Lsi04G011940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G011940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transposase
Location	chr04: 18006199 .. 18006558 (-)
RNA-Seq Expression	Lsi04G011940
Synteny	Lsi04G011940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTTTATTTTTTTATTGATAGTTGTTACATTTATGTAGGAAAAAGAATCATTCAACAAGATCGTCGAGCTAAGAATAAGTATAACCATCGACTTTCAAGGAAAGGCTACGCTAATCTTCGTGAGGAAATGGTAAGAATATATTAGTTCATGTTTTTGTCATTTTTAAATCATTTTAATGTATCTAATTTTGTCTCCGTTGAAATGTAGAAAAAAGTATCTTCACATGAAGATGATTTTGACCAAGCTAACATGTGGAAGAAGGCTCGAGTAGATAAGAATGGAGAATACACCAATCAACATGTTCAAGAAGTTGTCAATCGTTGTAAGATATGCATTACATTTTACATAATGTAA

mRNA sequence

ATGTTATTTTATTTTTTTATTGATAGTTGTTACATTTATGTAGGAAAAAGAATCATTCAACAAGATCGTCGAGCTAAGAATAAGTATAACCATCGACTTTCAAGGAAAGGCTACGCTAATCTTCGTGAGGAAATGAAAAAAGTATCTTCACATGAAGATGATTTTGACCAAGCTAACATGTGGAAGAAGGCTCGAGTAGATAAGAATGGAGAATACACCAATCAACATGTTCAAGAAGTTGTCAATCGTTGTAAGATATGCATTACATTTTACATAATGTAA

Coding sequence (CDS)

ATGTTATTTTATTTTTTTATTGATAGTTGTTACATTTATGTAGGAAAAAGAATCATTCAACAAGATCGTCGAGCTAAGAATAAGTATAACCATCGACTTTCAAGGAAAGGCTACGCTAATCTTCGTGAGGAAATGAAAAAAGTATCTTCACATGAAGATGATTTTGACCAAGCTAACATGTGGAAGAAGGCTCGAGTAGATAAGAATGGAGAATACACCAATCAACATGTTCAAGAAGTTGTCAATCGTTGTAAGATATGCATTACATTTTACATAATGTAA

Protein sequence

MLFYFFIDSCYIYVGKRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKNGEYTNQHVQEVVNRCKICITFYIM

Homology

[Close]

BLAST of Lsi04G011940 vs. ExPASy TrEMBL
Match: A0A5A7TC58 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00210 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.7e-19
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 16  KRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKNGEYTNQ 75
           KR +QQ+RR KNKYNHRLSRKGYANLREE+K + S E + D+A+MWKKARVDK G+Y N+
Sbjct: 189 KRKLQQERRKKNKYNHRLSRKGYANLREELKNIPSKESELDRASMWKKARVDKKGQYDNE 248

Query: 76  HVQEVVNR 84
            VQEVVNR
Sbjct: 249 DVQEVVNR 256

[Close]

BLAST of Lsi04G011940 vs. ExPASy TrEMBL
Match: A0A5A7VG24 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00090 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 10  CYIYVGKRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKN 69
           C  +  KR +QQ+RR KNKYNHRLSRKGYANLREE+K + S E + D+A+MWKK RVDK 
Sbjct: 438 CPHFEDKRKLQQERRKKNKYNHRLSRKGYANLREELKNIPSKESELDRASMWKKTRVDKK 497

Query: 70  GEYTNQHVQEVVNR 84
           G+Y N+ +QEVVNR
Sbjct: 498 GQYDNEDIQEVVNR 511

[Close]

BLAST of Lsi04G011940 vs. ExPASy TrEMBL
Match: A0A5D3CYW8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00470 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.0e-18
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 16  KRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKNGEYTNQ 75
           KR +Q++RR KNKYNHRLSRKGYANLREE+K + S E + D+A+MWKK RVDK G+Y N+
Sbjct: 304 KRKLQKERRKKNKYNHRLSRKGYANLREELKNIPSEESELDRASMWKKTRVDKKGQYDNE 363

Query: 76  HVQEVVNR 84
            VQEVVNR
Sbjct: 364 DVQEVVNR 371

[Close]

BLAST of Lsi04G011940 vs. ExPASy TrEMBL
Match: A0A5A7SQD4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G002580 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.0e-18
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 16  KRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKNGEYTNQ 75
           KR +Q++RR KNKYNHRLSRKGYANLREE+K + S E + D+A+MWKK RVDK G+Y N+
Sbjct: 304 KRKLQKERRKKNKYNHRLSRKGYANLREELKNIPSEESELDRASMWKKTRVDKKGQYDNE 363

Query: 76  HVQEVVNR 84
            VQEVVNR
Sbjct: 364 DVQEVVNR 371

[Close]

BLAST of Lsi04G011940 vs. ExPASy TrEMBL
Match: A0A5D3DS40 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00680 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.6e-18
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 10  CYIYVGKRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKN 69
           C  +  KR +QQ+RR  NKYNHRLSRK YANLREE+K + S E + D+A+MWKKARVDK 
Sbjct: 644 CPHFEEKRKLQQERRKNNKYNHRLSRKDYANLREELKNIPSEESELDRASMWKKARVDKK 703

Query: 70  GEYTNQHVQEVVNR 84
           G+Y N+ VQEVVNR
Sbjct: 704 GQYNNEDVQEVVNR 717

[Close]

BLAST of Lsi04G011940 vs. NCBI nr
Match: KAA0040930.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa] >TYK10607.1 putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 16  KRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKNGEYTNQ 75
           KR +QQ+RR KNKYNHRLSRKGYANLREE+K + S E + D+A+MWKKARVDK G+Y N+
Sbjct: 189 KRKLQQERRKKNKYNHRLSRKGYANLREELKNIPSKESELDRASMWKKARVDKKGQYDNE 248

Query: 76  HVQEVVNR 84
            VQEVVNR
Sbjct: 249 DVQEVVNR 256

[Close]

BLAST of Lsi04G011940 vs. NCBI nr
Match: KAA0066037.1 (hypothetical protein E6C27_scaffold21G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 10  CYIYVGKRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKN 69
           C  +  KR +QQ+RR KNKYNHRLSRKGYANLREE+K + S E + D+A+MWKK RVDK 
Sbjct: 438 CPHFEDKRKLQQERRKKNKYNHRLSRKGYANLREELKNIPSKESELDRASMWKKTRVDKK 497

Query: 70  GEYTNQHVQEVVNR 84
           G+Y N+ +QEVVNR
Sbjct: 498 GQYDNEDIQEVVNR 511

[Close]

BLAST of Lsi04G011940 vs. NCBI nr
Match: XP_031744860.1 (uncharacterized protein LOC105434490 [Cucumis sativus] >XP_031744894.1 uncharacterized protein LOC105434490 [Cucumis sativus] >XP_031744918.1 uncharacterized protein LOC105434490 [Cucumis sativus] >XP_031744949.1 uncharacterized protein LOC105434490 [Cucumis sativus] >XP_031744971.1 uncharacterized protein LOC105434490 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 7.9e-18
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 10 CYIYVGKRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKN 69
          C  +  KR +QQ+RR KNKYNH+LSRKGYANLREE+K   S E D D+A+MWKKARVDK 
Sbjct: 19 CPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEEGDLDRASMWKKARVDKK 78

Query: 70 GEYTNQHVQEVVN 83
           EY N+HVQE++N
Sbjct: 79 REYDNEHVQEIMN 91

[Close]

BLAST of Lsi04G011940 vs. NCBI nr
Match: KAE8653128.1 (hypothetical protein Csa_020048 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 7.9e-18
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 10 CYIYVGKRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKN 69
          C  +  KR +QQ+RR KNKYNH+LSRKGYANLREE+K   S E D D+A+MWKKARVDK 
Sbjct: 19 CPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEEGDLDRASMWKKARVDKK 78

Query: 70 GEYTNQHVQEVVN 83
           EY N+HVQE++N
Sbjct: 79 REYDNEHVQEIMN 91

[Close]

BLAST of Lsi04G011940 vs. NCBI nr
Match: KAA0033120.1 (uncharacterized protein E6C27_scaffold269G002580 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 16  KRIIQQDRRAKNKYNHRLSRKGYANLREEMKKVSSHEDDFDQANMWKKARVDKNGEYTNQ 75
           KR +Q++RR KNKYNHRLSRKGYANLREE+K + S E + D+A+MWKK RVDK G+Y N+
Sbjct: 304 KRKLQKERRKKNKYNHRLSRKGYANLREELKNIPSEESELDRASMWKKTRVDKKGQYDNE 363

Query: 76  HVQEVVNR 84
            VQEVVNR
Sbjct: 364 DVQEVVNR 371

The following BLAST results are available for this feature:

BLAST of Lsi04G011940 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G011940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TC58	7.7e-19	72.06	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7VG24	1.3e-18	64.86	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CYW8	5.0e-18	69.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SQD4	5.0e-18	69.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DS40	6.6e-18	64.86	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00680 PE...	[more]

BLAST of Lsi04G011940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040930.1	1.6e-18	72.06	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa] >TYK106...	[more]
KAA0066037.1	2.7e-18	64.86	hypothetical protein E6C27_scaffold21G00090 [Cucumis melo var. makuwa]	[more]
XP_031744860.1	7.9e-18	65.75	uncharacterized protein LOC105434490 [Cucumis sativus] >XP_031744894.1 uncharact...	[more]
KAE8653128.1	7.9e-18	65.75	hypothetical protein Csa_020048 [Cucumis sativus]	[more]
KAA0033120.1	1.0e-17	69.12	uncharacterized protein E6C27_scaffold269G002580 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi04G011940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 20..85 e-value: 1.6E-7 score: 31.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G011940.1	Lsi04G011940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0016301	kinase activity