Lsi04G011630 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G011630
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Nudix hydrolase
Location	chr04: 16797077 .. 16798953 (-)
RNA-Seq Expression	Lsi04G011630
Synteny	Lsi04G011630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTTTTTGTGGCTTCTAGACTGAATGTTCCAGGAGCATGGCAGATGCCTCAGGTGATTTTGAAATTTCCTCTGTTCTTTTCCTCTGCTTCATTTTGGAATTTTGTTTCATTGCTCAATATATCTAAATGGCTCATTTTTAGTTCATGGGAAGATGTTGTTCCAAATTCTGTTCAATTGTATGAATTTTGGAGACTGCAGGTTAGTTGTGAACTTGTGAACTGTAATGGATTATCTGCCCTTTTGATATCGACGGCGTTTGAATCGGTATCGCTATAAGTTGGCTCATGATGAAAGAGGGAAGCTATAAACCTATAACAACATGTCATAGCTGATTTGGGATATGTTGTTGAAATAAACAGAAAAGTTTCGAATCAATATCTCAAATACTATCGAGATCCAAGGACCGTTATTGTGGTTCTAAAGAACAGTGGTTGCATCGATATAACGACACGATGTAATGGTATATTGAGTGTAACAGGATCTCGCTATATGCTCTTGCCTCTCATCATTGCTTCTGAAAAAATTTGAAATTGCAAAGATGGCTTTTGCTTGGATGACACTATAAAGTTCCAAAATTATCTATCATTCATTAGATAAATCCTTTTATAGAAACAAAATAGATTTCTTTGCTAGAATTCTTTTAGAAAACGAACGTCCGTGAGGACTTCAAATCTTCGGTTAGATTGAATTGGCTGTTTTATTCAATTATTCATTTGTCTTAGGGAGGGATTGAAGATGGTGAAGACCCAAAGTTGGCAGCTGTTAGGGAACTGAGAAAGGAAACTGGAATAGTGTCTGCTGAAATCGTTGCCGAGGTATTACTTTGTTTGTTGATTTGTTTCAACGTCGTTTGTGATGAATTATTAAACCGACCCTTTCTACAGCATTTTCAAAGTCACCTCAACAATAGTACTGAAATAAATTCAAGAATTTGCATTGTTTTCGGTTAACAGGTACCCAAATGGTTGACTTACGACTTTCCTCCTGCTGTGAAGACCAAAGTCAATCGTCTCTGGGGCGGGCAATGGCACGGGCAGGCACAAAAATGGTCCGTCTTTCTGTCTTTTTTCATTCTAGTTGAAATTGAAATTAGACAAGATTGATGCAAAGAAATGAGGTTTATATGCAACTGTTTTGTCCTTGGTCTCATTTTGGAACTTATGACAGGTTTCTTATGAGATTGACAAAAGACGACAGTGAGATTAACTTGGACAACGATGAAGCGGATGTTGAATTTGCAGAGTGGAAATGGGCGAACCCCGAAGAAGTTGTTGAACAGGTCTTTTAAGACACTCGTTTGATAACGATTTCAAAAAGTTTTAAGGATCAAAATCAAGATTTTAGAATATACAAAGCTAAACTTACATACAAATATAGTAACATGTAATTAAAGCTTGTTTTTTTGTTCTTCTTTTTCAGGCTGTGGACTACAAGAGACCAACTTATGAGGAAGTAATGAAGACTTTTGCACCTTACCTTGATGGAAACAAAATATCTACCAAATGCAAATCATCCAAATGGTGAATGGTAAAAAATAATGGTGTTTTTACCTCAATTTTTATGAAGTAAAAAAGAAAGAAAGAAAAAAGAAAGATGAATTTGTAAATGAGGGAACTGCTAGAAAACTGCTTACTTATCTGATTTTGTTGGAATAATTGAAATTTTTGTCAAATTACTTTTAACAGTTTATGGGGGGAAATAACTGTGTGCTATTTTAGGAGATTTGCAGATCTTTGTAAAGAAAGGGGAAGTAGTGAAATGAAAGTGTATGAAAAGGTGTGTGTTGACTTTTTTTTTTTGTGATAATTAATTAATGTATGAATGTTTGGAATTTTTTTGTCTTTTTCTCCCTTTTGGATTTTGGTTGGAAG

mRNA sequence

ATGCAGGTTTTTGTGGCTTCTAGACTGAATGTTCCAGGAGCATGGCAGATGCCTCAGGTTAGTTGTGAACTTGTGAACTGTAATGGATTATCTGCCCTTTTGATATCGACGGCGTTTGAATCGGGAGGGATTGAAGATGGTGAAGACCCAAAGTTGGCAGCTGTTAGGGAACTGAGAAAGGAAACTGGAATAGTGTCTGCTGAAATCGTTGCCGAGGTACCCAAATGGTTGACTTACGACTTTCCTCCTGCTGTGAAGACCAAAGTCAATCGTCTCTGGGGCGGGCAATGGCACGGGCAGGCACAAAAATGGTTTCTTATGAGATTGACAAAAGACGACAGTGAGATTAACTTGGACAACGATGAAGCGGATGTTGAATTTGCAGAGTGGAAATGGGCGAACCCCGAAGAAGTTGTTGAACAGGCTGTGGACTACAAGAGACCAACTTATGAGGAAGTAATGAAGACTTTTGCACCTTACCTTGATGGAAACAAAATATCTACCAAATGCAAATCATCCAAATGGTGAATGGTAAAAAATAATGGTGTTTTTACCTCAATTTTTATGAAGTAAAAAAGAAAGAAAGAAAAAAGAAAGATGAATTTGTAAATGAGGGAACTGCTAGAAAACTGCTTACTTATCTGATTTTGTTGGAATAATTGAAATTTTTGTCAAATTACTTTTAACAGTTTATGGGGGGAAATAACTGTGTGCTATTTTAGGAGATTTGCAGATCTTTGTAAAGAAAGGGGAAGTAGTGAAATGAAAGTGTATGAAAAGGTGTGTGTTGACTTTTTTTTTTTGTGATAATTAATTAATGTATGAATGTTTGGAATTTTTTTGTCTTTTTCTCCCTTTTGGATTTTGGTTGGAAG

Coding sequence (CDS)

ATGCAGGTTTTTGTGGCTTCTAGACTGAATGTTCCAGGAGCATGGCAGATGCCTCAGGTTAGTTGTGAACTTGTGAACTGTAATGGATTATCTGCCCTTTTGATATCGACGGCGTTTGAATCGGGAGGGATTGAAGATGGTGAAGACCCAAAGTTGGCAGCTGTTAGGGAACTGAGAAAGGAAACTGGAATAGTGTCTGCTGAAATCGTTGCCGAGGTACCCAAATGGTTGACTTACGACTTTCCTCCTGCTGTGAAGACCAAAGTCAATCGTCTCTGGGGCGGGCAATGGCACGGGCAGGCACAAAAATGGTTTCTTATGAGATTGACAAAAGACGACAGTGAGATTAACTTGGACAACGATGAAGCGGATGTTGAATTTGCAGAGTGGAAATGGGCGAACCCCGAAGAAGTTGTTGAACAGGCTGTGGACTACAAGAGACCAACTTATGAGGAAGTAATGAAGACTTTTGCACCTTACCTTGATGGAAACAAAATATCTACCAAATGCAAATCATCCAAATGGTGA

Protein sequence

MQVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKETGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW

Homology

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BLAST of Lsi04G011630 vs. ExPASy Swiss-Prot
Match: Q9C6Z2 (Nudix hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=NUDT25 PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.8e-64
Identity = 120/175 (68.57%), Postives = 136/175 (77.71%), Query Frame = 0


Query: 3   VFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKET 62
           VFVASRLNVPGAWQMPQ                      GGIEDGEDPK AA+REL++ET
Sbjct: 23  VFVASRLNVPGAWQMPQ----------------------GGIEDGEDPKSAAMRELQEET 82

Query: 63  GIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRL--TKDDSEINLDN 122
           G+VSAEIV+EVP WLTYDFPPAVK KVNRLWGG+WHGQAQKW+L+RL   +D+ EINL N
Sbjct: 83  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 142

Query: 123 DEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           +EAD EFAEWKWA PEEVVEQAVDYKRPTYEEV+KTF  +L+    + KCKS+KW
Sbjct: 143 NEADSEFAEWKWAKPEEVVEQAVDYKRPTYEEVIKTFGSFLNDTGRAAKCKSAKW 175

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BLAST of Lsi04G011630 vs. ExPASy Swiss-Prot
Match: Q9CAF2 (Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT26 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.3e-42
Identity = 80/161 (49.69%), Postives = 107/161 (66.46%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           ++F ASRL++P AWQMPQ                      GGI++GEDP++A +REL++E
Sbjct: 77  KIFTASRLDIPSAWQMPQ----------------------GGIDEGEDPRVAVMRELKEE 136

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TG+ SAEI+AE P W+TYDFPP V+ K+   WG  W GQAQKWFL++ T  D EINL  D
Sbjct: 137 TGVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGD 196

Query: 122 EAD-VEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL 162
             +  EF EW W +P++VVE AV++K+P Y+EVM  FA +L
Sbjct: 197 GTEKPEFGEWSWTSPDQVVENAVEFKKPVYKEVMSAFASHL 215

[Close]

BLAST of Lsi04G011630 vs. ExPASy Swiss-Prot
Match: Q9FNH4 (Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT27 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-37
Identity = 77/160 (48.12%), Postives = 98/160 (61.25%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           ++F AS++++P  WQMPQ                      GG ++GED + AA RELR+E
Sbjct: 76  KIFTASKIHIPDTWQMPQ----------------------GGADEGEDLRNAAFRELREE 135

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TG+ SAE +AE+P WLTYDFP  VK K+NR W   + GQAQKWFL + T  + EINL  D
Sbjct: 136 TGVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLGD 195

Query: 122 -EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPY 161
             A  EF  W W  PE+V+E AV +KRP YE V+K F PY
Sbjct: 196 GTAKPEFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNPY 213

[Close]

BLAST of Lsi04G011630 vs. ExPASy Swiss-Prot
Match: A3PMX6 (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) OX=349101 GN=rppH PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.7e-28
Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 0


Query: 3   VFVASRLNVP-GAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 62
           +F   R++ P  AWQMPQ                      GGI++GE P+ AA+REL +E
Sbjct: 27  IFAGQRIDSPVPAWQMPQ----------------------GGIDEGEKPREAALRELWEE 86

Query: 63  TGIVS--AEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLD 122
           TGI +   E VA+ P W+TYD PP +   + R+WGG++ GQ QKWFL R    D E+ + 
Sbjct: 87  TGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDDEVGIG 146

Query: 123 NDEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL 162
            D A  EF+ W+W   EE+V   V +KR  YEEV+ TF P+L
Sbjct: 147 TDHA--EFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161

[Close]

BLAST of Lsi04G011630 vs. ExPASy Swiss-Prot
Match: Q3IZC1 (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.) OX=272943 GN=rppH PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.7e-28
Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 0


Query: 3   VFVASRLNVP-GAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 62
           +F   R++ P  AWQMPQ                      GGI++GE P+ AA+REL +E
Sbjct: 27  IFAGQRIDSPVPAWQMPQ----------------------GGIDEGEKPREAALRELWEE 86

Query: 63  TGIVS--AEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLD 122
           TGI +   E VA+ P W+TYD PP +   + R+WGG++ GQ QKWFL R    D E+ + 
Sbjct: 87  TGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEVGIG 146

Query: 123 NDEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL 162
            D A  EF+ W+W   EE+V   V +KR  YEEV+ TF P+L
Sbjct: 147 TDHA--EFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161

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BLAST of Lsi04G011630 vs. ExPASy TrEMBL
Match: A0A0A0KL56 (Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G002050 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.7e-80
Identity = 150/174 (86.21%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           QVFVASRLNVPGAWQMPQ                      GGIEDGEDPKLAAVRELRKE
Sbjct: 22  QVFVASRLNVPGAWQMPQ----------------------GGIEDGEDPKLAAVRELRKE 81

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TGIVSAE+VAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND
Sbjct: 82  TGIVSAEMVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 141

Query: 122 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL+GNKISTKCKSSKW
Sbjct: 142 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLNGNKISTKCKSSKW 173

[Close]

BLAST of Lsi04G011630 vs. ExPASy TrEMBL
Match: A0A6J1D8B1 (nudix hydrolase 25 OS=Momordica charantia OX=3673 GN=LOC111018292 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 148/174 (85.06%), Postives = 151/174 (86.78%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           QVFVASRLNVPGAWQMPQ                      GGIEDGEDPKLAAVRELRKE
Sbjct: 22  QVFVASRLNVPGAWQMPQ----------------------GGIEDGEDPKLAAVRELRKE 81

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TGIVSAEIVAEVP+WLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMR TKDDSEINLDND
Sbjct: 82  TGIVSAEIVAEVPQWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRFTKDDSEINLDND 141

Query: 122 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           EAD+EFAEWKWANPEEV+EQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW
Sbjct: 142 EADIEFAEWKWANPEEVIEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 173

[Close]

BLAST of Lsi04G011630 vs. ExPASy TrEMBL
Match: A0A1S3BZA8 (nudix hydrolase 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495074 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.5e-79
Identity = 148/174 (85.06%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           QVFVAS+LNVPGAWQMPQ                      GGIEDGEDPKLAA+RELRKE
Sbjct: 22  QVFVASKLNVPGAWQMPQ----------------------GGIEDGEDPKLAAIRELRKE 81

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TGIVSAE+VAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND
Sbjct: 82  TGIVSAEMVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 141

Query: 122 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL+GNKISTKCKSSKW
Sbjct: 142 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLNGNKISTKCKSSKW 173

[Close]

BLAST of Lsi04G011630 vs. ExPASy TrEMBL
Match: A0A6J1JPJ6 (nudix hydrolase 25 OS=Cucurbita maxima OX=3661 GN=LOC111488683 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 144/174 (82.76%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           QVFVASRLNVPGAWQMPQ                      GGIEDGED KLAAVREL+KE
Sbjct: 22  QVFVASRLNVPGAWQMPQ----------------------GGIEDGEDLKLAAVRELKKE 81

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TG+VSAEIVAEVPKWLTYDFP AVKTKVNRLWGGQWHGQAQKWFLMR+TKDDSEINLDND
Sbjct: 82  TGVVSAEIVAEVPKWLTYDFPSAVKTKVNRLWGGQWHGQAQKWFLMRMTKDDSEINLDND 141

Query: 122 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           EADVEFAEWKWA+PEEV+EQAVDYKRPTYEEVMKTFA YLDGNKISTKCKSSKW
Sbjct: 142 EADVEFAEWKWASPEEVIEQAVDYKRPTYEEVMKTFAAYLDGNKISTKCKSSKW 173

[Close]

BLAST of Lsi04G011630 vs. ExPASy TrEMBL
Match: A0A6J1FLV4 (nudix hydrolase 25 OS=Cucurbita moschata OX=3662 GN=LOC111446990 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 144/174 (82.76%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           QVFVASRLNVPGAWQMPQ                      GGIEDGED KLAAVREL+KE
Sbjct: 22  QVFVASRLNVPGAWQMPQ----------------------GGIEDGEDLKLAAVRELKKE 81

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TG+VSAEIVAEVPKWLTYDFP AVKTKVNRLWGGQWHGQAQKWFLMR+TKDDSEINLDND
Sbjct: 82  TGVVSAEIVAEVPKWLTYDFPSAVKTKVNRLWGGQWHGQAQKWFLMRMTKDDSEINLDND 141

Query: 122 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           EADVEFAEWKWA+PEEV+EQAVDYKRPTYEEVMKTFA YLDGNKISTKCKSSKW
Sbjct: 142 EADVEFAEWKWASPEEVIEQAVDYKRPTYEEVMKTFAAYLDGNKISTKCKSSKW 173

[Close]

BLAST of Lsi04G011630 vs. NCBI nr
Match: XP_004151519.1 (nudix hydrolase 25 [Cucumis sativus] >KGN49559.1 hypothetical protein Csa_018423 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 1.8e-79
Identity = 150/174 (86.21%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           QVFVASRLNVPGAWQMPQ                      GGIEDGEDPKLAAVRELRKE
Sbjct: 22  QVFVASRLNVPGAWQMPQ----------------------GGIEDGEDPKLAAVRELRKE 81

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TGIVSAE+VAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND
Sbjct: 82  TGIVSAEMVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 141

Query: 122 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL+GNKISTKCKSSKW
Sbjct: 142 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLNGNKISTKCKSSKW 173

[Close]

BLAST of Lsi04G011630 vs. NCBI nr
Match: XP_022150013.1 (nudix hydrolase 25 [Momordica charantia])

HSP 1 Score: 305.4 bits (781), Expect = 3.1e-79
Identity = 148/174 (85.06%), Postives = 151/174 (86.78%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           QVFVASRLNVPGAWQMPQ                      GGIEDGEDPKLAAVRELRKE
Sbjct: 22  QVFVASRLNVPGAWQMPQ----------------------GGIEDGEDPKLAAVRELRKE 81

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TGIVSAEIVAEVP+WLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMR TKDDSEINLDND
Sbjct: 82  TGIVSAEIVAEVPQWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRFTKDDSEINLDND 141

Query: 122 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           EAD+EFAEWKWANPEEV+EQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW
Sbjct: 142 EADIEFAEWKWANPEEVIEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 173

[Close]

BLAST of Lsi04G011630 vs. NCBI nr
Match: XP_008454739.1 (PREDICTED: nudix hydrolase 25 isoform X1 [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 5.2e-79
Identity = 148/174 (85.06%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           QVFVAS+LNVPGAWQMPQ                      GGIEDGEDPKLAA+RELRKE
Sbjct: 22  QVFVASKLNVPGAWQMPQ----------------------GGIEDGEDPKLAAIRELRKE 81

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TGIVSAE+VAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND
Sbjct: 82  TGIVSAEMVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 141

Query: 122 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL+GNKISTKCKSSKW
Sbjct: 142 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLNGNKISTKCKSSKW 173

[Close]

BLAST of Lsi04G011630 vs. NCBI nr
Match: XP_038891479.1 (nudix hydrolase 25 [Benincasa hispida])

HSP 1 Score: 300.4 bits (768), Expect = 9.8e-78
Identity = 148/174 (85.06%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           QVFVASRLNVPGAWQMPQ                      G IEDGEDPKLAAVRELRKE
Sbjct: 22  QVFVASRLNVPGAWQMPQ----------------------GEIEDGEDPKLAAVRELRKE 81

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TGIVSAEIVAEVPKWLTYDFPPAVKTKV+RLWGGQWHGQAQKWFLMRLTKDDSEINLDND
Sbjct: 82  TGIVSAEIVAEVPKWLTYDFPPAVKTKVSRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 141

Query: 122 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           EADVEFAEWKWANP EVVEQAVDYKRPTYEEVMKTF PYLDGNKISTKCKSSKW
Sbjct: 142 EADVEFAEWKWANPAEVVEQAVDYKRPTYEEVMKTFGPYLDGNKISTKCKSSKW 173

[Close]

BLAST of Lsi04G011630 vs. NCBI nr
Match: XP_022941711.1 (nudix hydrolase 25 [Cucurbita moschata])

HSP 1 Score: 294.7 bits (753), Expect = 5.4e-76
Identity = 144/174 (82.76%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           QVFVASRLNVPGAWQMPQ                      GGIEDGED KLAAVREL+KE
Sbjct: 22  QVFVASRLNVPGAWQMPQ----------------------GGIEDGEDLKLAAVRELKKE 81

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TG+VSAEIVAEVPKWLTYDFP AVKTKVNRLWGGQWHGQAQKWFLMR+TKDDSEINLDND
Sbjct: 82  TGVVSAEIVAEVPKWLTYDFPSAVKTKVNRLWGGQWHGQAQKWFLMRMTKDDSEINLDND 141

Query: 122 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           EADVEFAEWKWA+PEEV+EQAVDYKRPTYEEVMKTFA YLDGNKISTKCKSSKW
Sbjct: 142 EADVEFAEWKWASPEEVIEQAVDYKRPTYEEVMKTFAAYLDGNKISTKCKSSKW 173

[Close]

BLAST of Lsi04G011630 vs. TAIR 10
Match: AT1G30110.1 (nudix hydrolase homolog 25 )

HSP 1 Score: 245.7 bits (626), Expect = 2.7e-65
Identity = 120/175 (68.57%), Postives = 136/175 (77.71%), Query Frame = 0


Query: 3   VFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKET 62
           VFVASRLNVPGAWQMPQ                      GGIEDGEDPK AA+REL++ET
Sbjct: 23  VFVASRLNVPGAWQMPQ----------------------GGIEDGEDPKSAAMRELQEET 82

Query: 63  GIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRL--TKDDSEINLDN 122
           G+VSAEIV+EVP WLTYDFPPAVK KVNRLWGG+WHGQAQKW+L+RL   +D+ EINL N
Sbjct: 83  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 142

Query: 123 DEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           +EAD EFAEWKWA PEEVVEQAVDYKRPTYEEV+KTF  +L+    + KCKS+KW
Sbjct: 143 NEADSEFAEWKWAKPEEVVEQAVDYKRPTYEEVIKTFGSFLNDTGRAAKCKSAKW 175

[Close]

BLAST of Lsi04G011630 vs. TAIR 10
Match: AT1G30110.2 (nudix hydrolase homolog 25 )

HSP 1 Score: 245.7 bits (626), Expect = 2.7e-65
Identity = 120/175 (68.57%), Postives = 136/175 (77.71%), Query Frame = 0


Query: 3   VFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKET 62
           VFVASRLNVPGAWQMPQ                      GGIEDGEDPK AA+REL++ET
Sbjct: 23  VFVASRLNVPGAWQMPQ----------------------GGIEDGEDPKSAAMRELQEET 82

Query: 63  GIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRL--TKDDSEINLDN 122
           G+VSAEIV+EVP WLTYDFPPAVK KVNRLWGG+WHGQAQKW+L+RL   +D+ EINL N
Sbjct: 83  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 142

Query: 123 DEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 176
           +EAD EFAEWKWA PEEVVEQAVDYKRPTYEEV+KTF  +L+    + KCKS+KW
Sbjct: 143 NEADSEFAEWKWAKPEEVVEQAVDYKRPTYEEVIKTFGSFLNDTGRAAKCKSAKW 175

[Close]

BLAST of Lsi04G011630 vs. TAIR 10
Match: AT3G10620.1 (nudix hydrolase homolog 26 )

HSP 1 Score: 172.2 bits (435), Expect = 3.8e-43
Identity = 80/161 (49.69%), Postives = 107/161 (66.46%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           ++F ASRL++P AWQMPQ                      GGI++GEDP++A +REL++E
Sbjct: 77  KIFTASRLDIPSAWQMPQ----------------------GGIDEGEDPRVAVMRELKEE 136

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TG+ SAEI+AE P W+TYDFPP V+ K+   WG  W GQAQKWFL++ T  D EINL  D
Sbjct: 137 TGVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGD 196

Query: 122 EAD-VEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL 162
             +  EF EW W +P++VVE AV++K+P Y+EVM  FA +L
Sbjct: 197 GTEKPEFGEWSWTSPDQVVENAVEFKKPVYKEVMSAFASHL 215

[Close]

BLAST of Lsi04G011630 vs. TAIR 10
Match: AT5G06340.1 (nudix hydrolase homolog 27 )

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-38
Identity = 77/160 (48.12%), Postives = 98/160 (61.25%), Query Frame = 0


Query: 2   QVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKE 61
           ++F AS++++P  WQMPQ                      GG ++GED + AA RELR+E
Sbjct: 76  KIFTASKIHIPDTWQMPQ----------------------GGADEGEDLRNAAFRELREE 135

Query: 62  TGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND 121
           TG+ SAE +AE+P WLTYDFP  VK K+NR W   + GQAQKWFL + T  + EINL  D
Sbjct: 136 TGVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLGD 195

Query: 122 -EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPY 161
             A  EF  W W  PE+V+E AV +KRP YE V+K F PY
Sbjct: 196 GTAKPEFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNPY 213

The following BLAST results are available for this feature:

BLAST of Lsi04G011630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6Z2	3.8e-64	68.57	Nudix hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=NUDT25 PE=1 SV=1	[more]
Q9CAF2	5.3e-42	49.69	Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT26 PE=1...	[more]
Q9FNH4	5.1e-37	48.13	Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT27 PE=1...	[more]
A3PMX6	9.7e-28	41.98	RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4...	[more]
Q3IZC1	9.7e-28	41.98	RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / DSM 158...	[more]

BLAST of Lsi04G011630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL56	8.7e-80	86.21	Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G00...	[more]
A0A6J1D8B1	1.5e-79	85.06	nudix hydrolase 25 OS=Momordica charantia OX=3673 GN=LOC111018292 PE=3 SV=1	[more]
A0A1S3BZA8	2.5e-79	85.06	nudix hydrolase 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495074 PE=3 SV=1	[more]
A0A6J1JPJ6	2.6e-76	82.76	nudix hydrolase 25 OS=Cucurbita maxima OX=3661 GN=LOC111488683 PE=3 SV=1	[more]
A0A6J1FLV4	2.6e-76	82.76	nudix hydrolase 25 OS=Cucurbita moschata OX=3662 GN=LOC111446990 PE=3 SV=1	[more]

BLAST of Lsi04G011630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151519.1	1.8e-79	86.21	nudix hydrolase 25 [Cucumis sativus] >KGN49559.1 hypothetical protein Csa_018423...	[more]
XP_022150013.1	3.1e-79	85.06	nudix hydrolase 25 [Momordica charantia]	[more]
XP_008454739.1	5.2e-79	85.06	PREDICTED: nudix hydrolase 25 isoform X1 [Cucumis melo]	[more]
XP_038891479.1	9.8e-78	85.06	nudix hydrolase 25 [Benincasa hispida]	[more]
XP_022941711.1	5.4e-76	82.76	nudix hydrolase 25 [Cucurbita moschata]	[more]

BLAST of Lsi04G011630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30110.1	2.7e-65	68.57	nudix hydrolase homolog 25	[more]
AT1G30110.2	2.7e-65	68.57	nudix hydrolase homolog 25	[more]
AT3G10620.1	3.8e-43	49.69	nudix hydrolase homolog 26	[more]
AT5G06340.1	3.6e-38	48.13	nudix hydrolase homolog 27	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 1..161 e-value: 1.6E-37 score: 130.8
None	No IPR available	PANTHER	PTHR11839	UDP/ADP-SUGAR PYROPHOSPHATASE	coord: 40..175 coord: 3..23
None	No IPR available	PANTHER	PTHR11839:SF27	BNACNNG74470D PROTEIN	coord: 40..175 coord: 3..23
IPR000086	NUDIX hydrolase domain	PFAM	PF00293	NUDIX	coord: 12..151 e-value: 8.0E-15 score: 55.0
IPR000086	NUDIX hydrolase domain	PROSITE	PS51462	NUDIX	coord: 1..155 score: 16.12043
IPR022927	RNA pyrophosphohydrolase RppH	CDD	cd03671	Ap4A_hydrolase_plant_like	coord: 2..157 e-value: 1.23338E-57 score: 175.472
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	55811	Nudix	coord: 41..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G011630.1	Lsi04G011630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015967	diadenosine tetraphosphate catabolic process
biological_process	GO:0019693	ribose phosphate metabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0034432	bis(5'-adenosyl)-pentaphosphatase activity
molecular_function	GO:0004081	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity
molecular_function	GO:0008893	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity