Lsi04G011170 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G011170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 14543158 .. 14543985 (-)
RNA-Seq ExpressionLsi04G011170
SyntenyLsi04G011170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACAGGACCAGCTTCGCCTTGTAGCTTCGACCTACGATGTACGAGAGAACAAAAGAGAGCAAAAGCTTCTCTTGAGACCCTGCAGCTCTGACCAATGCTGCGGGACCAAAGTGAGAAAGAGAGAGAGAGGACGTGATCTGACGAAGAGAGAGTAAATGATGAAAGGAAGCGAGAGCCAGACTTTTTCGCATGGATGAGTTCATTTTAGTAATTTCACCTCAACTTGACTTTAGAAGGTAAAAAAAAACTTGTTTTAAAAAGGGGAGGTAAACTATTTACACAAAATAACAAAATTTTTAAATAGTTGTGATAGACACTGATAGAAATCTATCAGGATCTATCCGTAATAGAAATGATAGACGTCTATCACCTGATAAAAGTTTATCCATATCTATCCGTATTGTTTTTTTTGCTATTTTATGTAAATGGTTTGACATTTTTTTTATTTGTGAAAATTTTCCTTTTAAAAAAGCAAGCAATTTTTCATCTCTCCCCCATTTTTTGTAATCAAACCGCCGGACCCAATTTCTCCATAAGTTTAATCTATCAAATAATCCCAAACTCCAGTGTCATTTTCTCTTTGCCTCATCCTCACGGCGTCGACCCCCTCCCCTCTCTCTGCTTAGTTTTTCCCCGGCGGTGACCAGACTGCAAAGACCCACGAATCAGCGGTGGTTGGACGGTTCCGGCGTTACCCACGAAATCCAATCCAAGTGACTGTGTACTCTTCGTGGGTGAACTCTTGGACGCGCGTCTACTTCTGCAACGATGTCTGGCGGCACGTGCGAATGCTACACCAGCAGCGGTTACCGGCGACTCCGTGA

mRNA sequence

ATGATACAGGACCAGCTTCGCCTTGTAGCTTCGACCTACGATACTGCAAAGACCCACGAATCAGCGGTGGTTGGACGGTTCCGGCGTTACCCACGAAATCCAATCCAAGTGACTGTGTACTCTTCGTGGGTGAACTCTTGGACGCGCGTCTACTTCTGCAACGATGTCTGGCGGCACGTGCGAATGCTACACCAGCAGCGGTTACCGGCGACTCCGTGA

Coding sequence (CDS)

ATGATACAGGACCAGCTTCGCCTTGTAGCTTCGACCTACGATACTGCAAAGACCCACGAATCAGCGGTGGTTGGACGGTTCCGGCGTTACCCACGAAATCCAATCCAAGTGACTGTGTACTCTTCGTGGGTGAACTCTTGGACGCGCGTCTACTTCTGCAACGATGTCTGGCGGCACGTGCGAATGCTACACCAGCAGCGGTTACCGGCGACTCCGTGA

Protein sequence

MIQDQLRLVASTYDTAKTHESAVVGRFRRYPRNPIQVTVYSSWVNSWTRVYFCNDVWRHVRMLHQQRLPATP
Homology
[Close]
BLAST of Lsi04G011170 vs. ExPASy TrEMBL
Match: A0A0A0KTV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G628690 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 18  THESAVVGRFRRYPRNPIQ-VTVYSSWVNSWTRVYFCNDVWRHVRMLHQQRLPA 71
           T E AV+ RF RYPRNPI  VTV+SS VNS T VYF NDV +HV MLH Q LPA
Sbjct: 126 TREPAVLRRFWRYPRNPIHVVTVFSSLVNSSTVVYFGNDVRQHVGMLHLQPLPA 179

The following BLAST results are available for this feature:
BLAST of Lsi04G011170 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G011170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTV33.6e-0868.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G628690 PE=4 SV=1[more]
BLAST of Lsi04G011170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi04G011170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G011170.1Lsi04G011170.1mRNA