Lsi04G001460 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G001460
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionR3H domain-containing protein 2-like
Locationchr04: 1672781 .. 1673761 (-)
RNA-Seq ExpressionLsi04G001460
SyntenyLsi04G001460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACTTTAGAGTTCTCCTCCCTTCGTCTCCCCATGGAGGGCTCTGTGGTTGAGGATCTCGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGAGGCCATGAGCCGATTGATGCTCCCCTCTTCATCTCCTAACAAGAATTCCAAATCCTTGGACCACTCTGTTGCCGATGCTGCTCCTGCTTATCATTTTTCATCCGCTTCCTTTCCCTCTCTTTCTGCTTCGGCTTCTTCTACTCTCGATAGGGTTTCCGAGGATGCTATCAATCAGGTTGATCAGTTCCTTCGTGAGGCTTTGCATAACCCTCGGGAGCGTCTATCAAGTAAGTTGTTTATTTAGCTTTCCTGTATTATGGATGGTGTGATTGGTTTCAGGAATTCTCGAATGTCACGTTCGGTACGAGGGAGGAGATAGTAAAAAGTTGCTTGCTACGGCCTTCTCCAAGCTGGGTTGGAAGTGGCCGGTCGCTTCCCGGATTTCTATAGGCTTTTAGTATGGTCTAGTTTTTCAAATGCCTCCTTTGCGACTTTGTTTGCACTCTATTTTTCAAGACAAGATATACTATTATTGATAAACTGGAATTCACAATGATAACGCCATACTAAGAAAAGGCGCTCCAATTTGGATCAATGGTATTATAAGTATTGCTACCAAAAACCATGTAGTGGATTTCAAGAAGCCGTGTGATATTTGTTTGGAACAATATGGTGAAACTAAACGATATGATATGATTTAAAGCAATTCCAAGACAAAGGTTGGGAATGGTGGTAAGACAATCTCTGGAAGACGTGTAGATGGGTGGAAATTCCGTGGTTGACTGTTTTCCTAGTCTGTATAGGGCGGTGGATTTGAAGAATTAATTGTTAAAGGAGTTGTAGGACTTAAATGCTGGGTTGGAAAATGAATGCAAGACGAAGTTTAGAAGACGGAGAAGAAAGGGGATTTTTGTTGCTATTGGATGTTCTGAATACTCAAAGAGC

mRNA sequence

GACTTTAGAGTTCTCCTCCCTTCGTCTCCCCATGGAGGGCTCTGTGGTTGAGGATCTCGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGAGGCCATGAGCCGATTGATGCTCCCCTCTTCATCTCCTAACAAGAATTCCAAATCCTTGGACCACTCTGTTGCCGATGCTGCTCCTGCTTATCATTTTTCATCCGCTTCCTTTCCCTCTCTTTCTGCTTCGGCTTCTTCTACTCTCGATAGGGTTTCCGAGGATGCTATCAATCAGGTTGATCAGTTCCTTCGTGAGGCTTTGCATAACCCTCGGGAGCGTCTATCAAGAATTCTCGAATGTCACGTTCGGTACGAGGGAGGAGATAGTAAAAAGTTGCTTGCTACGGCCTTCTCCAAGCTGGGTTGGAAGTGGCCGGACTTAAATGCTGGGTTGGAAAATGAATGCAAGACGAAGTTTAGAAGACGGAGAAGAAAGGGGATTTTTGTTGCTATTGGATGTTCTGAATACTCAAAGAGC

Coding sequence (CDS)

ATGGAGGGCTCTGTGGTTGAGGATCTCGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGAGGCCATGAGCCGATTGATGCTCCCCTCTTCATCTCCTAACAAGAATTCCAAATCCTTGGACCACTCTGTTGCCGATGCTGCTCCTGCTTATCATTTTTCATCCGCTTCCTTTCCCTCTCTTTCTGCTTCGGCTTCTTCTACTCTCGATAGGGTTTCCGAGGATGCTATCAATCAGGTTGATCAGTTCCTTCGTGAGGCTTTGCATAACCCTCGGGAGCGTCTATCAAGAATTCTCGAATGTCACGTTCGGTACGAGGGAGGAGATAGTAAAAAGTTGCTTGCTACGGCCTTCTCCAAGCTGGGTTGGAAGTGGCCGGACTTAAATGCTGGGTTGGAAAATGAATGCAAGACGAAGTTTAGAAGACGGAGAAGAAAGGGGATTTTTGTTGCTATTGGATGTTCTGAATACTCAAAGAGC

Protein sequence

MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLSRILECHVRYEGGDSKKLLATAFSKLGWKWPDLNAGLENECKTKFRRRRRKGIFVAIGCSEYSKS
Homology
[Close]
BLAST of Lsi04G001460 vs. ExPASy TrEMBL
Match: A0A1S3BGI0 (R3H domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489394 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.5e-38
Identity = 92/97 (94.85%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 1  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFP 60
          MEGS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLD  VADAAPAYHFSSASFP
Sbjct: 1  MEGSAVEDLGAPESWEVADLDEAMSRLMLPSSSPKKNSKSLD--VADAAPAYHFSSASFP 60

Query: 61 SLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS 98
          SLSASASS LDRVSEDAINQVDQFLREALHNPRERLS
Sbjct: 61 SLSASASSALDRVSEDAINQVDQFLREALHNPRERLS 95

[Close]
BLAST of Lsi04G001460 vs. ExPASy TrEMBL
Match: A0A5D3CFX4 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002020 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.5e-38
Identity = 92/97 (94.85%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 1  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFP 60
          MEGS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLD  VADAAPAYHFSSASFP
Sbjct: 1  MEGSAVEDLGAPESWEVADLDEAMSRLMLPSSSPKKNSKSLD--VADAAPAYHFSSASFP 60

Query: 61 SLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS 98
          SLSASASS LDRVSEDAINQVDQFLREALHNPRERLS
Sbjct: 61 SLSASASSALDRVSEDAINQVDQFLREALHNPRERLS 95

[Close]
BLAST of Lsi04G001460 vs. ExPASy TrEMBL
Match: A0A6J1HWM6 (R3H domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467527 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 85/97 (87.63%), Postives = 86/97 (88.66%), Query Frame = 0 

Query: 1  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFP 60
          M+GS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLDHSVADAA   H SSASFP
Sbjct: 1  MDGSAVEDLGAPESWEVADLDEAMSRLMLPSSSPLKNSKSLDHSVADAALGSHSSSASFP 60

Query: 61 SLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS 98
          S SAS SST DR SED INQVDQFLREALHNPRERLS
Sbjct: 61 SPSASTSSTPDRASEDVINQVDQFLREALHNPRERLS 97

[Close]
BLAST of Lsi04G001460 vs. ExPASy TrEMBL
Match: A0A6J1G0Z8 (R3H domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111449673 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 85/97 (87.63%), Postives = 86/97 (88.66%), Query Frame = 0 

Query: 1  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFP 60
          M+GS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLDHSVADAA   H SSASFP
Sbjct: 1  MDGSAVEDLGAPESWEVADLDEAMSRLMLPSSSPLKNSKSLDHSVADAALGSHSSSASFP 60

Query: 61 SLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS 98
          S SAS SST DR SED INQVDQFLREALHNPRERLS
Sbjct: 61 SPSASTSSTPDRASEDVINQVDQFLREALHNPRERLS 97

[Close]
BLAST of Lsi04G001460 vs. ExPASy TrEMBL
Match: A0A6J1GZL4 (R3H domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111458304 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.0e-34
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = 0 

Query: 1  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFP 60
          MEGS VEDLGAPESWEVA+LDEAMSRLMLPSSSP KNSKSLD+S  DAAPA HFSSASFP
Sbjct: 1  MEGSAVEDLGAPESWEVANLDEAMSRLMLPSSSPTKNSKSLDNSFDDAAPASHFSSASFP 60

Query: 61 SLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS 98
          SL +SASST+DRV ED +NQVDQFL EAL+NPRERLS
Sbjct: 61 SLPSSASSTIDRVPEDVVNQVDQFLLEALNNPRERLS 97

[Close]
BLAST of Lsi04G001460 vs. NCBI nr
Match: XP_038892280.1 (uncharacterized protein LOC120081466 [Benincasa hispida])

HSP 1 Score: 178.3 bits (451), Expect = 5.2e-41
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 1  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFP 60
          MEGS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLDHSVADAAPAYHFSSASFP
Sbjct: 1  MEGSAVEDLGAPESWEVADLDEAMSRLMLPSSSPKKNSKSLDHSVADAAPAYHFSSASFP 60

Query: 61 SLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS 98
          SLSAS SSTLDRVSEDAINQVDQFLREALHNPRERLS
Sbjct: 61 SLSASPSSTLDRVSEDAINQVDQFLREALHNPRERLS 97

[Close]
BLAST of Lsi04G001460 vs. NCBI nr
Match: XP_008446764.1 (PREDICTED: R3H domain-containing protein 2-like [Cucumis melo] >XP_008446765.1 PREDICTED: R3H domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-38
Identity = 92/97 (94.85%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 1  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFP 60
          MEGS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLD  VADAAPAYHFSSASFP
Sbjct: 1  MEGSAVEDLGAPESWEVADLDEAMSRLMLPSSSPKKNSKSLD--VADAAPAYHFSSASFP 60

Query: 61 SLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS 98
          SLSASASS LDRVSEDAINQVDQFLREALHNPRERLS
Sbjct: 61 SLSASASSALDRVSEDAINQVDQFLREALHNPRERLS 95

[Close]
BLAST of Lsi04G001460 vs. NCBI nr
Match: KAA0034658.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-38
Identity = 92/97 (94.85%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 1  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFP 60
          MEGS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLD  VADAAPAYHFSSASFP
Sbjct: 1  MEGSAVEDLGAPESWEVADLDEAMSRLMLPSSSPKKNSKSLD--VADAAPAYHFSSASFP 60

Query: 61 SLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS 98
          SLSASASS LDRVSEDAINQVDQFLREALHNPRERLS
Sbjct: 61 SLSASASSALDRVSEDAINQVDQFLREALHNPRERLS 95

[Close]
BLAST of Lsi04G001460 vs. NCBI nr
Match: KAG7032009.1 (R3H domain-containing protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 5.6e-35
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 0 

Query: 1  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFP 60
          MEGS VEDLGAPESWEVA+LDEAMSRLMLPSSSP KNSKSLD+S+ DAAPA HFSSASFP
Sbjct: 1  MEGSAVEDLGAPESWEVANLDEAMSRLMLPSSSPTKNSKSLDNSLDDAAPASHFSSASFP 60

Query: 61 SLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS 98
          SL +SASST+DRV ED +NQVDQFL EALHNPRERLS
Sbjct: 61 SLPSSASSTIDRVPEDVVNQVDQFLLEALHNPRERLS 97

[Close]
BLAST of Lsi04G001460 vs. NCBI nr
Match: KAG6601215.1 (R3H domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.5 bits (397), Expect = 9.5e-35
Identity = 83/97 (85.57%), Postives = 88/97 (90.72%), Query Frame = 0 

Query: 1  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFP 60
          MEGS VEDLGAPESWEVA+LDEAMSRLMLPSSSP KNSKSLD+S  DAAPA HFSSASFP
Sbjct: 1  MEGSAVEDLGAPESWEVANLDEAMSRLMLPSSSPTKNSKSLDNSFDDAAPASHFSSASFP 60

Query: 61 SLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS 98
          SL +SASST+DRV ED +NQVDQFL EALHNPRERLS
Sbjct: 61 SLPSSASSTIDRVPEDVVNQVDQFLLEALHNPRERLS 97

The following BLAST results are available for this feature:
BLAST of Lsi04G001460 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G001460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BGI01.5e-3894.85R3H domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489394 PE=... [more]
A0A5D3CFX41.5e-3894.85R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A6J1HWM61.3e-3487.63R3H domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467527... [more]
A0A6J1G0Z81.3e-3487.63R3H domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114496... [more]
A0A6J1GZL43.0e-3484.54R3H domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114583... [more]
BLAST of Lsi04G001460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038892280.15.2e-4196.91uncharacterized protein LOC120081466 [Benincasa hispida][more]
XP_008446764.13.1e-3894.85PREDICTED: R3H domain-containing protein 2-like [Cucumis melo] >XP_008446765.1 P... [more]
KAA0034658.13.1e-3894.85R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H ... [more]
KAG7032009.15.6e-3585.57R3H domain-containing protein 2 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6601215.19.5e-3585.57R3H domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Lsi04G001460 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G001460.1Lsi04G001460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding