPGSMGGQYGGPGGLGSYGGFSG 300

Query: 301 GLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSS 360
           GLH PPQLG+N LNSSL   GPGLSSMG+QT NSLNGTGGYGGG G    GG YGGPGS+
Sbjct: 301 GLHGPPQLGHNTLNSSL---GPGLSSMGSQTQNSLNGTGGYGGGLG----GGPYGGPGST 360

Query: 361 GYSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYPNPHQHT 420
           G+SG+  G AGG GS+ AGTG  LYRLPPNSGG+PSNGYPDSLPYSLSSS+GY NPH HT
Sbjct: 361 GFSGLSAGPAGGQGSSGAGTGSVLYRLPPNSGGVPSNGYPDSLPYSLSSSSGYLNPHPHT 420

Query: 421 TGTSPAPRVPPGGMYPNVPPFY 443
           TGTSPAPRV PGGMYPNVPPFY
Sbjct: 421 TGTSPAPRVTPGGMYPNVPPFY 435

[Close]

BLAST of Lsi04G020240 vs. ExPASy TrEMBL
Match: A0A0A0KYY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083660 PE=4 SV=1)

HSP 1 Score: 597.0 bits (1538), Expect = 6.2e-167
Identity = 332/448 (74.11%), Postives = 367/448 (81.92%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60
           MDV KKR++DENGV    S+ S  +++ EDARKII+RFTPDQLIDILQDAVSRH DVLDA
Sbjct: 1   MDVTKKRRMDENGV--DSSESSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLDA 60

Query: 61  VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF 120
           VRS+AD DV+QRKLF+RGL  DTSTEGLR LFS YGELEEAVVI+DKATGKSKGYGFVTF
Sbjct: 61  VRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTF 120

Query: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKL 180
           KHVDGALLALKEPSKTIDGRVTVTQLAA G +G NSNAAD+SLRKIYVANVP+DM ADKL
Sbjct: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPMDMPADKL 180

Query: 181 LAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN 240
           LAHF+LYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTI+GRQ+SCK+AN
Sbjct: 181 LAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFAN 240

Query: 241 DGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSG 300
           DGKKGKPGG GPDG Q     QG+VHGDGM M   + +PGS GGQYGGPG +GSYGGFS 
Sbjct: 241 DGKKGKPGG-GPDGNQTQGAGQGNVHGDGMPMAPPSAMPGS-GGQYGGPGGMGSYGGFSS 300

Query: 301 GLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSS 360
           GL     L ++PLNSS+   GPGLSS+G Q  +SL  +GGYGG    G YGGGYGGPGS 
Sbjct: 301 GLQGAQPLAHHPLNSSM---GPGLSSVGGQAPSSLGSSGGYGG----GPYGGGYGGPGSI 360

Query: 361 GYSGMGV------GAAGGLGSATAGTGPGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYP 420
            Y GMG       G+ GGLG   AG    LYRLP +S GMPS GYPDS  YS+SS++G+P
Sbjct: 361 -YGGMGSVGGGLGGSGGGLGG--AGGASSLYRLPQSSVGMPSGGYPDSGHYSMSSASGHP 420

Query: 421 NPHQHTTGTSPAPRVPPGGMYPNVPPFY 443
           N H    GTSPAPRVPPGGMYPNVPP+Y
Sbjct: 421 NQHHQPAGTSPAPRVPPGGMYPNVPPYY 434

[Close]

BLAST of Lsi04G020240 vs. ExPASy TrEMBL
Match: A0A6J1CND4 (UBP1-associated protein 2C OS=Momordica charantia OX=3673 GN=LOC111012853 PE=4 SV=1)

HSP 1 Score: 594.0 bits (1530), Expect = 5.3e-166
Identity = 329/448 (73.44%), Postives = 368/448 (82.14%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSV-LKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLD 60
           MD+ KKR++DENGV   DSD+S   +++ EDARKII+RFTPDQLIDILQDAVSRH DVLD
Sbjct: 1   MDLTKKRRMDENGV---DSDNSFNSRITPEDARKIIDRFTPDQLIDILQDAVSRHMDVLD 60

Query: 61  AVRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVT 120
           AVRS+AD DV+QRKLF+RGL  DTSTEGLR LFS +GELEEAVVI+DKATGKSKGYGFVT
Sbjct: 61  AVRSIADRDVSQRKLFIRGLSCDTSTEGLRSLFSAFGELEEAVVIIDKATGKSKGYGFVT 120

Query: 121 FKHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADK 180
           FKHVDGA+LALKEPSKTIDGRVTVTQLAA G +G NSNAAD+SLRKIYVANVP+DM ADK
Sbjct: 121 FKHVDGAILALKEPSKTIDGRVTVTQLAAVGISGQNSNAADLSLRKIYVANVPVDMPADK 180

Query: 181 LLAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYA 240
           LLAHF+LYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTI+GRQ+SCK+A
Sbjct: 181 LLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFA 240

Query: 241 NDGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSY-GGF 300
           NDGKKGKPGG G DG+Q  V  QG+VHGDGM M   + +PGS GGQYGGPG +GSY GGF
Sbjct: 241 NDGKKGKPGG-GQDGIQAPVAGQGNVHGDGMGMAPPSAMPGS-GGQYGGPGGMGSYGGGF 300

Query: 301 SGGLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPG 360
           S G+     LG++P+NSS+   GPGLSS+G Q  +SL  +GGYGG    G YGGGYGGPG
Sbjct: 301 SSGIQGGQPLGHHPINSSM---GPGLSSVGGQAPSSLGSSGGYGG----GPYGGGYGGPG 360

Query: 361 SSGYSGMGV--GAAGGLGSATAGTG--PGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYP 420
           SS Y GMG   G  GG G    G G    LYRLP +S GMPS GYPD   YS+SSS+G+P
Sbjct: 361 SSVYGGMGSVGGGLGGSGGGLGGVGGASSLYRLPQSSVGMPSGGYPDGGHYSMSSSSGHP 420

Query: 421 NPHQHTTGTSPAPRVPPGGMYPNVPPFY 443
           N      GTSPAPRVPPGGMYPNVPP+Y
Sbjct: 421 NQLHQQAGTSPAPRVPPGGMYPNVPPYY 436

[Close]

BLAST of Lsi04G020240 vs. NCBI nr
Match: XP_038899568.1 (UBP1-associated protein 2C-like [Benincasa hispida])

HSP 1 Score: 803.9 bits (2075), Expect = 6.9e-229
Identity = 420/443 (94.81%), Postives = 428/443 (96.61%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60
           MDVVKKRK+DENGVLL DSDHSVLKLSTEDARKIIERFT DQLIDILQDAVSRHSDVLDA
Sbjct: 1   MDVVKKRKMDENGVLLDDSDHSVLKLSTEDARKIIERFTQDQLIDILQDAVSRHSDVLDA 60

Query: 61  VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF 120
           VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF
Sbjct: 61  VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF 120

Query: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKL 180
           KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNA DVSLRKIYVANVPIDMAADKL
Sbjct: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAPDVSLRKIYVANVPIDMAADKL 180

Query: 181 LAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN 240
           L+HFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN
Sbjct: 181 LSHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN 240

Query: 241 DGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSG 300
           DGKKGKPGGAGPDGVQGSVGNQGSVHGDGM+MPSQAPLPGSMGG YGGP  IGSYGGFSG
Sbjct: 241 DGKKGKPGGAGPDGVQGSVGNQGSVHGDGMSMPSQAPLPGSMGGHYGGPVGIGSYGGFSG 300

Query: 301 GLHA-PPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGS 360
           GLHA PPQLG+NP+NSSLGGPGPGLSSMG+QTHNSLNGTGGYGGG G   YGGGYGGPGS
Sbjct: 301 GLHAPPPQLGHNPINSSLGGPGPGLSSMGSQTHNSLNGTGGYGGGLGGVPYGGGYGGPGS 360

Query: 361 SGYSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYPNPHQH 420
           SG+SGMGVGAAGGLGSATAGTG GLYRLPPNSGGMPSNGYP+SLPYSLSS AGYPN HQ 
Sbjct: 361 SGFSGMGVGAAGGLGSATAGTGSGLYRLPPNSGGMPSNGYPESLPYSLSSLAGYPNQHQQ 420

Query: 421 TTGTSPAPRVPPGGMYPNVPPFY 443
           TTGTSPAPRVPPGGMYPNVPPFY
Sbjct: 421 TTGTSPAPRVPPGGMYPNVPPFY 443

[Close]

BLAST of Lsi04G020240 vs. NCBI nr
Match: XP_022940378.1 (UBP1-associated protein 2C-like [Cucurbita moschata] >XP_022940379.1 UBP1-associated protein 2C-like [Cucurbita moschata] >XP_022940380.1 UBP1-associated protein 2C-like [Cucurbita moschata] >XP_022940381.1 UBP1-associated protein 2C-like [Cucurbita moschata])

HSP 1 Score: 759.2 bits (1959), Expect = 2.0e-215
Identity = 394/442 (89.14%), Postives = 413/442 (93.44%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60
           MDVVKKRK+DENGV L DSD S+LKLS EDARKIIERFTPDQLIDILQDAVS HSDVLDA
Sbjct: 1   MDVVKKRKMDENGVPLTDSDDSLLKLSPEDARKIIERFTPDQLIDILQDAVSCHSDVLDA 60

Query: 61  VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF 120
           VRSVAD DVAQRKLF+RGLGWDT+T+GLRKLFS+YGELEEAVVILDKATGKSKGYGFVTF
Sbjct: 61  VRSVADQDVAQRKLFIRGLGWDTTTDGLRKLFSIYGELEEAVVILDKATGKSKGYGFVTF 120

Query: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKL 180
           KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNA DVS+RKIYVANVPIDMAADKL
Sbjct: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAPDVSMRKIYVANVPIDMAADKL 180

Query: 181 LAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN 240
           LAHF LYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIKTIEGRQVSCKYAN
Sbjct: 181 LAHFVLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIEGRQVSCKYAN 240

Query: 241 DGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSG 300
           DGKKGKPGG+GPDGVQGSVGNQG+VHGDGM MPSQAP+PGSMGGQYGGPG +GSYGGFSG
Sbjct: 241 DGKKGKPGGSGPDGVQGSVGNQGNVHGDGMGMPSQAPMPGSMGGQYGGPGGLGSYGGFSG 300

Query: 301 GLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSS 360
           GLH PPQLG+N LNSSL   GPGLSSMG+QT NSLNGTGGYGGG G G YGGGYGGPGS+
Sbjct: 301 GLHGPPQLGHNTLNSSL---GPGLSSMGSQTQNSLNGTGGYGGGLGGGPYGGGYGGPGST 360

Query: 361 GYSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYPNPHQHT 420
           G+SG+  G AGG GS+ AGTG GLYRLPPNSGG+PSNGYPDSLPYSLSSS+GY N H HT
Sbjct: 361 GFSGLSAGPAGGQGSSGAGTGSGLYRLPPNSGGVPSNGYPDSLPYSLSSSSGYLNQHPHT 420

Query: 421 TGTSPAPRVPPGGMYPNVPPFY 443
           TGTSPAPRVPPGGMYPNVPPFY
Sbjct: 421 TGTSPAPRVPPGGMYPNVPPFY 439

[Close]

BLAST of Lsi04G020240 vs. NCBI nr
Match: XP_023524648.1 (UBP1-associated protein 2C-like [Cucurbita pepo subsp. pepo] >XP_023524649.1 UBP1-associated protein 2C-like [Cucurbita pepo subsp. pepo] >XP_023524650.1 UBP1-associated protein 2C-like [Cucurbita pepo subsp. pepo] >XP_023524653.1 UBP1-associated protein 2C-like [Cucurbita pepo subsp. pepo] >XP_023524654.1 UBP1-associated protein 2C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 757.3 bits (1954), Expect = 7.4e-215
Identity = 393/442 (88.91%), Postives = 412/442 (93.21%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60
           MDVVKKRK+DENGV L DSD S+LKLS EDARKIIERFTPDQLIDILQDAVS HSDVLDA
Sbjct: 1   MDVVKKRKMDENGVPLTDSDDSLLKLSPEDARKIIERFTPDQLIDILQDAVSCHSDVLDA 60

Query: 61  VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF 120
           VRSVAD DVAQRKLF+RGLGWDT+T+GLRKLFS+YGELEEAVVILDKATGKSKGYGFVTF
Sbjct: 61  VRSVADQDVAQRKLFIRGLGWDTTTDGLRKLFSIYGELEEAVVILDKATGKSKGYGFVTF 120

Query: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKL 180
           KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNA DVS+RKIYVANVPIDMAADKL
Sbjct: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAPDVSMRKIYVANVPIDMAADKL 180

Query: 181 LAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN 240
           LAHF LYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIKTIEGRQVSCKYAN
Sbjct: 181 LAHFVLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIEGRQVSCKYAN 240

Query: 241 DGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSG 300
           DGKKGKPGG+GPDGVQGSVGNQG+VHGDGM MPSQAP+PGSMGGQYGGPG +GSYGGFSG
Sbjct: 241 DGKKGKPGGSGPDGVQGSVGNQGNVHGDGMGMPSQAPMPGSMGGQYGGPGGLGSYGGFSG 300

Query: 301 GLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSS 360
           GLH PPQLG+N LNSSL   GPGLSSMG+QT NSLNGTGGYGGG G G YGGGYGGPG +
Sbjct: 301 GLHGPPQLGHNTLNSSL---GPGLSSMGSQTQNSLNGTGGYGGGLGGGPYGGGYGGPGPT 360

Query: 361 GYSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYPNPHQHT 420
           G+SG+  G AGG GS+ AGTG GLYRLPPNSGG+PSNGYPDSLPYSLSSS+GY N H HT
Sbjct: 361 GFSGLSAGPAGGQGSSGAGTGSGLYRLPPNSGGVPSNGYPDSLPYSLSSSSGYLNQHPHT 420

Query: 421 TGTSPAPRVPPGGMYPNVPPFY 443
           TGTSPAPRVPPGGMYPNVPPFY
Sbjct: 421 TGTSPAPRVPPGGMYPNVPPFY 439

[Close]

BLAST of Lsi04G020240 vs. NCBI nr
Match: KAG6607907.1 (UBP1-associated protein 2C, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037435.1 UBP1-associated protein 2C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 755.7 bits (1950), Expect = 2.2e-214
Identity = 393/442 (88.91%), Postives = 412/442 (93.21%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60
           MDVVKKRK+DENGV L DSD S+LKLS EDARKIIERFTPDQLIDILQDAVS HSDVLDA
Sbjct: 1   MDVVKKRKMDENGVPLTDSDDSLLKLSPEDARKIIERFTPDQLIDILQDAVSCHSDVLDA 60

Query: 61  VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF 120
           VRSVAD DVAQRKLF+RGLGWDT+T+GLRKLFS+YGELEEAVVILDKATGKSKGYGFVTF
Sbjct: 61  VRSVADQDVAQRKLFIRGLGWDTTTDGLRKLFSIYGELEEAVVILDKATGKSKGYGFVTF 120

Query: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKL 180
           KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNA DVS+RKIYVANVPIDMAADKL
Sbjct: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAPDVSMRKIYVANVPIDMAADKL 180

Query: 181 LAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN 240
           LAHF LYGEIEEGPLGFDKQTGKCRGYALFVYKK EGAQAALVDPIKTIEGRQVSCKYAN
Sbjct: 181 LAHFVLYGEIEEGPLGFDKQTGKCRGYALFVYKKAEGAQAALVDPIKTIEGRQVSCKYAN 240

Query: 241 DGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSG 300
           DGKKGKPG +GPDGVQGSVGNQG+VHGDGM MPSQAP+PGSMGGQYGGPG +GSYGGFSG
Sbjct: 241 DGKKGKPGVSGPDGVQGSVGNQGNVHGDGMGMPSQAPMPGSMGGQYGGPGGLGSYGGFSG 300

Query: 301 GLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSS 360
           GLH PPQLG+N LNSSL   GPGLSSMG+QT NSLNGTGGYGGG G G YGGGYGGPGS+
Sbjct: 301 GLHGPPQLGHNTLNSSL---GPGLSSMGSQTQNSLNGTGGYGGGLGGGPYGGGYGGPGST 360

Query: 361 GYSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYPNPHQHT 420
           G+SG+  G AGG GS+ AGTG GLYRLPPNSGG+PSNGYPDSLPYSLSSS+GY N H HT
Sbjct: 361 GFSGLSAGPAGGQGSSGAGTGSGLYRLPPNSGGVPSNGYPDSLPYSLSSSSGYLNQHPHT 420

Query: 421 TGTSPAPRVPPGGMYPNVPPFY 443
           TGTSPAPRVPPGGMYPNVPPFY
Sbjct: 421 TGTSPAPRVPPGGMYPNVPPFY 439

[Close]

BLAST of Lsi04G020240 vs. NCBI nr
Match: XP_022143148.1 (UBP1-associated protein 2C-like [Momordica charantia])

HSP 1 Score: 743.4 bits (1918), Expect = 1.1e-210
Identity = 393/442 (88.91%), Postives = 405/442 (91.63%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVLKLSTEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60
           MDVVKKRK+DENGVLLADSDHS LKLS EDARKIIERFTPDQLIDILQDAVSRHSDVLDA
Sbjct: 1   MDVVKKRKIDENGVLLADSDHSFLKLSPEDARKIIERFTPDQLIDILQDAVSRHSDVLDA 60

Query: 61  VRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGFVTF 120
           VRSVAD DV+QRKLF+RGLGWDTSTEGLR LFS YGELEEAVVILDKATGKSKGYGFVTF
Sbjct: 61  VRSVADPDVSQRKLFIRGLGWDTSTEGLRTLFSAYGELEEAVVILDKATGKSKGYGFVTF 120

Query: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAADKL 180
           KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVS+RKIYVANVPIDMAADKL
Sbjct: 121 KHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSMRKIYVANVPIDMAADKL 180

Query: 181 LAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYAN 240
           LAHF LYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCK+AN
Sbjct: 181 LAHFGLYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKFAN 240

Query: 241 DGKKGKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYGGFSG 300
           DGKKGKPGGAGPDG Q SVG+QGS HGDG+ MPSQAP+PGSMGG YGGPG IGSYGGF+G
Sbjct: 241 DGKKGKPGGAGPDGAQASVGSQGSAHGDGVGMPSQAPMPGSMGGHYGGPGGIGSYGGFTG 300

Query: 301 GLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSS 360
           GLH PPQLG+NPLNSSL   GPGL SM NQ  NSLNGTGGYGGG G G Y GGYGGPG S
Sbjct: 301 GLHGPPQLGHNPLNSSLA--GPGLPSMSNQAQNSLNGTGGYGGGLG-GPYSGGYGGPGPS 360

Query: 361 GYSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMPSNGYPDSLPYSLSSSAGYPNPHQHT 420
            +SG+G G AGGLG A AGTG GLYRLPPNS GMPSNGY DSLPYSLSSS GYPN HQ  
Sbjct: 361 SFSGLGAGTAGGLGGAAAGTGSGLYRLPPNSAGMPSNGYSDSLPYSLSSS-GYPNQHQQ- 420

Query: 421 TGTSPAPRVPPGGMYPNVPPFY 443
           TGTSPAPRVPPGGMYPNVPPFY
Sbjct: 421 TGTSPAPRVPPGGMYPNVPPFY 437

[Close]

BLAST of Lsi04G020240 vs. TAIR 10
Match: AT3G15010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 438.7 bits (1127), Expect = 5.4e-123
Identity = 264/448 (58.93%), Postives = 309/448 (68.97%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVL---KLSTEDARKIIERFTPDQLIDILQDAVSRHSDV 60
           MD++KKRK+DENG  L  +    +   +LS +DARKIIERFT DQL+D+LQ+A+ RH DV
Sbjct: 1   MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60

Query: 61  LDAVRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGF 120
           L++VR  AD D++QRKLF+RGL  DT+TEGLR LFS YG+LEEA+VILDK TGKSKGYGF
Sbjct: 61  LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120

Query: 121 VTFKHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAA 180
           VTF HVDGALLALKEPSK IDGRVTVTQLAA+GN G+ S  AD+S+RKIYVANVP DM A
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180

Query: 181 DKLLAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCK 240
           D+LL HF  YG++EEGPLGFDK TGK RG+ALFVYK  EGAQAAL DP+K I+G+ ++CK
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240

Query: 241 YANDGKK-GKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYG 300
            A DGKK GKPG   P    G  G+ G VHG+GM M   A       G YG  G I +YG
Sbjct: 241 LAVDGKKGGKPG--MPQAQDGGSGH-GHVHGEGMGMVRPA-------GPYGAAGGISAYG 300

Query: 301 GFSGGLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGG 360
           G+SGG   PP    N  +SS+G                  G+ GYGG +      GGYGG
Sbjct: 301 GYSGG---PPAHHMNSTHSSMG-----------------VGSAGYGGHY------GGYGG 360

Query: 361 PGSSG-YSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMP-SNGYPDSLPYSLSSSAGYP 420
           PG +G Y G+G G  G       GTG G YR+PP+S  MP   GYP+S  Y LSSSAGYP
Sbjct: 361 PGGTGVYGGLGGGYGG------PGTGSGQYRMPPSS--MPGGGGYPESGHYGLSSSAGYP 404

Query: 421 NPHQHTTGTSPAPRVPPGGMYPNVPPFY 443
             H    GTSP PRVP GGMYPN PP Y
Sbjct: 421 GQHHQAVGTSPVPRVPHGGMYPNGPPNY 404

[Close]

BLAST of Lsi04G020240 vs. TAIR 10
Match: AT3G15010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 438.7 bits (1127), Expect = 5.4e-123
Identity = 264/448 (58.93%), Postives = 309/448 (68.97%), Query Frame = 0


Query: 1   MDVVKKRKVDENGVLLADSDHSVL---KLSTEDARKIIERFTPDQLIDILQDAVSRHSDV 60
           MD++KKRK+DENG  L  +    +   +LS +DARKIIERFT DQL+D+LQ+A+ RH DV
Sbjct: 1   MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60

Query: 61  LDAVRSVADHDVAQRKLFVRGLGWDTSTEGLRKLFSVYGELEEAVVILDKATGKSKGYGF 120
           L++VR  AD D++QRKLF+RGL  DT+TEGLR LFS YG+LEEA+VILDK TGKSKGYGF
Sbjct: 61  LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120

Query: 121 VTFKHVDGALLALKEPSKTIDGRVTVTQLAAAGNTGSNSNAADVSLRKIYVANVPIDMAA 180
           VTF HVDGALLALKEPSK IDGRVTVTQLAA+GN G+ S  AD+S+RKIYVANVP DM A
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA 180

Query: 181 DKLLAHFALYGEIEEGPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCK 240
           D+LL HF  YG++EEGPLGFDK TGK RG+ALFVYK  EGAQAAL DP+K I+G+ ++CK
Sbjct: 181 DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCK 240

Query: 241 YANDGKK-GKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGSYG 300
            A DGKK GKPG   P    G  G+ G VHG+GM M   A       G YG  G I +YG
Sbjct: 241 LAVDGKKGGKPG--MPQAQDGGSGH-GHVHGEGMGMVRPA-------GPYGAAGGISAYG 300

Query: 301 GFSGGLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGG 360
           G+SGG   PP    N  +SS+G                  G+ GYGG +      GGYGG
Sbjct: 301 GYSGG---PPAHHMNSTHSSMG-----------------VGSAGYGGHY------GGYGG 360

Query: 361 PGSSG-YSGMGVGAAGGLGSATAGTGPGLYRLPPNSGGMP-SNGYPDSLPYSLSSSAGYP 420
           PG +G Y G+G G  G       GTG G YR+PP+S  MP   GYP+S  Y LSSSAGYP
Sbjct: 361 PGGTGVYGGLGGGYGG------PGTGSGQYRMPPSS--MPGGGGYPESGHYGLSSSAGYP 404

Query: 421 NPHQHTTGTSPAPRVPPGGMYPNVPPFY 443
             H    GTSP PRVP GGMYPN PP Y
Sbjct: 421 GQHHQAVGTSPVPRVPHGGMYPNGPPNY 404

[Close]

BLAST of Lsi04G020240 vs. TAIR 10
Match: AT2G41060.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 186.4 bits (472), Expect = 4.9e-47
Identity = 137/364 (37.64%), Postives = 179/364 (49.18%), Query Frame = 0


Query: 29  EDARKIIERFTPDQLIDILQDAVSRHSDVLDAVRSVADHDVAQRKLFVRGLGWDTSTEGL 88
           E    ++E F+ DQL+ +L++A  RH DV + +R VAD D+  RK+FV GLGWDT  + L
Sbjct: 85  EPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSL 144

Query: 89  RKLFSVYGELEEAVVILDKATGKSKGYGFVTFKHVDGALLALKEPSKTIDGRVTVTQLAA 148
              F  YGE+E+   ++DK +G+SKGYGF+ FK   GA  ALK+P K I  R+T  QLA+
Sbjct: 145 IDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLAS 204

Query: 149 AGNTGSNSNAADVS-------LRKIYVANVPIDMAADKLLAHFALYGEIEEGPLGFDKQT 208
            G    N   A           RKIYV+NV  D+   KLL  F+ +GEIEEGPLG DK T
Sbjct: 205 IGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKAT 264

Query: 209 GKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYANDGKK----------------- 268
           G+ +G+ALFVY+  E A+ AL +P KT EG  + C  ANDG K                 
Sbjct: 265 GRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQHNHNSHNQNSR 324

Query: 269 ---------GKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGG--QYGGPGSIG 328
                    G PGG G      +   Q      G  + +     G+  G  Q  G   +G
Sbjct: 325 YQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQGAGLGLNQAFGQALLG 384

Query: 329 SYGGFSGGLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGG 358
           + G  S G       GY    +   G  PG  +             G GG  G G +G G
Sbjct: 385 TLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQAGYQGGYQTQQPGQGGA-GRGQHGAG 444

[Close]

BLAST of Lsi04G020240 vs. TAIR 10
Match: AT2G41060.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 186.4 bits (472), Expect = 4.9e-47
Identity = 137/364 (37.64%), Postives = 179/364 (49.18%), Query Frame = 0


Query: 29  EDARKIIERFTPDQLIDILQDAVSRHSDVLDAVRSVADHDVAQRKLFVRGLGWDTSTEGL 88
           E    ++E F+ DQL+ +L++A  RH DV + +R VAD D+  RK+FV GLGWDT  + L
Sbjct: 85  EPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSL 144

Query: 89  RKLFSVYGELEEAVVILDKATGKSKGYGFVTFKHVDGALLALKEPSKTIDGRVTVTQLAA 148
              F  YGE+E+   ++DK +G+SKGYGF+ FK   GA  ALK+P K I  R+T  QLA+
Sbjct: 145 IDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLAS 204

Query: 149 AGNTGSNSNAADVS-------LRKIYVANVPIDMAADKLLAHFALYGEIEEGPLGFDKQT 208
            G    N   A           RKIYV+NV  D+   KLL  F+ +GEIEEGPLG DK T
Sbjct: 205 IGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKAT 264

Query: 209 GKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYANDGKK----------------- 268
           G+ +G+ALFVY+  E A+ AL +P KT EG  + C  ANDG K                 
Sbjct: 265 GRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQHNHNSHNQNSR 324

Query: 269 ---------GKPGGAGPDGVQGSVGNQGSVHGDGMNMPSQAPLPGSMGG--QYGGPGSIG 328
                    G PGG G      +   Q      G  + +     G+  G  Q  G   +G
Sbjct: 325 YQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQGAGLGLNQAFGQALLG 384

Query: 329 SYGGFSGGLHAPPQLGYNPLNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGG 358
           + G  S G       GY    +   G  PG  +             G GG  G G +G G
Sbjct: 385 TLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQAGYQGGYQTQQPGQGGA-GRGQHGAG 444

[Close]

BLAST of Lsi04G020240 vs. TAIR 10
Match: AT3G56860.3 (UBP1-associated protein 2A )

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-43
Identity = 147/399 (36.84%), Postives = 195/399 (48.87%), Query Frame = 0


Query: 29  EDARKIIERFTPDQLIDILQDAVSRHSDVLDAVRSVADHDVAQRKLFVRGLGWDTSTEGL 88
           E  + ++E F+ +Q++ +L++A  +H DV + +R VAD D   RK+FV GLGWDT TE L
Sbjct: 97  EPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETL 156

Query: 89  RKLFSVYGELEEAVVILDKATGKSKGYGFVTFKHVDGALLALKEPSKTIDGRVTVTQLAA 148
            + F  YGE+E+   + DK +GKSKGYGF+ +K   GA  ALK+P K I  R+T  QLA+
Sbjct: 157 IEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLAS 216

Query: 149 AGNT--GSNSNAADVSL-----------RKIYVANVPIDMAADKLLAHFALYGEIEEGPL 208
            G    G+   AA VS            +KIYV+NV  ++   KLL  F+ +GEIEEGPL
Sbjct: 217 KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPL 276

Query: 209 GFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIEGRQVSCKYANDGKKGKPGGAGPDGV 268
           G DK TG+ +G+ LFVYK  E A+ AL +P KT EG  + C+ A DG   KPG       
Sbjct: 277 GLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGP--KPG------- 336

Query: 269 QGSVGNQGSVHGDGMNMPSQAPLPGSMGGQYGGPGSIGS-YGGFSGGLHAPPQLGYNP-- 328
                 +   H    +  +      +    YG PG  G    G   G+  P     NP  
Sbjct: 337 ------KQQQHHHNPHAYNNPRYQRNDNNGYGPPGGHGHLMAGNPAGMGGPTAQVINPAI 396

Query: 329 ---LNSSLGGPGPGLSSMGNQTHNSLNGTGGYGGGFGSGTYGGGYGGPGSSGYSGMGVGA 388
              L + L   G GL +       +L G+ G   G      G G G P   G   M  G 
Sbjct: 397 GQALTALLASQGAGL-AFNPAIGQALLGSLGTAAGVNP---GNGVGMPTGYGTQAMAPGT 456

Query: 389 AGGLGSATAGTGPGL---YRLPPNSGGMPSNGYPDSLPY 406
             G      GT PGL   Y+ P    G  S G     PY
Sbjct: 457 MPGY-----GTQPGLQGGYQTPQPGQGGTSRGQHGVGPY 471

The following BLAST results are available for this feature:

BLAST of Lsi04G020240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LKA4	7.7e-122	58.93	UBP1-associated protein 2C OS=Arabidopsis thaliana OX=3702 GN=UBA2C PE=2 SV=1	[more]
Q9LJ04	3.0e-49	40.30	RNA-binding protein P OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-P PE=1 SV=...	[more]
O80678	6.9e-46	37.64	UBP1-associated protein 2B OS=Arabidopsis thaliana OX=3702 GN=UBA2B PE=2 SV=1	[more]
Q9LES2	2.1e-42	36.84	UBP1-associated protein 2A OS=Arabidopsis thaliana OX=3702 GN=UBA2A PE=1 SV=1	[more]
Q9CX86	1.1e-22	32.00	Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus OX=10090 GN=Hnrnpa0 P...	[more]

BLAST of Lsi04G020240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJY4	9.5e-216	89.14	UBP1-associated protein 2C-like OS=Cucurbita moschata OX=3662 GN=LOC111446005 PE...	[more]
A0A6J1CQ00	5.4e-211	88.91	UBP1-associated protein 2C-like OS=Momordica charantia OX=3673 GN=LOC111013083 P...	[more]
A0A6J1IT82	1.2e-210	88.24	UBP1-associated protein 2C-like OS=Cucurbita maxima OX=3661 GN=LOC111480390 PE=4...	[more]
A0A0A0KYY6	6.2e-167	74.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083660 PE=4 SV=1	[more]
A0A6J1CND4	5.3e-166	73.44	UBP1-associated protein 2C OS=Momordica charantia OX=3673 GN=LOC111012853 PE=4 S...	[more]

BLAST of Lsi04G020240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899568.1	6.9e-229	94.81	UBP1-associated protein 2C-like [Benincasa hispida]	[more]
XP_022940378.1	2.0e-215	89.14	UBP1-associated protein 2C-like [Cucurbita moschata] >XP_022940379.1 UBP1-associ...	[more]
XP_023524648.1	7.4e-215	88.91	UBP1-associated protein 2C-like [Cucurbita pepo subsp. pepo] >XP_023524649.1 UBP...	[more]
KAG6607907.1	2.2e-214	88.91	UBP1-associated protein 2C, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022143148.1	1.1e-210	88.91	UBP1-associated protein 2C-like [Momordica charantia]	[more]

BLAST of Lsi04G020240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15010.1	5.4e-123	58.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G15010.2	5.4e-123	58.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G41060.1	4.9e-47	37.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G41060.2	4.9e-47	37.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G56860.3	1.5e-43	36.84	UBP1-associated protein 2A	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 165..237 e-value: 5.3E-10 score: 49.2 coord: 73..145 e-value: 1.2E-20 score: 84.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 166..232 e-value: 9.1E-7 score: 28.6 coord: 74..141 e-value: 1.9E-15 score: 56.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 164..241 score: 13.089052
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 72..149 score: 15.32331
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 63..152 e-value: 2.6E-21 score: 77.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 153..274 e-value: 5.1E-16 score: 60.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 384..442
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..425
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 309..332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..282
None	No IPR available	PANTHER	PTHR48024:SF25	UBP1-ASSOCIATED PROTEIN 2C	coord: 1..409
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..409
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 164..239 e-value: 1.41813E-28 score: 105.39
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 72..147 e-value: 2.09491E-38 score: 131.969
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 68..148
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 157..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G020240.1	Lsi04G020240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding