Lsi04G004540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G004540
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 4317766 .. 4321243 (+)
RNA-Seq ExpressionLsi04G004540
SyntenyLsi04G004540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGGTCTTGAAGTTATTTTAAAATAGTCTCTCACCAATTGGACCTATGACTCACTAATTATTTTCATTTTTTTTGTATGAACACTTCCAAAATTTATATGAATTATTCGATAGATTAGCCTAAAAAAATTGGGTCAAAATGTCACATTGTTTTTTCTCTGTGATTCCTTTTTTGTATTCCGTCTCAATAATGATTATGCTCCCTTCCTCTGACAATGCATTGCAATCGGTGGCCATAAACATAGCTTTTTCAAATGCCAAATGAACTAACTGTAGAATGCAAGAGCAAGAAAGTGAGAAAGAGCGAGAAAGTGAGCTAGAACCATAGCAAGAGCTCGAAAAGAAAAAAATAATCATAAAAAAATCTTGATGATGCCAACAAAAGGTCAGAAAGTTCTATTTTGAAAAAGCCGATCAAGTTTCATTTTTTCAAAAAAATTTAAGTCCTCCATACAAAAAAACCCAAGTTATATTTCTTTTAACTTTTCACATATGTATCATATGTGATCAATTTAAGTACTTGAATCAATTTTTGGAACTGATGTTACGTGATGTATCCGACTCTCAACTTCATGCTTTCCTATAAACTAATACTTGTATCCATCATCCATCCCATTGCTTGCAGGAGCAGCTTAAACTTCTAGGCAAGACTCAGGGCTGCTGACGCATCTGGAAACTGAAGGTATATGCATTATGCAGCATCCTCCAATTGGTTTATTCTTGAGCACAAATTAACCTTTCAAAATTTTCTATGATCGACAATTGTTTCTCAAATGCACTGAAAAAGCATCAAACGGATGCCAGAATAAGTATCCTTGTGTTGGTTTAATATTTATTACTTGCTTGTTAGTGTCCCAATTATTCTTTCAGGCTCTTAAAGAACTTACTGACACACTGTCAAGAGATTTTTATAGAAGACCAACCAAGAGCCCTGCACAGGTTTGAAGACTTTTGGATTCATCTTGATCCTTCCTCTGTTTTCAGATTATTAGTGTATGCATGTGGAAGAAGTGATTGATGTTGACTGATGTGCAAGTATTCATAATATACTCTGAGAAATTGGATTACTCCTTCTCACAAATAAACTTTAGTATTGAGAAATTCAGTTTACCTCTAGATTCTACAAAATTAGTGATATGTAAGGGTTTTTAGGTGCAAACAAAGTTGGTTAGGAAAGAGAGAAACCCATGGTATATAAGTAAAAACAATTTTTCCCATTAGTACGAGACTTTTTGGGTGGTTCTAAAAGTAAAGTCATGAAGGTTTATGTCCAAGATAAACAATAACATACCATTGTGGAGATAGGTAGAAGTTTCATTGTCCTTGTTAATTAGTATCAGAGCTATAGTCTAAACCTAGTTGTCTGGGTGAGATCCTAAGTGATTTCGAACAAAAGTTAGGGAGTCTTGTAGATGAATCTCCAGATCGAACCAAGAATGATTGAGATGCAGTAAGCAAGTAGAGCTCTATCAAATCAAGTGGATAAAATTCACTAGTACTGTCGCTTCTTCTAGTTCATTGTTTCTTCATAATCACTATTTATTACATTATCCTTTCTTTTCTTGCTTTTTTGTTCTTATTTTAAGATTTTTGAAATAGAAAAGTTGTAACATTATATTTTAGAATGCTCGTCAATTTACATTTATCTAATTTAACATTAGGTAAATTCTTCCAATACATTTCATTTCCCACGTGTATAACTTTCTTCACCGTTTAAAAGTCCAATAATCATAAATGTTTATTATTGTTATGGTGACTAGAAGGAAGTAAACATGGAATAGAAAAGAGATTATCATAAAACAAGTTCAGTTATATGAGAGCTCTTGAAAGCCACAGAGTATAAAGAATGTGTTATGTTTGTTTGGCTTCACCCAACCAGTCGACACAACCAAAAAAAGAAAAACTAAACTTGTGAGTTGAGCAGTTGACCCCAAGAATTAGTATTATGAATCTGTTTGTCGACCGCGATGTGTGCTAGAATTTGGAGTTGAAATTTAGCAAGGGCGACCAACGAAGCAGGCGAGCGCACCTGCAAAACGTGTCATTCTTGTAACGTATGTCCCTTGTTTATAGGAGATCATATCCATCCTTGAGAAGGGTCTTCTCTTGCTTTGATCGCCTGAGGTAACAAAGAATGCTCCATTCATCATCAAGTCTCCCTCTGATCTCCATGTCCAGCTTTTCCACACCTCCTCTGGTGAGTACTCTCTCTTTGTCACCTGATTTAAGTTCACACCCATTTTTAGTTTCTAGACAAAATTAAAAGCAAATGAATTGCTTGAGCTGTTTGTTAAATATTTGATTACCTCTTTGGCATATACATTGGGAGGAGCAATGAAGCGATTTCCCTGGCTGATAATGGTGGGATGCTGGCTACCACCAATGGCATACATAAGCCAATGAGTGTAGTCATTGTTCACAACATGGAAGAAGCCCCATCGACACCTTGGCATCCTCTGTACCAATCCTTGACCAAAGTGGTTGAATGCTACAGTCACTTGCATTATCTGATCATTCGAGTACCCGTCACTCGCTCCAAACAACATCACCTGTATATAACTTAGCTTTTAACTTCAATTATATAAAACCATCAGTCACATTGTTTCAGGATAAGATACATTATTACCTCATTATGGTGAGTGAAGTGGCAATTGGATATAGTGATGGCAGTGGATCCCATAATGGCATCAATGAGACCATCATGACAATTGGACATGGAAACATGGTCAATCCAAACATTGGAGGAACCAAAGATGGAAATGCCGTCACCATCGCTCATAGTCCTCAAACCCACATGGTCGACAGCATCTCGAATCATTCCACCGCTACCGACGACAATGTGATGGATACGAAGGCCGTGGATGATGACATTTTTGATGTACTGAAGAGTAATGCCAGCCCCATAAGCAATCTGAACATTGGCCCCTCTTGCATCAATGGTCTTGTCGCTGGTCACGATGAGCTCCTGAGTGAGCCTAATGGCCATGTTGGTAGAGAAGATGATCCACAGAGGTCCCTTTTGGATCACAGCATGACGAAGAGTCCCAGGTTTCGGGTTCATGAGGTCCGAATCCGACGAGTCATTCACGACGTAGTATGGACCCAACTTTCCACCAATGGTCTTGCGGCCAAAACCCAAAACACAATCGGCTAGCTTCTTCCGGTTATTGGCCCAATTGGGGTCGCATCTCCAGCACCGATCAATGGGATTAGTGGCTCGACATGGGCCTGTATATTTCTTCAAATTCCTCCTCGTACTGTTGCTTCCACTCAATACCCTGCATCAAACTCAACCCCCATTAATTCATTCCCCTAATTCCGAGTTTAGTTCAATGATTAAAGTTGTAAGAAACTACAAATTTCAAACTTACTGGCCAACTTCGGCATTGAAGGAGTTGGTGACGTTCTCAGGATTAGGCTCGAAGGCATCGGTGGCGGCTTTTTCAGCCTCGGCAGCGCGTGCTTTCCAGTAG

mRNA sequence

ATGGAAGGGGCTCTTAAAGAACTTACTGACACACTGTCAAGAGATTTTTATAGAAGACCAACCAAGAGCCCTGCACAGCAAGGGCGACCAACGAAGCAGGCGAGCGCACCTGCAAAACGTGTCATTCTTGTAACGAGATCATATCCATCCTTGAGAAGGGTCTTCTCTTGCTTTGATCGCCTGAGGAGCAATGAAGCGATTTCCCTGGCTGATAATGGTGGGATGCTGGCTACCACCAATGGCATACATAAGCCAATGAGTGTAGTCATTGTTCACAACATGGAAGAAGCCCCATCGACACCTTGGCATCCTCTGTACCAATCCTTGACCAAAGTGGTTGAATGCTACAGTCACTTGCATTATCTGATCATTCGAGTACCCGATAAGATACATTATTACCTCATTATGGTGAGTGAAGTGGCAATTGGATATAGTGATGGCAGTGGATCCCATAATGGCATCAATGAGACCATCATGACAATTGGACATGGAAACATGGTCAATCCAAACATTGGAGGAACCAAAGATGGAAATGCCGTCACCATCGCTCATAGTCCTCAAACCCACATGGTCGACAGCATCTCGAATCATTCCACCGCTACCGACGACAATGTGATGGATACGAAGGCCGTGGATGATGACATTTTTGATGTACTGAAGAGTAATGCCAGCCCCATAAGCAATCTGAACATTGGCCCCTCTTGCATCAATGGTCTTGTCGCTGGTCACGATGAGCTCCTGAGTGAGCCTAATGGCCATGTTGGTAGAGAAGATGATCCACAGAGGTCCCTTTTGGATCACAGCATGACGAAGAGTCCCAGGTTTCGGGTTCATGAGGTCCGAATCCGACGAGTCATTCACGACTATGGACCCAACTTTCCACCAATGGTCTTGCGGCCAAAACCCAAAACACAATCGGCTAGCTTCTTCCGGTTATTGGCCCAATTGGGGTCGCATCTCCAGCACCGATCAATGGGATTAGTGGCTCGACATGGGCCTGTATATTTCTTCAAATTCCTCCTCGTACTGTTGCTTCCACTCAATACCCTGCATCAAACTCAACCCCCATTAATTCATTCCCCTAATTCCGAGTTTAGTTCAATGATTAAAGTTGTAAGAAACTACAAATTTCAAACTTACTGGCCAACTTCGGCATTGAAGGAGTTGGTGACGTTCTCAGGATTAGGCTCGAAGGCATCGGTGGCGGCTTTTTCAGCCTCGGCAGCGCGTGCTTTCCAGTAG

Coding sequence (CDS)

ATGGAAGGGGCTCTTAAAGAACTTACTGACACACTGTCAAGAGATTTTTATAGAAGACCAACCAAGAGCCCTGCACAGCAAGGGCGACCAACGAAGCAGGCGAGCGCACCTGCAAAACGTGTCATTCTTGTAACGAGATCATATCCATCCTTGAGAAGGGTCTTCTCTTGCTTTGATCGCCTGAGGAGCAATGAAGCGATTTCCCTGGCTGATAATGGTGGGATGCTGGCTACCACCAATGGCATACATAAGCCAATGAGTGTAGTCATTGTTCACAACATGGAAGAAGCCCCATCGACACCTTGGCATCCTCTGTACCAATCCTTGACCAAAGTGGTTGAATGCTACAGTCACTTGCATTATCTGATCATTCGAGTACCCGATAAGATACATTATTACCTCATTATGGTGAGTGAAGTGGCAATTGGATATAGTGATGGCAGTGGATCCCATAATGGCATCAATGAGACCATCATGACAATTGGACATGGAAACATGGTCAATCCAAACATTGGAGGAACCAAAGATGGAAATGCCGTCACCATCGCTCATAGTCCTCAAACCCACATGGTCGACAGCATCTCGAATCATTCCACCGCTACCGACGACAATGTGATGGATACGAAGGCCGTGGATGATGACATTTTTGATGTACTGAAGAGTAATGCCAGCCCCATAAGCAATCTGAACATTGGCCCCTCTTGCATCAATGGTCTTGTCGCTGGTCACGATGAGCTCCTGAGTGAGCCTAATGGCCATGTTGGTAGAGAAGATGATCCACAGAGGTCCCTTTTGGATCACAGCATGACGAAGAGTCCCAGGTTTCGGGTTCATGAGGTCCGAATCCGACGAGTCATTCACGACTATGGACCCAACTTTCCACCAATGGTCTTGCGGCCAAAACCCAAAACACAATCGGCTAGCTTCTTCCGGTTATTGGCCCAATTGGGGTCGCATCTCCAGCACCGATCAATGGGATTAGTGGCTCGACATGGGCCTGTATATTTCTTCAAATTCCTCCTCGTACTGTTGCTTCCACTCAATACCCTGCATCAAACTCAACCCCCATTAATTCATTCCCCTAATTCCGAGTTTAGTTCAATGATTAAAGTTGTAAGAAACTACAAATTTCAAACTTACTGGCCAACTTCGGCATTGAAGGAGTTGGTGACGTTCTCAGGATTAGGCTCGAAGGCATCGGTGGCGGCTTTTTCAGCCTCGGCAGCGCGTGCTTTCCAGTAG

Protein sequence

MEGALKELTDTLSRDFYRRPTKSPAQQGRPTKQASAPAKRVILVTRSYPSLRRVFSCFDRLRSNEAISLADNGGMLATTNGIHKPMSVVIVHNMEEAPSTPWHPLYQSLTKVVECYSHLHYLIIRVPDKIHYYLIMVSEVAIGYSDGSGSHNGINETIMTIGHGNMVNPNIGGTKDGNAVTIAHSPQTHMVDSISNHSTATDDNVMDTKAVDDDIFDVLKSNASPISNLNIGPSCINGLVAGHDELLSEPNGHVGREDDPQRSLLDHSMTKSPRFRVHEVRIRRVIHDYGPNFPPMVLRPKPKTQSASFFRLLAQLGSHLQHRSMGLVARHGPVYFFKFLLVLLLPLNTLHQTQPPLIHSPNSEFSSMIKVVRNYKFQTYWPTSALKELVTFSGLGSKASVAAFSASAARAFQ
Homology
BLAST of Lsi04G004540 vs. ExPASy TrEMBL
Match: A0A287GWW5 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.3e-40
Identity = 87/222 (39.19%), Postives = 141/222 (63.51%), Query Frame = 0

Query: 66  AISLADNGGMLATTNGIHKPMSVVIVHNMEEAPSTPWHPLYQSLTKVVECYSHLHYLIIR 125
           A+ LA +G + A+++G+H P+SVVIVH+ME     PWHPL +   ++VE Y  LH L++ 
Sbjct: 12  AVPLAVDGRLGASSDGVHLPVSVVIVHHMEVTMPAPWHPLDEPFPEMVESYGDLHCLVLE 71

Query: 126 VPDKI--HYYLIMVSEVAIGYSDGSGSHNGINETIMTIGHGNMVNPNIGGTKDGNAVTIA 185
           V   +   ++LI+V EV +G+SDG G+H+G++E +  +G G +V+P++ G +DG+ V + 
Sbjct: 72  VGVTVTQEHHLIVVGEVVVGHSDGGGTHDGVDEAVGAVGEGAVVDPDVAGAEDGDGVAVG 131

Query: 186 HSPQTHMVDSISNHSTATDDNVMDTKAVDDDIFDVLKSNASPISNLNIGPSCINGLVAGH 245
                 +    ++H  A    V+D +AVDDD+ DVL  +A  + ++++G + ++GL A H
Sbjct: 132 DGAPPVVAGGAAHHGVAGGAAVVDVEAVDDDVGDVLDGDAGAVGDVHVGAAAVDGLEAVH 191

Query: 246 DELLSEPNGHVGREDDPQRSLLDHSMTKSPRFRVHEVRIRRV 286
           DELL+E + HV  EDDPQR +LD  + +     VH V + RV
Sbjct: 192 DELLAEGDDHVALEDDPQRLVLDDGVAQGALLGVHGVVVARV 233

BLAST of Lsi04G004540 vs. ExPASy TrEMBL
Match: C4IZH1 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.8e-34
Identity = 89/246 (36.18%), Postives = 144/246 (58.54%), Query Frame = 0

Query: 51  LRRVFSCFDRLRS-----NEAISLADNGGMLATTNGIHKPMSVVIVHNMEEAPSTPWHPL 110
           LRRV    D LR      + A++LAD+GG LA  +G+H+P+ VV+V ++EEAP+ PWHPL
Sbjct: 87  LRRVMLLGDLLRGKVGRRDVAVALADDGGGLAAADGVHEPVRVVVVDHVEEAPAAPWHPL 146

Query: 111 YQSLTKVVECYSHLHYLII--RVPDKIHYYLIMVSEVAIGYSDGSGSHNGINETIMTIGH 170
           +++  +VVE  S LH L++   V     + +++V EVA+G  D  G  + ++E ++ +G 
Sbjct: 147 HEASAEVVEGDSDLHDLVLGMLVAGAEEHDIVVVGEVAVGDGDAGGLGDDVDEAVLAVGE 206

Query: 171 GNMVNPNIGGTKDGNAVTIAHSPQTHMVDSISNHSTAT--DDNVMDTKAVDDDIFDVLKS 230
           G +V P++GG +DG+AV +       +V  +++ +      D+V+D   VDDD+ D L+ 
Sbjct: 207 GEVVQPHVGGAEDGDAVAVGDGAPAEVVRRVADVAAVLVGGDDVVDVDVVDDDVVDELQR 266

Query: 231 NASPISNLNIGPSCINGLVAGHDELLSEPNGHVGREDDPQRSLLDHSMTKSPRFRVHEVR 288
               + + ++  + +NGLVA  DELL + + H   E DPQR  LD +  +    RVH V 
Sbjct: 267 ELRAVGDAHLHAAAVNGLVAADDELLLKRDDHGLGEGDPQRLDLDDAPPERAGARVHHVV 326

BLAST of Lsi04G004540 vs. ExPASy TrEMBL
Match: A0A287TZ69 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-28
Identity = 77/225 (34.22%), Postives = 134/225 (59.56%), Query Frame = 0

Query: 66  AISLADNGGMLATTNGIHKPMSVVIVHNMEEAPSTPWHPLYQSLTKVVECYSHLHYLIIR 125
           A+ LAD+GG+ A +NG+H+P+ VV+V ++EEA +   HPL+++  +V+E    LH+L++ 
Sbjct: 152 AVPLADDGGLAAASNGVHEPVCVVVVDDVEEAVAASGHPLHEASPEVIEGDGDLHHLVLG 211

Query: 126 --VPDKIHYYLIMVSEVAIGYSDGSGSHNGINETIMTIGHGNMVNPNIGGTKDGNAVTIA 185
             V     +++++V EVA+G  DG G  + ++  ++   HG +V+P++ G +DG+AV + 
Sbjct: 212 LVVVGAEEHHVVVVGEVAVGDGDGGGGGHHVDHAVLAERHGEVVDPHVCGVEDGDAVAVG 271

Query: 186 HSPQTHMVDSISNHSTATDDNVMDTKAVDDDIFDVLKSNASPISNLNIGPSCINGLVAGH 245
                 +V    + +     +V+D + VDDD+  VL   A+ + ++++  + + GLVA  
Sbjct: 272 ACADGGVVCRQRHVAAVRVLDVVDVEVVDDDVVLVLDGEAAAVGDVHLRAAPVEGLVALD 331

Query: 246 DELLSEPNGHVGREDDPQRSLLDHSMTKSPRFRVHEVRIRRVIHD 289
            +LL   + HV  EDDPQR  LDH+  +    RV EV +  V HD
Sbjct: 332 YDLLGRVDDHVPGEDDPQRLQLDHAPPERAGTRVGEVLVAWVRHD 376

BLAST of Lsi04G004540 vs. ExPASy TrEMBL
Match: A0A287U006 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-28
Identity = 77/225 (34.22%), Postives = 134/225 (59.56%), Query Frame = 0

Query: 66  AISLADNGGMLATTNGIHKPMSVVIVHNMEEAPSTPWHPLYQSLTKVVECYSHLHYLIIR 125
           A+ LAD+GG+ A +NG+H+P+ VV+V ++EEA +   HPL+++  +V+E    LH+L++ 
Sbjct: 24  AVPLADDGGLAAASNGVHEPVCVVVVDDVEEAVAASGHPLHEASPEVIEGDGDLHHLVLG 83

Query: 126 --VPDKIHYYLIMVSEVAIGYSDGSGSHNGINETIMTIGHGNMVNPNIGGTKDGNAVTIA 185
             V     +++++V EVA+G  DG G  + ++  ++   HG +V+P++ G +DG+AV + 
Sbjct: 84  LVVVGAEEHHVVVVGEVAVGDGDGGGGGHHVDHAVLAERHGEVVDPHVCGVEDGDAVAVG 143

Query: 186 HSPQTHMVDSISNHSTATDDNVMDTKAVDDDIFDVLKSNASPISNLNIGPSCINGLVAGH 245
                 +V    + +     +V+D + VDDD+  VL   A+ + ++++  + + GLVA  
Sbjct: 144 ACADGGVVCRQRHVAAVRVLDVVDVEVVDDDVVLVLDGEAAAVGDVHLRAAPVEGLVALD 203

Query: 246 DELLSEPNGHVGREDDPQRSLLDHSMTKSPRFRVHEVRIRRVIHD 289
            +LL   + HV  EDDPQR  LDH+  +    RV EV +  V HD
Sbjct: 204 YDLLGRVDDHVPGEDDPQRLQLDHAPPERAGTRVGEVLVAWVRHD 248

BLAST of Lsi04G004540 vs. ExPASy TrEMBL
Match: A0A287TZ68 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-28
Identity = 77/225 (34.22%), Postives = 134/225 (59.56%), Query Frame = 0

Query: 66  AISLADNGGMLATTNGIHKPMSVVIVHNMEEAPSTPWHPLYQSLTKVVECYSHLHYLIIR 125
           A+ LAD+GG+ A +NG+H+P+ VV+V ++EEA +   HPL+++  +V+E    LH+L++ 
Sbjct: 76  AVPLADDGGLAAASNGVHEPVCVVVVDDVEEAVAASGHPLHEASPEVIEGDGDLHHLVLG 135

Query: 126 --VPDKIHYYLIMVSEVAIGYSDGSGSHNGINETIMTIGHGNMVNPNIGGTKDGNAVTIA 185
             V     +++++V EVA+G  DG G  + ++  ++   HG +V+P++ G +DG+AV + 
Sbjct: 136 LVVVGAEEHHVVVVGEVAVGDGDGGGGGHHVDHAVLAERHGEVVDPHVCGVEDGDAVAVG 195

Query: 186 HSPQTHMVDSISNHSTATDDNVMDTKAVDDDIFDVLKSNASPISNLNIGPSCINGLVAGH 245
                 +V    + +     +V+D + VDDD+  VL   A+ + ++++  + + GLVA  
Sbjct: 196 ACADGGVVCRQRHVAAVRVLDVVDVEVVDDDVVLVLDGEAAAVGDVHLRAAPVEGLVALD 255

Query: 246 DELLSEPNGHVGREDDPQRSLLDHSMTKSPRFRVHEVRIRRVIHD 289
            +LL   + HV  EDDPQR  LDH+  +    RV EV +  V HD
Sbjct: 256 YDLLGRVDDHVPGEDDPQRLQLDHAPPERAGTRVGEVLVAWVRHD 300

BLAST of Lsi04G004540 vs. NCBI nr
Match: ACR34321.1 (unknown [Zea mays])

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-33
Identity = 89/246 (36.18%), Postives = 144/246 (58.54%), Query Frame = 0

Query: 51  LRRVFSCFDRLRS-----NEAISLADNGGMLATTNGIHKPMSVVIVHNMEEAPSTPWHPL 110
           LRRV    D LR      + A++LAD+GG LA  +G+H+P+ VV+V ++EEAP+ PWHPL
Sbjct: 87  LRRVMLLGDLLRGKVGRRDVAVALADDGGGLAAADGVHEPVRVVVVDHVEEAPAAPWHPL 146

Query: 111 YQSLTKVVECYSHLHYLII--RVPDKIHYYLIMVSEVAIGYSDGSGSHNGINETIMTIGH 170
           +++  +VVE  S LH L++   V     + +++V EVA+G  D  G  + ++E ++ +G 
Sbjct: 147 HEASAEVVEGDSDLHDLVLGMLVAGAEEHDIVVVGEVAVGDGDAGGLGDDVDEAVLAVGE 206

Query: 171 GNMVNPNIGGTKDGNAVTIAHSPQTHMVDSISNHSTAT--DDNVMDTKAVDDDIFDVLKS 230
           G +V P++GG +DG+AV +       +V  +++ +      D+V+D   VDDD+ D L+ 
Sbjct: 207 GEVVQPHVGGAEDGDAVAVGDGAPAEVVRRVADVAAVLVGGDDVVDVDVVDDDVVDELQR 266

Query: 231 NASPISNLNIGPSCINGLVAGHDELLSEPNGHVGREDDPQRSLLDHSMTKSPRFRVHEVR 288
               + + ++  + +NGLVA  DELL + + H   E DPQR  LD +  +    RVH V 
Sbjct: 267 ELRAVGDAHLHAAAVNGLVAADDELLLKRDDHGLGEGDPQRLDLDDAPPERAGARVHHVV 326

BLAST of Lsi04G004540 vs. NCBI nr
Match: KAG2384001.1 (uncharacterized protein HKW66_Vig0152360 [Vigna angularis])

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-28
Identity = 78/222 (35.14%), Postives = 130/222 (58.56%), Query Frame = 0

Query: 63  SNEAISLADNGGMLATTNGIHKPMSVVIVHNMEEAPSTPWHPLYQSLTKVVECYSHLHYL 122
           SNE +SLA N    A+TNG+H P+SV++V N+EE+PS PWHPL QSL ++VEC+ +LH L
Sbjct: 70  SNETVSLAKNSRPCASTNGVHHPVSVIVVKNVEESPSAPWHPLDQSLPEMVECHCYLHDL 129

Query: 123 I--IRVPDKIHYYLIMVSEVAIGYSDGSGSHNGINETIMTIGHGNMVNPNIGGTKDGNAV 182
           +  +RV     +++++   VA+G  DG G+ + I++   +IG  N+V   +G        
Sbjct: 130 VLRVRVSRTEQHHIVVSRHVAVGDGDGCGALDHIDQ---SIGRSNVV---VG-------- 189

Query: 183 TIAHSPQTHMVDSISNHSTATDDNVMDTKAVDDDIFDVLKSNASPISNLNIGPSCINGLV 242
                        + +H+T    NV++  +VDDD+   L   A+ + +LN+G + ++GLV
Sbjct: 190 -------------VPDHATLLRHNVLNANSVDDDVVRELYGEATTVLDLNVGTTTVDGLV 249

Query: 243 AGHDELLSEPNGHVGREDDPQRSLLDHSMTKSPRFRVHEVRI 283
            G+++LL + + H   EDDP+ +LL   +++    RV  V +
Sbjct: 250 GGNEKLLLQSDDHAALEDDPKWTLLGDGISEGSWLRVDHVLV 264

BLAST of Lsi04G004540 vs. NCBI nr
Match: ACN33719.1 (unknown [Zea mays])

HSP 1 Score: 136.3 bits (342), Expect = 5.8e-28
Identity = 70/194 (36.08%), Postives = 116/194 (59.79%), Query Frame = 0

Query: 94  MEEAPSTPWHPLYQSLTKVVECYSHLHYLIIRVPDKI--HYYLIMVSEVAIGYSDGSGSH 153
           ME A   PWH L ++ T++VE Y HLH L++ +   +   ++L++V EV +G+ D  GSH
Sbjct: 1   MEVAMPAPWHSLDETFTEMVEGYRHLHCLVLHIGVTVAQEHHLVVVGEVVVGHCDSRGSH 60

Query: 154 NGINETIMTIGHGNMVNPNIGGTKDGNAVTIAHSPQTHMVDSISNHSTATDDNVMDTKAV 213
           + I++ +  +G   +V+P++ GT+DG+ +++ H     +    ++H       V+D + V
Sbjct: 61  DSIDQAVGAVGERAVVHPDVAGTEDGHTISVGHGAPPIVAGRAAHHGVPRGLAVVDVEPV 120

Query: 214 DDDIFDVLKSNASPISNLNIGPSCINGLVAGHDELLSEPNGHVGREDDPQRSLLDHSMTK 273
           DDD+ DVL  +A  I ++++G + ++GL A HDELL E + HV  EDDP+R  LD  + +
Sbjct: 121 DDDVGDVLDGDAGTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFLDDGVAE 180

Query: 274 SPRFRVHEVRIRRV 286
               RV  V I RV
Sbjct: 181 GALARVDRVVIARV 194

BLAST of Lsi04G004540 vs. NCBI nr
Match: ACL53931.1 (unknown [Zea mays])

HSP 1 Score: 135.6 bits (340), Expect = 9.9e-28
Identity = 74/226 (32.74%), Postives = 136/226 (60.18%), Query Frame = 0

Query: 64  NEAISLADNGGMLATTNGIHKPMSVVIVHNMEEAPSTPWHPLYQSLTKVVECYSHLHYLI 123
           +EA++LAD+GG+    +G+H P+ VV+VH++EEA +   HPL+Q   +VVE +  LH+ +
Sbjct: 99  DEAVALADDGGVHVAADGVHDPVRVVVVHHVEEAVAAARHPLHQPAAEVVERHRDLHHRV 158

Query: 124 IR--VPDKIHYYLIMVSEVAIGYSDGSGSHNGINETIMTIGHGNMVNPNIGGTKDGNAVT 183
           +R  V     +++++V EVA+G+ DG    + +++ +   GHG++V+P++ G + G+AV 
Sbjct: 159 LRAVVAGAEQHHVVVVGEVAVGHGDGRRPVHHVDQPVGAAGHGHVVDPHVAGRQHGDAVA 218

Query: 184 IAHSPQTHMVDSISNHSTATDDNVMDTKAVDDDIFDVLKSNASPISNLNIGPSCINGLVA 243
           +A   Q  +   +++H+      V+D + V D +  VL+ +     ++++    ++ LV 
Sbjct: 219 VAPRAQPVVPLRVADHAARVRLGVVDVQVVQDHVLHVLQRDLRE-HDVHLRAPPVDRLVV 278

Query: 244 GHDELLSEPNGHVGREDDPQRSLLDHSMTKSPRFRVHEVRIRRVIH 288
            HD+LL + + HV RE DPQR +LDH + +    R   + + RV H
Sbjct: 279 VHDQLLPQLDHHVAREHDPQRPVLDHGVPQRALPRDDHLVVARVPH 323

BLAST of Lsi04G004540 vs. NCBI nr
Match: KAF7820188.1 (hypothetical protein G2W53_025643 [Senna tora])

HSP 1 Score: 122.9 bits (307), Expect = 6.6e-24
Identity = 71/214 (33.18%), Postives = 123/214 (57.48%), Query Frame = 0

Query: 62  RSNEAISLADNGGMLATTNGIHKPMSVVIVHNMEEAPSTPWHPLYQSLTKVVECYSHLH- 121
           RS+  I L  NG +  +++GIH P+  +++H+M    STP HPL+Q L +V+E   HLH 
Sbjct: 27  RSSIPIPLTVNGRIGTSSDGIHLPLREIVIHHMNIPQSTPRHPLHQPLPEVIERNRHLHP 86

Query: 122 ---YLIIRVPDKIHYYLIMVSEVAIGYSDGSGSHNGINETIMTIGHGNMVNPNIGGTKDG 181
               +++ VP K H  L+++ E+AI   D    H  I++ +  I    +V+P++   +DG
Sbjct: 87  RIRQVLVVVPQKHH--LVVMPEMAIRNRDPRRPHYRIDQPVRAIRQRAVVDPDLARREDG 146

Query: 182 NAVTIAHSPQTHMVDSISNHSTATDDNVMDTKAVDDDIFDVLKSNASPISNLNIGPSCIN 241
           + V +  +P  H+  + ++        V+D   VDDD+ DVL+  A+   ++++G + ++
Sbjct: 147 DPVAVRLAPPPHVRGAGADVGVPGGLAVVDVDVVDDDVGDVLEREAAVAGDVDVGAAAVD 206

Query: 242 GLVAGHDELLSEPNGHVGREDDPQRSLLDHSMTK 272
           G  A  DEL+ E +GHV  EDDP+  +LDH + +
Sbjct: 207 GFEAVEDELVLEGDGHVAGEDDPEGGVLDHGVAE 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A287GWW59.3e-4039.19Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
C4IZH15.8e-3436.18Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
A0A287TZ691.6e-2834.22Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
A0A287U0061.6e-2834.22Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
A0A287TZ681.6e-2834.22Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
ACR34321.11.2e-3336.18unknown [Zea mays][more]
KAG2384001.12.6e-2835.14uncharacterized protein HKW66_Vig0152360 [Vigna angularis][more]
ACN33719.15.8e-2836.08unknown [Zea mays][more]
ACL53931.19.9e-2832.74unknown [Zea mays][more]
KAF7820188.16.6e-2433.18hypothetical protein G2W53_025643 [Senna tora][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G004540.1Lsi04G004540.1mRNA