Lsi04G015370 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G015370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	HXXXD-type acyl-transferase family protein
Location	chr04: 22991792 .. 22992085 (+)
RNA-Seq Expression	Lsi04G015370
Synteny	Lsi04G015370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAATCTTCTTCACCGCCTCAAAAACTTCCTCTCCACCGCTCTCCTCCATTTCTACCCACTTCCCGGCCGCCTTGCTACCATCACAAACCACCATCATCTTCAACCTTCCATCTCGAGTTACGTCGACTGCGTTAACAGCCCGGGAGCCAAGTTCATCCACGCCGCCCTCGACATCACAATTTCTGATGTTCTCTCCCCTGTTGACGTGCCTTCAGTGGTCTACTCTTTCTTTGACCACTACAAAGCTGTCAACTATGATGGTCATTTCATGCCTTTGGTGTCCGTTTAG

mRNA sequence

ATGCCTAATCTTCTTCACCGCCTCAAAAACTTCCTCTCCACCGCTCTCCTCCATTTCTACCCACTTCCCGGCCGCCTTGCTACCATCACAAACCACCATCATCTTCAACCTTCCATCTCGAGTTACGTCGACTGCGTTAACAGCCCGGGAGCCAAGTTCATCCACGCCGCCCTCGACATCACAATTTCTGATGTTCTCTCCCCTGTTGACGTGCCTTCAGTGGTCTACTCTTTCTTTGACCACTACAAAGCTGTCAACTATGATGGTCATTTCATGCCTTTGGTGTCCGTTTAG

Coding sequence (CDS)

ATGCCTAATCTTCTTCACCGCCTCAAAAACTTCCTCTCCACCGCTCTCCTCCATTTCTACCCACTTCCCGGCCGCCTTGCTACCATCACAAACCACCATCATCTTCAACCTTCCATCTCGAGTTACGTCGACTGCGTTAACAGCCCGGGAGCCAAGTTCATCCACGCCGCCCTCGACATCACAATTTCTGATGTTCTCTCCCCTGTTGACGTGCCTTCAGTGGTCTACTCTTTCTTTGACCACTACAAAGCTGTCAACTATGATGGTCATTTCATGCCTTTGGTGTCCGTTTAG

Protein sequence

MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDITISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV

Homology

[Close]

BLAST of Lsi04G015370 vs. ExPASy Swiss-Prot
Match: Q9SND9 (Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana OX=3702 GN=At3g50280 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-06
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 3   NLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALD-IT 62
           + + RL+  LS+AL  ++P  GRL  + NH     ++S Y++C  S GAKFIHA  D ++
Sbjct: 54  HFISRLRTSLSSALDIYFPFAGRLNKVENHE--DETVSFYINCDGS-GAKFIHAVSDSVS 113

Query: 63  ISDVLSP-VDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           +SD+L P   VP     F+      + DG   PL+++
Sbjct: 114 VSDLLRPDGSVPDFFRIFYPMNGVKSIDGLSEPLLAL 147

[Close]

BLAST of Lsi04G015370 vs. ExPASy TrEMBL
Match: A0A0A0KZT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641500 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 80/97 (82.47%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
           MP  LHRLKN LSTALLHFYPL GRL TITNHHHL PSIS YVDCVNSPGAKFIHA LDI
Sbjct: 55  MPIFLHRLKNSLSTALLHFYPLSGRLVTITNHHHLHPSISIYVDCVNSPGAKFIHATLDI 114

Query: 61  TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           TISD LSP+DVPSVVYS FD++KAVNYDGH +PL+S+
Sbjct: 115 TISDFLSPIDVPSVVYSLFDNHKAVNYDGHSLPLLSL 151

[Close]

BLAST of Lsi04G015370 vs. ExPASy TrEMBL
Match: A0A5A7V7S6 (Putative acetyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001090 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.9e-38
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
          MP  LHRLKN  STALLHFYPL GRL TITNHHH  PSIS YVDCVNSPGAKFIHAALD+
Sbjct: 1  MPIFLHRLKNSFSTALLHFYPLSGRLVTITNHHHFHPSISIYVDCVNSPGAKFIHAALDV 60

Query: 61 TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
          TISD LSP+DVPSVVYS FDH+KAVNYDGH + L+S+
Sbjct: 61 TISDFLSPIDVPSVVYSLFDHHKAVNYDGHSLSLLSL 97

[Close]

BLAST of Lsi04G015370 vs. ExPASy TrEMBL
Match: A0A5D3D9E5 (Putative acetyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003180 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.9e-38
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
           MP  LHRLKN  STALLHFYPL GRL TITNHHH  PSIS YVDCVNSPGAKFIHAALD+
Sbjct: 55  MPIFLHRLKNSFSTALLHFYPLSGRLVTITNHHHFHPSISIYVDCVNSPGAKFIHAALDV 114

Query: 61  TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           TISD LSP+DVPSVVYS FDH+KAVNYDGH + L+S+
Sbjct: 115 TISDFLSPIDVPSVVYSLFDHHKAVNYDGHSLSLLSL 151

[Close]

BLAST of Lsi04G015370 vs. ExPASy TrEMBL
Match: A0A1S3BU68 (LOW QUALITY PROTEIN: uncharacterized acetyltransferase At3g50280-like OS=Cucumis melo OX=3656 GN=LOC103493560 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.9e-38
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
           MP  LHRLKN  STALLHFYPL GRL TITNHHH  PSIS YVDCVNSPGAKFIHAALD+
Sbjct: 56  MPIFLHRLKNSFSTALLHFYPLSGRLVTITNHHHFHPSISIYVDCVNSPGAKFIHAALDV 115

Query: 61  TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           TISD LSP+DVPSVVYS FDH+KAVNYDGH + L+S+
Sbjct: 116 TISDFLSPIDVPSVVYSLFDHHKAVNYDGHSLSLLSL 152

[Close]

BLAST of Lsi04G015370 vs. ExPASy TrEMBL
Match: A0A6J1J408 (uncharacterized acetyltransferase At3g50280-like OS=Cucurbita maxima OX=3661 GN=LOC111481132 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.7e-35
Identity = 79/97 (81.44%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
           MPNLLHRLK  LSTALLHFYPL GRLA+  N H  QPSIS YVDCVNSPGAKFIHAALD 
Sbjct: 66  MPNLLHRLKTSLSTALLHFYPLSGRLASTINDH--QPSISVYVDCVNSPGAKFIHAALDT 125

Query: 61  TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           TISDVLSPVDVPSVV+SFFDH +AVNYDG  MPL+S+
Sbjct: 126 TISDVLSPVDVPSVVHSFFDHDRAVNYDGQTMPLLSI 160

[Close]

BLAST of Lsi04G015370 vs. NCBI nr
Match: XP_038898879.1 (uncharacterized acetyltransferase At3g50280-like [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 6.5e-39
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITN-HHHLQPSISSYVDCVNSPGAKFIHAALD 60
           +PN L RLKN LS AL+HFYPL GRL+TITN HHHLQPSIS YVDCVNSPGAKFIHAA+D
Sbjct: 55  IPNFLQRLKNSLSAALVHFYPLSGRLSTITNHHHHLQPSISIYVDCVNSPGAKFIHAAID 114

Query: 61  ITISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           ITISDVLSPVDVPSVV+SFFDH+KAVNYDGH MPL+SV
Sbjct: 115 ITISDVLSPVDVPSVVHSFFDHHKAVNYDGHSMPLLSV 152

[Close]

BLAST of Lsi04G015370 vs. NCBI nr
Match: XP_004141266.1 (uncharacterized acetyltransferase At3g50280 [Cucumis sativus] >KGN55215.1 hypothetical protein Csa_012854 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.5e-38
Identity = 80/97 (82.47%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
           MP  LHRLKN LSTALLHFYPL GRL TITNHHHL PSIS YVDCVNSPGAKFIHA LDI
Sbjct: 55  MPIFLHRLKNSLSTALLHFYPLSGRLVTITNHHHLHPSISIYVDCVNSPGAKFIHATLDI 114

Query: 61  TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           TISD LSP+DVPSVVYS FD++KAVNYDGH +PL+S+
Sbjct: 115 TISDFLSPIDVPSVVYSLFDNHKAVNYDGHSLPLLSL 151

[Close]

BLAST of Lsi04G015370 vs. NCBI nr
Match: KAA0064402.1 (putative acetyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
          MP  LHRLKN  STALLHFYPL GRL TITNHHH  PSIS YVDCVNSPGAKFIHAALD+
Sbjct: 1  MPIFLHRLKNSFSTALLHFYPLSGRLVTITNHHHFHPSISIYVDCVNSPGAKFIHAALDV 60

Query: 61 TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
          TISD LSP+DVPSVVYS FDH+KAVNYDGH + L+S+
Sbjct: 61 TISDFLSPIDVPSVVYSLFDHHKAVNYDGHSLSLLSL 97

[Close]

BLAST of Lsi04G015370 vs. NCBI nr
Match: TYK20185.1 (putative acetyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
           MP  LHRLKN  STALLHFYPL GRL TITNHHH  PSIS YVDCVNSPGAKFIHAALD+
Sbjct: 55  MPIFLHRLKNSFSTALLHFYPLSGRLVTITNHHHFHPSISIYVDCVNSPGAKFIHAALDV 114

Query: 61  TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           TISD LSP+DVPSVVYS FDH+KAVNYDGH + L+S+
Sbjct: 115 TISDFLSPIDVPSVVYSLFDHHKAVNYDGHSLSLLSL 151

[Close]

BLAST of Lsi04G015370 vs. NCBI nr
Match: XP_008452577.2 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized acetyltransferase At3g50280-like [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
           MP  LHRLKN  STALLHFYPL GRL TITNHHH  PSIS YVDCVNSPGAKFIHAALD+
Sbjct: 56  MPIFLHRLKNSFSTALLHFYPLSGRLVTITNHHHFHPSISIYVDCVNSPGAKFIHAALDV 115

Query: 61  TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           TISD LSP+DVPSVVYS FDH+KAVNYDGH + L+S+
Sbjct: 116 TISDFLSPIDVPSVVYSLFDHHKAVNYDGHSLSLLSL 152

[Close]

BLAST of Lsi04G015370 vs. TAIR 10
Match: AT5G07870.1 (HXXXD-type acyl-transferase family protein )

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-22
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
           M  LL +LK+ L+ AL+HFYPL GRL+T+   +    S+  +VDC NSPGA+FIHA  D+
Sbjct: 65  METLLQKLKDSLAIALVHFYPLAGRLSTLKTDNSRSHSV--FVDCNNSPGARFIHAESDL 124

Query: 61  TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           ++SD+L    VP VV S FDH+KA+N DG+ M L+S+
Sbjct: 125 SVSDILGSTYVPLVVQSLFDHHKALNRDGYTMSLLSI 159

[Close]

BLAST of Lsi04G015370 vs. TAIR 10
Match: AT5G42830.1 (HXXXD-type acyl-transferase family protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-21
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 4   LLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDITIS 63
           LL +LK+ L+  L+HFYPL GRL+++T       S S +VDC +SPGA FI+A  D+ I 
Sbjct: 60  LLEKLKDSLAVTLVHFYPLAGRLSSLTTEK--PKSYSVFVDCNDSPGAGFIYATSDLCIK 119

Query: 64  DVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           D++    VPS+V SFFDH+KAVN+DGH M L+SV
Sbjct: 120 DIVGAKYVPSIVQSFFDHHKAVNHDGHTMSLLSV 151

[Close]

BLAST of Lsi04G015370 vs. TAIR 10
Match: AT5G07850.1 (HXXXD-type acyl-transferase family protein )

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-20
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
           M   L +L++ L+  L+HFYPL GRL+T+   +    S S +VDC +SPGA FIHA  D+
Sbjct: 63  METWLQKLRDSLAETLVHFYPLAGRLSTLKTDN--PRSYSVFVDCNDSPGAGFIHAKSDL 122

Query: 61  TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           ++ D++    VP VV SFFDH+KAV++DGH M L SV
Sbjct: 123 SVRDIVGSNYVPLVVQSFFDHHKAVSHDGHTMSLFSV 157

[Close]

BLAST of Lsi04G015370 vs. TAIR 10
Match: AT5G07860.1 (HXXXD-type acyl-transferase family protein )

HSP 1 Score: 90.9 bits (224), Expect = 6.1e-19
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHAALDI 60
           M  LL +LK+ L+ AL+HFYPL GR++T+  +     S+  +VDC NSP A FIHA  D+
Sbjct: 65  METLLQKLKDSLAIALVHFYPLAGRISTLKTNDSRSHSV--FVDCNNSP-AGFIHAESDL 124

Query: 61  TISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           ++SD+L    VP VV SFFDH+KA++ DG  M L+SV
Sbjct: 125 SVSDILGSKYVPLVVQSFFDHHKALSRDGDTMTLLSV 158

[Close]

BLAST of Lsi04G015370 vs. TAIR 10
Match: AT2G39980.1 (HXXXD-type acyl-transferase family protein )

HSP 1 Score: 71.6 bits (174), Expect = 3.8e-13
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1   MPNLLHRLKNFLSTALLHFYPLPGRLATITNHHHLQPSISSYVDCVNSPGAKFIHA-ALD 60
           +P L+  LK+ LS  L HF PL GRL+T ++ H        ++ C N  GA F+ A A  
Sbjct: 55  LPALISHLKHSLSITLTHFPPLAGRLSTSSSGH-------VFLTC-NDAGADFVFAQAKS 114

Query: 61  ITISDVLSPVDVPSVVYSFFDHYKAVNYDGHFMPLVSV 98
           I +SDV++ +DVP VV  FF + +AV+Y+GH  P+++V
Sbjct: 115 IHVSDVIAGIDVPDVVKEFFTYDRAVSYEGHNRPILAV 144

The following BLAST results are available for this feature:

BLAST of Lsi04G015370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SND9	1.5e-06	36.08	Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

BLAST of Lsi04G015370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZT7	1.2e-38	82.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641500 PE=3 SV=1	[more]
A0A5A7V7S6	5.9e-38	80.41	Putative acetyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5D3D9E5	5.9e-38	80.41	Putative acetyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BU68	5.9e-38	80.41	LOW QUALITY PROTEIN: uncharacterized acetyltransferase At3g50280-like OS=Cucumis...	[more]
A0A6J1J408	4.7e-35	81.44	uncharacterized acetyltransferase At3g50280-like OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Lsi04G015370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898879.1	6.5e-39	84.69	uncharacterized acetyltransferase At3g50280-like [Benincasa hispida]	[more]
XP_004141266.1	2.5e-38	82.47	uncharacterized acetyltransferase At3g50280 [Cucumis sativus] >KGN55215.1 hypoth...	[more]
KAA0064402.1	1.2e-37	80.41	putative acetyltransferase [Cucumis melo var. makuwa]	[more]
TYK20185.1	1.2e-37	80.41	putative acetyltransferase [Cucumis melo var. makuwa]	[more]
XP_008452577.2	1.2e-37	80.41	PREDICTED: LOW QUALITY PROTEIN: uncharacterized acetyltransferase At3g50280-like...	[more]

BLAST of Lsi04G015370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07870.1	3.5e-22	51.55	HXXXD-type acyl-transferase family protein	[more]
AT5G42830.1	1.0e-21	53.19	HXXXD-type acyl-transferase family protein	[more]
AT5G07850.1	7.2e-20	49.48	HXXXD-type acyl-transferase family protein	[more]
AT5G07860.1	6.1e-19	50.52	HXXXD-type acyl-transferase family protein	[more]
AT2G39980.1	3.8e-13	41.84	HXXXD-type acyl-transferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003480	Transferase	PFAM	PF02458	Transferase	coord: 5..97 e-value: 1.7E-10 score: 40.2
IPR023213	Chloramphenicol acetyltransferase-like domain superfamily	GENE3D	3.30.559.10		coord: 1..97 e-value: 1.6E-12 score: 49.2
None	No IPR available	PANTHER	PTHR31896:SF46	HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN	coord: 2..97
None	No IPR available	PANTHER	PTHR31896	FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED	coord: 2..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G015370.1	Lsi04G015370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups