Lsi04G002470 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G002470
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L15
Location	chr04: 2526544 .. 2529004 (+)
RNA-Seq Expression	Lsi04G002470
Synteny	Lsi04G002470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATCCATGGCTGCCCTTCTTTCCTTATCTTCGACTTCCTTGACCAGAACTGCCACTGCTCTGCCTTATCCAACCACTTCCTTCAAGGTATTTCACTATTCCTTCCCTTCTTCTTTCTTTACTTTCTTAATTTCAAATTCGACACGTTATCTTAGTTCAATTTTCTGCTTCCTTGATGCTTTTATCATTTACGAAACTCTAATTCACTTGCATTTCCAGGGAAATGTGAAGATTCTGAACTCAAAGCAGCTCAGCATTTCTTCACTCAGCCTCAAATTCAAGGTCGGAGATGGTAAACACTTGGTTGTTCGCAACCAGGCTGCTGCCTCTTCCCTGTCTGCCTCCTCCGTCGAGACTGTGCGGTTTCGTCTGGACAATCTCGGACCACAGCCAGGTTCGAGGAAGAAGGGCAAGAGAAAGGGGAGAGGTATATCGGCGGGACAGGGCGGTAGCTGTGGGTTTGGAATGAGAGGACAGAAATCACGGTCTGGACCTGGTGTTAGAAAAGGATTCGAAGGTGGACAAATGCCTCTTTATCGGAGAATCCCCAAACTTAGAGGAATTGCAGGAGGTAATTTCTATCATTCTGCTTAGTTGCCTTTTTTATATGAATTGTAGAACTCTACGTATCTGGCTGGTAGGCGTCCGCAATGGCAATTTCTGCTATAGGTTGTGGTTGCTTCATTGAGTGATAGTCCAAATGATCTTTTCTCTCTTATCTTGAAAACTTCCATTCATTGATCTCACTCTTTACCACTTAATTTCTTTTTACCTATTTAGTACTAGGAGGTTGTTGGACCAATTGCTAATAGTTGTTTTGAATTATTGCACTTGTAATTTGTGTAATTCTTTATTCCTCGATTGGAGGGCATTGGACCTTGTTAGATTTTAGCAGACTAGGGCAAGGGAGAAAGGCAGTCACTCTATAAGATAAGCGGGGTCCTTCTTCCAGTTCCTTGAAGCGTAATTGATAATTCGTTTATGGTGTTTAGGCTAGAGTGATTAGGAATCTTGTATGGTTCATGATGATGGTCTTCAAGTATCCTACAGCGTGGGAGAGAGAATACTCTTCAAACTGGATATAGGAGGTTGTTAATTTACTTTTCGACTTCTGGGAAATGGTAATATGAATGAGACAGGAGGATTATGAAAATGAGGGGAATAGATGATGTCTCAACCTAGCCGAAAGAATTATGAAAAAATGGAAAAACTGGTTGAATGTCTATGAAAGTGTAATTACTCAAGCTCCCAGACAGAGTACACCATCTAAGGACTCAAAAAAAATAACTCTCTAACATAATATCTTGTATGGTTAACCATGTCCTTGTTAAATCACCGATTTACCCGAAAACTTAAGCTGATGGGTGAAGGTAAATTTAATATTATATCATCTGACACTCTCCCTCATTTGTGGGCTTGAAATATGTAGAAGACGAGTAGAAGTCAATATTAATTGGCGAGGAAATTACATTACAAGGGTTTGAACACAAAACCTTTTGGACCACCTTCTCTGATACCATATTAAATCACTCATTCACGCAAAAGCTTTTGGGTCAATACATAATTTAACACTTGTTACTAGCTACTATGCCTTTGGTTAGAATGGTTAGTTTATGAGAGGTATTTCAATCTCATGTAAAGAGAGTTTAGGATCCCCAAAATCAAGGAATCTCATAATATTTGTAAGATTGATGTGGTACTTCTCTCCTTGTCAATTGGTTATGAGATAGAACCTCATGCTATCTAAAAAAGAGAATAGATTTTATGATTTCTGCTTCCTGTTTCTCTTCTCATTTCTTACTTTATCTTATCACCAAAAGAACATTCCGAGATGATGTATCGTGTATGGCATTTGTTTTTCTTGCGGTCACCTTTGTATGAACTTGTGATATTCATGCTGAACAATTGCTTTTGCTTTCAAGGTATGCATGCTGGGTTACCTAAATATGTGCCAGTGAATCTGAAAGACATTGAAGAGGCAGGATTTCAGGAAGGGGAAGAGGTCTCCTTGGAAACTTTAAAAGAGAGGGGTTTGATCAACCCATCAGGAAGAGAAAGAAAACTCCCTTTAAAGGTACTAATGTCACGAGTATCTACATCGTGAATATCCAAATTGACATTGTGATTCCTACTCCAAGAAGTGAAACCAAAACTGAATGATTAAACTTTAAAAAGATGTTTATTAACTCATCAAGGTTCTGGTGACTGATTCATAATTGCTTAACTTTGTCTTTCCTTCAGATTTTAGCGGATGGAGAGCTGAATGTGAAGCTAAATATCAAAGCTCGGGCTTTTTCATCAGCAGCAAAAGAGAAGCTTGAAGCTGCTGGCTGCTCCCTTACTGTATTACCTGGACGAAAGAAGTGGGTTAAGCCATCAGTGGCTAAGAACCTCGCACGTGCGGAGGAATACTTTGCAAAGAAGAAGGCTGCGGCAGCTGCTGCAGAACAGGCTTCTGCT

mRNA sequence

TTTATCCATGGCTGCCCTTCTTTCCTTATCTTCGACTTCCTTGACCAGAACTGCCACTGCTCTGCCTTATCCAACCACTTCCTTCAAGGTATTTCACTATTCCTTCCCTTCTTCTTTCTTTACTTTCTTAATTTCAAATTCGACACGTTATCTTAGTTCAATTTTCTGCTTCCTTGATGCTTTTATCATTTACGAAACTCTAATTCACTTGCATTTCCAGGGAAATGTGAAGATTCTGAACTCAAAGCAGCTCAGCATTTCTTCACTCAGCCTCAAATTCAAGGTCGGAGATGGTAAACACTTGGTTGTTCGCAACCAGGCTGCTGCCTCTTCCCTGTCTGCCTCCTCCGTCGAGACTGTGCGGTTTCGTCTGGACAATCTCGGACCACAGCCAGGTTCGAGGAAGAAGGGCAAGAGAAAGGGGAGAGGTATATCGGCGGGACAGGGCGGTAGCTGTGGGTTTGGAATGAGAGGACAGAAATCACGGTCTGGACCTGGTGTTAGAAAAGGATTCGAAGGTGGACAAATGCCTCTTTATCGGAGAATCCCCAAACTTAGAGGAATTGCAGGAGAACATTCCGAGATGATGTATCGTGTATGGCATTTGTTTTTCTTGCGGTCACCTTTGTATGAACTTGTGATATTCATGCTGAACAATTGCTTTTGCTTTCAAGGTATGCATGCTGGGTTACCTAAATATGTGCCAGTGAATCTGAAAGACATTGAAGAGGCAGGATTTCAGGAAGGGGAAGAGGTCTCCTTGGAAACTTTAAAAGAGAGGGGTTTGATCAACCCATCAGGAAGAGAAAGAAAACTCCCTTTAAAGATTTTAGCGGATGGAGAGCTGAATGTGAAGCTAAATATCAAAGCTCGGGCTTTTTCATCAGCAGCAAAAGAGAAGCTTGAAGCTGCTGGCTGCTCCCTTACTGTATTACCTGGACGAAAGAAGTGGGTTAAGCCATCAGTGGCTAAGAACCTCGCACGTGCGGAGGAATACTTTGCAAAGAAGAAGGCTGCGGCAGCTGCTGCAGAACAGGCTTCTGCT

Coding sequence (CDS)

ATGGCTGCCCTTCTTTCCTTATCTTCGACTTCCTTGACCAGAACTGCCACTGCTCTGCCTTATCCAACCACTTCCTTCAAGGTATTTCACTATTCCTTCCCTTCTTCTTTCTTTACTTTCTTAATTTCAAATTCGACACGTTATCTTAGTTCAATTTTCTGCTTCCTTGATGCTTTTATCATTTACGAAACTCTAATTCACTTGCATTTCCAGGGAAATGTGAAGATTCTGAACTCAAAGCAGCTCAGCATTTCTTCACTCAGCCTCAAATTCAAGGTCGGAGATGGTAAACACTTGGTTGTTCGCAACCAGGCTGCTGCCTCTTCCCTGTCTGCCTCCTCCGTCGAGACTGTGCGGTTTCGTCTGGACAATCTCGGACCACAGCCAGGTTCGAGGAAGAAGGGCAAGAGAAAGGGGAGAGGTATATCGGCGGGACAGGGCGGTAGCTGTGGGTTTGGAATGAGAGGACAGAAATCACGGTCTGGACCTGGTGTTAGAAAAGGATTCGAAGGTGGACAAATGCCTCTTTATCGGAGAATCCCCAAACTTAGAGGAATTGCAGGAGAACATTCCGAGATGATGTATCGTGTATGGCATTTGTTTTTCTTGCGGTCACCTTTGTATGAACTTGTGATATTCATGCTGAACAATTGCTTTTGCTTTCAAGGTATGCATGCTGGGTTACCTAAATATGTGCCAGTGAATCTGAAAGACATTGAAGAGGCAGGATTTCAGGAAGGGGAAGAGGTCTCCTTGGAAACTTTAAAAGAGAGGGGTTTGATCAACCCATCAGGAAGAGAAAGAAAACTCCCTTTAAAGATTTTAGCGGATGGAGAGCTGAATGTGAAGCTAAATATCAAAGCTCGGGCTTTTTCATCAGCAGCAAAAGAGAAGCTTGAAGCTGCTGGCTGCTCCCTTACTGTATTACCTGGACGAAAGAAGTGGGTTAAGCCATCAGTGGCTAAGAACCTCGCACGTGCGGAGGAATACTTTGCAAAGAAGAAGGCTGCGGCAGCTGCTGCAGAACAGGCTTCTGCT

Protein sequence

MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFIIYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRFRLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIEEAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

Homology

[Close]

BLAST of Lsi04G002470 vs. ExPASy Swiss-Prot
Match: P25873 (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL15 PE=1 SV=2)

HSP 1 Score: 307.8 bits (787), Expect = 1.6e-82
Identity = 176/278 (63.31%), Postives = 201/278 (72.30%), Query Frame = 0


Query: 70  FQGNVKILNSKQLSISSLSLKFKVGD------GKHLVVRNQAAASSLSASSVETVRFRLD 129
           F+GNV +L +    I SL L   +         + LVV +Q AA+S +  + E  RFRLD
Sbjct: 27  FKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTAATSSAVVAPE--RFRLD 86

Query: 130 NLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKL 189
           NLGPQPGSRKK KRKGRGISAGQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKL
Sbjct: 87  NLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKL 146

Query: 190 RGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIEEAG 249
           RGIAG                                  GM +GLPKY+PVN+KDIE AG
Sbjct: 147 RGIAG----------------------------------GMRSGLPKYLPVNIKDIETAG 206

Query: 250 FQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLEAAG 309
           FQEG+EVSLETLK++GLINPSGRERKLPLKIL  GEL++KL  KARAFS+ AKEKLEA+G
Sbjct: 207 FQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASG 266

Query: 310 CSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAA 342
           C+LTVLPGRKKWVKPSVAKN ARA+EYFAKK+AAAA A
Sbjct: 267 CTLTVLPGRKKWVKPSVAKNQARADEYFAKKRAAAAEA 268

[Close]

BLAST of Lsi04G002470 vs. ExPASy Swiss-Prot
Match: P31165 (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPL15 PE=2 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 2.1e-82
Identity = 179/278 (64.39%), Postives = 199/278 (71.58%), Query Frame = 0


Query: 70  FQGNVKILNSKQLSISSLSL---KFKVGDGKHLVVRNQAAASSLSASSVETVRFRLDNLG 129
           F+GNVK L +K      L +   K +V       V N+AA++    SS E VRFRLDNLG
Sbjct: 19  FKGNVKTLVAKPCLCPCLKIQRTKLRVS------VVNKAASAYNVKSSGENVRFRLDNLG 78

Query: 130 PQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGI 189
           PQPGSRK+ KRKGRGI+AGQG SCGFGMRGQKSRSGPG+ +GFEGGQMPLYRR+PKLRGI
Sbjct: 79  PQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGI 138

Query: 190 AGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIEEAGFQE 249
           AG                                  GMHAGLPKYV VNL DIE AGFQ+
Sbjct: 139 AG----------------------------------GMHAGLPKYVNVNLTDIENAGFQD 198

Query: 250 GEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLEAAGCSL 309
           GEEVSLETLK + +INPSGRERKLPLKILADGEL+ KL IKA AFS++AKEKLE AGCSL
Sbjct: 199 GEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSL 256

Query: 310 TVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQA 345
            VLPGRKKWVKPSVAKNLARAEEYFAKK+    A+E A
Sbjct: 259 IVLPGRKKWVKPSVAKNLARAEEYFAKKRGGETASEPA 256

[Close]

BLAST of Lsi04G002470 vs. ExPASy Swiss-Prot
Match: P22798 (50S ribosomal protein L15, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL15 PE=1 SV=3)

HSP 1 Score: 295.0 bits (754), Expect = 1.1e-78
Identity = 187/347 (53.89%), Postives = 224/347 (64.55%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MA+LLSLSST    TA +  YP+++FK    +F  + F F                    
Sbjct: 1   MASLLSLSSTP-PSTANSNNYPSSTFKGNINNFRINPFNF-------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSAS--SVETV 120
                + LH +  VK                   +   LVV   A++S++S S  S    
Sbjct: 61  ---APLKLHLRNIVK------------------KESTRLVVVASASSSNVSPSIGSGSET 120

Query: 121 RFRLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYR 180
           RFRLDNLGPQPGSRKKGKRKGRG +AGQGGSCGFGMRGQKSRSGPG+ +GFEGGQMPLYR
Sbjct: 121 RFRLDNLGPQPGSRKKGKRKGRGHAAGQGGSCGFGMRGQKSRSGPGIMRGFEGGQMPLYR 180

Query: 181 RIPKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKD 240
           RIPKLRGIAG                                  GM AGLPKYVP+NL+D
Sbjct: 181 RIPKLRGIAG----------------------------------GMRAGLPKYVPINLRD 240

Query: 241 IEEAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEK 300
           IE AGF+EGEEVSLE+LK +G+INPSGRER+LPLKIL +GEL+ KL IKARAFS +AKEK
Sbjct: 241 IEVAGFKEGEEVSLESLKAKGIINPSGRERRLPLKILGEGELSTKLQIKARAFSGSAKEK 271

Query: 301 LEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQAS 346
           LEAAGCS+TVLPGRKK++K SV KNLARA+EYFAKK+AA+A+  +++
Sbjct: 301 LEAAGCSVTVLPGRKKYIKESVRKNLARADEYFAKKRAASASEAESA 271

[Close]

BLAST of Lsi04G002470 vs. ExPASy Swiss-Prot
Match: P31160 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rplO PE=3 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-29
Identity = 83/189 (43.92%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           +LDNL PQPG++K+ +R GRGI+AGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+
Sbjct: 2   KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRV 61

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKL+                             ++N  F           Y  VN+  + 
Sbjct: 62  PKLKHFP--------------------------LINRKF-----------YTVVNVGAL- 121

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
            AG   G EV+LE+L   G++     +   PLKIL DGEL+V L++ A AF++ A++K+E
Sbjct: 122 -AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIE 147

Query: 301 AAGCSLTVL 310
           AAG S+ ++
Sbjct: 182 AAGGSIALV 147

[Close]

BLAST of Lsi04G002470 vs. ExPASy Swiss-Prot
Match: Q5N0U8 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rplO PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-29
Identity = 83/189 (43.92%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           +LDNL PQPG++K+ +R GRGI+AGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+
Sbjct: 2   KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRV 61

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKL+                             ++N  F           Y  VN+  + 
Sbjct: 62  PKLKHFP--------------------------LINRKF-----------YTVVNVGAL- 121

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
            AG   G EV+LE+L   G++     +   PLKIL DGEL+V L++ A AF++ A++K+E
Sbjct: 122 -AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIE 147

Query: 301 AAGCSLTVL 310
           AAG S+ ++
Sbjct: 182 AAGGSIALV 147

[Close]

BLAST of Lsi04G002470 vs. ExPASy TrEMBL
Match: A0A1S3BFG1 (50S ribosomal protein L15, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489288 PE=3 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 7.9e-117
Identity = 252/346 (72.83%), Postives = 257/346 (74.28%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MAAL SLSSTSLTRTATALPYPTTSFK                                 
Sbjct: 1   MAALFSLSSTSLTRTATALPYPTTSFK--------------------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRF 120
                      GNV ILNSK LSISS  LKFK  DGKHLVVRNQAAASSL AS  + VRF
Sbjct: 61  -----------GNVSILNSKHLSISSPKLKFKAVDGKHLVVRNQAAASSLYASPADNVRF 120

Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           RLDNLGPQPGSRK+GKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 121 RLDNLGPQPGSRKRGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKLRGIAG                                  GMHAGLPKYVPVNLKDIE
Sbjct: 181 PKLRGIAG----------------------------------GMHAGLPKYVPVNLKDIE 240

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
           EAGFQEGEEVSLETLKE+GLINPSGRERKLPLKILADGEL+VKLNIKARAFSSAAKEKLE
Sbjct: 241 EAGFQEGEEVSLETLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLE 268

Query: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA 347
           AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQ+SA
Sbjct: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQSSA 268

[Close]

BLAST of Lsi04G002470 vs. ExPASy TrEMBL
Match: A0A0A0KUI5 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609730 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 1.3e-116
Identity = 253/346 (73.12%), Postives = 257/346 (74.28%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MAAL SLSS SLTRTATALPYPTTSFK                                 
Sbjct: 1   MAALFSLSSPSLTRTATALPYPTTSFK--------------------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRF 120
                      GNV ILNSK LSISSL LK K  DGKHLVVRNQAAASSLSAS  E VRF
Sbjct: 61  -----------GNVNILNSKHLSISSLRLKSKSVDGKHLVVRNQAAASSLSASPAENVRF 120

Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           RLDNLGPQPGSRK+GKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 121 RLDNLGPQPGSRKRGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKLRGIAG                                  GMHAGLPKYVPVNLKDIE
Sbjct: 181 PKLRGIAG----------------------------------GMHAGLPKYVPVNLKDIE 240

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
           EAGFQEGEEVSLE+LKE+GLINPSGRERKLPLKILADGEL+VKLNIKARAFSSAAKEKLE
Sbjct: 241 EAGFQEGEEVSLESLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLE 268

Query: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA 347
           AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
Sbjct: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA 268

[Close]

BLAST of Lsi04G002470 vs. ExPASy TrEMBL
Match: A0A6J1J6D0 (50S ribosomal protein L15, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482969 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 9.6e-115
Identity = 248/344 (72.09%), Postives = 257/344 (74.71%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MAALLSLSS+SLTRTA ALP+PTTSFK                                 
Sbjct: 1   MAALLSLSSSSLTRTAIALPHPTTSFK--------------------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRF 120
                      GNVKILNSKQ S SSL LKFKVGDGK LVVR+QAAASSLSAS VE+VRF
Sbjct: 61  -----------GNVKILNSKQFSFSSLKLKFKVGDGKPLVVRSQAAASSLSASPVESVRF 120

Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           RLDNLGPQ GSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 121 RLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKLRGIAG                                  GMHAGLPKYVPVNLKDIE
Sbjct: 181 PKLRGIAG----------------------------------GMHAGLPKYVPVNLKDIE 240

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
            AGFQEGEEVSLE+LKE+GLINPSGRERKLPLKILADGEL+VKLNIKARAFSSAAKEKLE
Sbjct: 241 AAGFQEGEEVSLESLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLE 266

Query: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQA 345
           A GCSLTVLPGRKKWVKPSVAKNLARA+EYFAKK+AAAAAAEQA
Sbjct: 301 AVGCSLTVLPGRKKWVKPSVAKNLARADEYFAKKRAAAAAAEQA 266

[Close]

BLAST of Lsi04G002470 vs. ExPASy TrEMBL
Match: A0A6J1H0G5 (50S ribosomal protein L15, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111458464 PE=3 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 1.4e-113
Identity = 246/344 (71.51%), Postives = 255/344 (74.13%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MAALLSLSS+SLTRTA ALP+PTT FK                                 
Sbjct: 1   MAALLSLSSSSLTRTAIALPHPTTPFK--------------------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRF 120
                      GNVKILNSKQ S S L LKFKVGDGK LVVR+QAAASSLSAS VE+VRF
Sbjct: 61  -----------GNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQAAASSLSASPVESVRF 120

Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           RLDNLGPQ GSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 121 RLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKLRGIAG                                  GMHAGLPKYVPVNLKDIE
Sbjct: 181 PKLRGIAG----------------------------------GMHAGLPKYVPVNLKDIE 240

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
            AGFQEGEEVSLE+LKE+GLINPSGRERKLPLKILADGEL+VKLNIKARAFSSAAKEKLE
Sbjct: 241 AAGFQEGEEVSLESLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLE 266

Query: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQA 345
           A GCSLTVLPGRKKWVKPSVAKNLARA+EYFAKK+AAAAAAEQA
Sbjct: 301 AVGCSLTVLPGRKKWVKPSVAKNLARADEYFAKKRAAAAAAEQA 266

[Close]

BLAST of Lsi04G002470 vs. ExPASy TrEMBL
Match: A0A6J1DAS8 (50S ribosomal protein L15, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018748 PE=3 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 4.0e-113
Identity = 244/346 (70.52%), Postives = 256/346 (73.99%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MA+LLSLS++SL+R ATA+  PTTSFK                                 
Sbjct: 1   MASLLSLSASSLSRAATAVSLPTTSFK--------------------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRF 120
                      G+VKILNSK  +ISS  LKFKVGDGKHLV RNQAAASSLSASSVE VRF
Sbjct: 61  -----------GDVKILNSKPFNISSFRLKFKVGDGKHLVFRNQAAASSLSASSVEGVRF 120

Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKLRGIAG                                  GMHAGLPKYVPVNLKDIE
Sbjct: 181 PKLRGIAG----------------------------------GMHAGLPKYVPVNLKDIE 240

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
           EAGFQEGEEVSLETLKE+GLINPSGRERKLPLKIL DGEL+VKLNIKAR+FSSAAK+KLE
Sbjct: 241 EAGFQEGEEVSLETLKEKGLINPSGRERKLPLKILGDGELSVKLNIKARSFSSAAKQKLE 268

Query: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA 347
           A GCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAA +QASA
Sbjct: 301 AVGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAEDQASA 268

[Close]

BLAST of Lsi04G002470 vs. NCBI nr
Match: XP_038891383.1 (50S ribosomal protein L15, chloroplastic [Benincasa hispida])

HSP 1 Score: 437.6 bits (1124), Expect = 1.0e-118
Identity = 254/341 (74.49%), Postives = 258/341 (75.66%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MAALLSLSSTSLTRTATALPYPTTSFK                                 
Sbjct: 1   MAALLSLSSTSLTRTATALPYPTTSFK--------------------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRF 120
                      GNVKILN KQL+ISSL LKFKVGDGKHLVVRNQA ASSLSAS VE+VRF
Sbjct: 61  -----------GNVKILNPKQLTISSLRLKFKVGDGKHLVVRNQAPASSLSASPVESVRF 120

Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKLRGIAG                                  GMHAGLPKYVPVNLKDIE
Sbjct: 181 PKLRGIAG----------------------------------GMHAGLPKYVPVNLKDIE 240

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
           EAGFQEGEEVSLETLKE+GLINPSGRERKLPLKILADGEL+VKLNIKARAFSSAAKEKLE
Sbjct: 241 EAGFQEGEEVSLETLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLE 263

Query: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAA 342
           AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAA A
Sbjct: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAATA 263

[Close]

BLAST of Lsi04G002470 vs. NCBI nr
Match: XP_008446604.1 (PREDICTED: 50S ribosomal protein L15, chloroplastic [Cucumis melo] >XP_008446605.1 PREDICTED: 50S ribosomal protein L15, chloroplastic [Cucumis melo])

HSP 1 Score: 430.3 bits (1105), Expect = 1.6e-116
Identity = 252/346 (72.83%), Postives = 257/346 (74.28%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MAAL SLSSTSLTRTATALPYPTTSFK                                 
Sbjct: 1   MAALFSLSSTSLTRTATALPYPTTSFK--------------------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRF 120
                      GNV ILNSK LSISS  LKFK  DGKHLVVRNQAAASSL AS  + VRF
Sbjct: 61  -----------GNVSILNSKHLSISSPKLKFKAVDGKHLVVRNQAAASSLYASPADNVRF 120

Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           RLDNLGPQPGSRK+GKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 121 RLDNLGPQPGSRKRGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKLRGIAG                                  GMHAGLPKYVPVNLKDIE
Sbjct: 181 PKLRGIAG----------------------------------GMHAGLPKYVPVNLKDIE 240

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
           EAGFQEGEEVSLETLKE+GLINPSGRERKLPLKILADGEL+VKLNIKARAFSSAAKEKLE
Sbjct: 241 EAGFQEGEEVSLETLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLE 268

Query: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA 347
           AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQ+SA
Sbjct: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQSSA 268

[Close]

BLAST of Lsi04G002470 vs. NCBI nr
Match: XP_004135093.1 (50S ribosomal protein L15, chloroplastic [Cucumis sativus] >KGN52087.1 hypothetical protein Csa_008981 [Cucumis sativus])

HSP 1 Score: 429.5 bits (1103), Expect = 2.8e-116
Identity = 253/346 (73.12%), Postives = 257/346 (74.28%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MAAL SLSS SLTRTATALPYPTTSFK                                 
Sbjct: 1   MAALFSLSSPSLTRTATALPYPTTSFK--------------------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRF 120
                      GNV ILNSK LSISSL LK K  DGKHLVVRNQAAASSLSAS  E VRF
Sbjct: 61  -----------GNVNILNSKHLSISSLRLKSKSVDGKHLVVRNQAAASSLSASPAENVRF 120

Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           RLDNLGPQPGSRK+GKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 121 RLDNLGPQPGSRKRGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKLRGIAG                                  GMHAGLPKYVPVNLKDIE
Sbjct: 181 PKLRGIAG----------------------------------GMHAGLPKYVPVNLKDIE 240

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
           EAGFQEGEEVSLE+LKE+GLINPSGRERKLPLKILADGEL+VKLNIKARAFSSAAKEKLE
Sbjct: 241 EAGFQEGEEVSLESLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLE 268

Query: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA 347
           AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
Sbjct: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA 268

[Close]

BLAST of Lsi04G002470 vs. NCBI nr
Match: XP_022984826.1 (50S ribosomal protein L15, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 423.3 bits (1087), Expect = 2.0e-114
Identity = 248/344 (72.09%), Postives = 257/344 (74.71%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MAALLSLSS+SLTRTA ALP+PTTSFK                                 
Sbjct: 1   MAALLSLSSSSLTRTAIALPHPTTSFK--------------------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRF 120
                      GNVKILNSKQ S SSL LKFKVGDGK LVVR+QAAASSLSAS VE+VRF
Sbjct: 61  -----------GNVKILNSKQFSFSSLKLKFKVGDGKPLVVRSQAAASSLSASPVESVRF 120

Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           RLDNLGPQ GSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 121 RLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKLRGIAG                                  GMHAGLPKYVPVNLKDIE
Sbjct: 181 PKLRGIAG----------------------------------GMHAGLPKYVPVNLKDIE 240

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
            AGFQEGEEVSLE+LKE+GLINPSGRERKLPLKILADGEL+VKLNIKARAFSSAAKEKLE
Sbjct: 241 AAGFQEGEEVSLESLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLE 266

Query: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQA 345
           A GCSLTVLPGRKKWVKPSVAKNLARA+EYFAKK+AAAAAAEQA
Sbjct: 301 AVGCSLTVLPGRKKWVKPSVAKNLARADEYFAKKRAAAAAAEQA 266

[Close]

BLAST of Lsi04G002470 vs. NCBI nr
Match: XP_022956924.1 (50S ribosomal protein L15, chloroplastic-like [Cucurbita moschata] >KAG6601285.1 50S ribosomal protein L15, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032073.1 50S ribosomal protein L15, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 419.5 bits (1077), Expect = 2.9e-113
Identity = 246/344 (71.51%), Postives = 255/344 (74.13%), Query Frame = 0


Query: 1   MAALLSLSSTSLTRTATALPYPTTSFKVFHYSFPSSFFTFLISNSTRYLSSIFCFLDAFI 60
           MAALLSLSS+SLTRTA ALP+PTT FK                                 
Sbjct: 1   MAALLSLSSSSLTRTAIALPHPTTPFK--------------------------------- 60

Query: 61  IYETLIHLHFQGNVKILNSKQLSISSLSLKFKVGDGKHLVVRNQAAASSLSASSVETVRF 120
                      GNVKILNSKQ S S L LKFKVGDGK LVVR+QAAASSLSAS VE+VRF
Sbjct: 61  -----------GNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQAAASSLSASPVESVRF 120

Query: 121 RLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180
           RLDNLGPQ GSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 121 RLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 180

Query: 181 PKLRGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIE 240
           PKLRGIAG                                  GMHAGLPKYVPVNLKDIE
Sbjct: 181 PKLRGIAG----------------------------------GMHAGLPKYVPVNLKDIE 240

Query: 241 EAGFQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLE 300
            AGFQEGEEVSLE+LKE+GLINPSGRERKLPLKILADGEL+VKLNIKARAFSSAAKEKLE
Sbjct: 241 AAGFQEGEEVSLESLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLE 266

Query: 301 AAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQA 345
           A GCSLTVLPGRKKWVKPSVAKNLARA+EYFAKK+AAAAAAEQA
Sbjct: 301 AVGCSLTVLPGRKKWVKPSVAKNLARADEYFAKKRAAAAAAEQA 266

[Close]

BLAST of Lsi04G002470 vs. TAIR 10
Match: AT3G25920.1 (ribosomal protein L15 )

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-83
Identity = 176/278 (63.31%), Postives = 201/278 (72.30%), Query Frame = 0


Query: 70  FQGNVKILNSKQLSISSLSLKFKVGD------GKHLVVRNQAAASSLSASSVETVRFRLD 129
           F+GNV +L +    I SL L   +         + LVV +Q AA+S +  + E  RFRLD
Sbjct: 27  FKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTAATSSAVVAPE--RFRLD 86

Query: 130 NLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKL 189
           NLGPQPGSRKK KRKGRGISAGQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKL
Sbjct: 87  NLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKL 146

Query: 190 RGIAGEHSEMMYRVWHLFFLRSPLYELVIFMLNNCFCFQGMHAGLPKYVPVNLKDIEEAG 249
           RGIAG                                  GM +GLPKY+PVN+KDIE AG
Sbjct: 147 RGIAG----------------------------------GMRSGLPKYLPVNIKDIETAG 206

Query: 250 FQEGEEVSLETLKERGLINPSGRERKLPLKILADGELNVKLNIKARAFSSAAKEKLEAAG 309
           FQEG+EVSLETLK++GLINPSGRERKLPLKIL  GEL++KL  KARAFS+ AKEKLEA+G
Sbjct: 207 FQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASG 266

Query: 310 CSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAA 342
           C+LTVLPGRKKWVKPSVAKN ARA+EYFAKK+AAAA A
Sbjct: 267 CTLTVLPGRKKWVKPSVAKNQARADEYFAKKRAAAAEA 268

[Close]

BLAST of Lsi04G002470 vs. TAIR 10
Match: AT5G64670.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.8e-05
Identity = 46/128 (35.94%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 60  IIYETLIHLHFQGNVK---ILNSKQLSI--SSLSLKFKVGDGKHLVVRNQAAASSLSASS 119
           II  +LI+  F    K   I++S  L    S +S +      + L  +   A S LS + 
Sbjct: 9   IISTSLINSSFHQTAKPRFIISSPLLQCRPSPISTQIPTSTSRALSFQGIRAYSLLSLND 68

Query: 120 VETVRFRLDNLGPQPGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQM 179
           +       DN+      RK   RKGRGI +G+G + G G +GQK+R    ++ GFEGGQ 
Sbjct: 69  LR------DNV-----PRKLKTRKGRGIGSGKGKTAGRGHKGQKARG--TMKFGFEGGQT 123

Query: 180 PLYRRIPK 183
           PL RR+PK
Sbjct: 129 PLRRRLPK 123

The following BLAST results are available for this feature:

BLAST of Lsi04G002470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25873	1.6e-82	63.31	50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P31165	2.1e-82	64.39	50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=...	[more]
P22798	1.1e-78	53.89	50S ribosomal protein L15, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL15 P...	[more]
P31160	1.6e-29	43.92	50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-80...	[more]
Q5N0U8	1.6e-29	43.92	50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S...	[more]

BLAST of Lsi04G002470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BFG1	7.9e-117	72.83	50S ribosomal protein L15, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489288...	[more]
A0A0A0KUI5	1.3e-116	73.12	Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A6J1J6D0	9.6e-115	72.09	50S ribosomal protein L15, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1H0G5	1.4e-113	71.51	50S ribosomal protein L15, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1DAS8	4.0e-113	70.52	50S ribosomal protein L15, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Lsi04G002470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891383.1	1.0e-118	74.49	50S ribosomal protein L15, chloroplastic [Benincasa hispida]	[more]
XP_008446604.1	1.6e-116	72.83	PREDICTED: 50S ribosomal protein L15, chloroplastic [Cucumis melo] >XP_008446605...	[more]
XP_004135093.1	2.8e-116	73.12	50S ribosomal protein L15, chloroplastic [Cucumis sativus] >KGN52087.1 hypotheti...	[more]
XP_022984826.1	2.0e-114	72.09	50S ribosomal protein L15, chloroplastic-like [Cucurbita maxima]	[more]
XP_022956924.1	2.9e-113	71.51	50S ribosomal protein L15, chloroplastic-like [Cucurbita moschata] >KAG6601285.1...	[more]

BLAST of Lsi04G002470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25920.1	1.1e-83	63.31	ribosomal protein L15	[more]
AT5G64670.1	2.8e-05	35.94	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 231..308 e-value: 1.1E-19 score: 72.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..148
None	No IPR available	PANTHER	PTHR12934:SF13	BNAA06G33230D PROTEIN	coord: 222..341 coord: 68..189
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 146..307 e-value: 1.1E-29 score: 103.7
IPR005749	Ribosomal protein L15, bacterial-type	PANTHER	PTHR12934	50S RIBOSOMAL PROTEIN L15	coord: 222..341
IPR005749	Ribosomal protein L15, bacterial-type	PANTHER	PTHR12934	50S RIBOSOMAL PROTEIN L15	coord: 68..189
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 273..303
IPR030878	Ribosomal protein L15	HAMAP	MF_01341	Ribosomal_L15	coord: 122..309 score: 18.542131
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 133..309

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G002470.1	Lsi04G002470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome