Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACTCCAAACGCAATCCCTGCCTTTTGTCCACCGCTCAGTCCTTTTGAATCTCCACCACCCTTTTCATTCAATGCTTTATTAGTTGGCGGTGCCGGTGGCGGAGATGAACCCACATCAGGCGGTGGCGCCGGTGGTGAGATAATGGTGCCACTGGGTGGCGGTGGTGGAGATGAGTTGGTTGTATTGGATGGTGGTGGTGAAGGTGGACTGTCAGTTGTGTTGGAGGGCGGCGGTGGTGGCGGCGGCGGACCATTAGTTGTGTTGGATGGCGGTGGAGGTGGCGGACCGTCAGTTGCGTTGGATGGCGGCGGAGGTGGTGGACCGTCAGTTGCGTTGGTTGGCGGCGGAGGTGGTGGACCGTCAGTTGCGTTGGTTGGCGGCGGCGGGGGTGGACCGTCAGTTGCGTTGGATGGTGGCGGCGGTGGTGGACTGTCAGTTGCGTTGGATGATGGCGGCGGCAGTGGTGGACTGTCAGTTGCGTTGGATGGTGGCGGCGGCGGTGGTGGACTGTCAGTTGCGTTGGATGGCGATGGAGGTGGTGGACTGTCAGTTGCGTTGGATGGCGGTGGAGGAGGAGATGCATCTTGA
mRNA sequence
ATGATCACTCCAAACGCAATCCCTGCCTTTTGTCCACCGCTCAGTCCTTTTGAATCTCCACCACCCTTTTCATTCAATGCTTTATTAGTTGGCGGTGCCGGTGGCGGAGATGAACCCACATCAGGCGGTGGCGCCGGTGGTGAGATAATGGTGCCACTGGGTGGCGGTGGTGGAGATGAGTTGGTTGTATTGGATGGTGGTGGTGAAGGTGGACTGTCAGTTGTGTTGGAGGGCGGCGGTGGTGGCGGCGGCGGACCATTAGTTGTGTTGGATGGCGGTGGAGGTGGCGGACCGTCAGTTGCGTTGGATGGCGGCGGAGGTGGTGGACCGTCAGTTGCGTTGGTTGGCGGCGGAGGTGGTGGACCGTCAGTTGCGTTGGTTGGCGGCGGCGGGGGTGGACCGTCAGTTGCGTTGGATGGTGGCGGCGGTGGTGGACTGTCAGTTGCGTTGGATGATGGCGGCGGCAGTGGTGGACTGTCAGTTGCGTTGGATGGTGGCGGCGGCGGTGGTGGACTGTCAGTTGCGTTGGATGGCGATGGAGGTGGTGGACTGTCAGTTGCGTTGGATGGCGGTGGAGGAGGAGATGCATCTTGA
Coding sequence (CDS)
ATGATCACTCCAAACGCAATCCCTGCCTTTTGTCCACCGCTCAGTCCTTTTGAATCTCCACCACCCTTTTCATTCAATGCTTTATTAGTTGGCGGTGCCGGTGGCGGAGATGAACCCACATCAGGCGGTGGCGCCGGTGGTGAGATAATGGTGCCACTGGGTGGCGGTGGTGGAGATGAGTTGGTTGTATTGGATGGTGGTGGTGAAGGTGGACTGTCAGTTGTGTTGGAGGGCGGCGGTGGTGGCGGCGGCGGACCATTAGTTGTGTTGGATGGCGGTGGAGGTGGCGGACCGTCAGTTGCGTTGGATGGCGGCGGAGGTGGTGGACCGTCAGTTGCGTTGGTTGGCGGCGGAGGTGGTGGACCGTCAGTTGCGTTGGTTGGCGGCGGCGGGGGTGGACCGTCAGTTGCGTTGGATGGTGGCGGCGGTGGTGGACTGTCAGTTGCGTTGGATGATGGCGGCGGCAGTGGTGGACTGTCAGTTGCGTTGGATGGTGGCGGCGGCGGTGGTGGACTGTCAGTTGCGTTGGATGGCGATGGAGGTGGTGGACTGTCAGTTGCGTTGGATGGCGGTGGAGGAGGAGATGCATCTTGA
Protein sequence
MITPNAIPAFCPPLSPFESPPPFSFNALLVGGAGGGDEPTSGGGAGGEIMVPLGGGGGDELVVLDGGGEGGLSVVLEGGGGGGGGPLVVLDGGGGGGPSVALDGGGGGGPSVALVGGGGGGPSVALVGGGGGGPSVALDGGGGGGLSVALDDGGGSGGLSVALDGGGGGGGLSVALDGDGGGGLSVALDGGGGGDAS
Homology
BLAST of Lsi04G000650 vs. ExPASy TrEMBL
Match:
A0A6J1GYP3 (loricrin-like OS=Cucurbita moschata OX=3662 GN=LOC111458710 PE=4 SV=1)
HSP 1 Score: 136.0 bits (341), Expect = 1.7e-28
Identity = 100/145 (68.97%), Postives = 106/145 (73.10%), Query Frame = 0
Query: 1 MITPNAIPAFCPPLSPFESPPPFSFNALLVGGAGGGDEPTSGGGAGGEIMVPLGGGGGDE 60
+ITPNA+PAFCPPLSPFES PPFSFNAL V GAGGGDE TSG GAGGE++V GGGG
Sbjct: 14 IITPNAMPAFCPPLSPFESAPPFSFNALFVPGAGGGDELTSGEGAGGEMLV--SGGGGGL 73
Query: 61 LVVLDGGGEGGLSVVLEGGGGGGGGPLVVLDGGGGGGPSVALDGGGGGGPSVALVGGGGG 120
VV DGGG GGL VVL+ GGGGGG VVLDG GGGG V LDG GGGG V L GGG
Sbjct: 74 SVVFDGGG-GGLPVVLD--GGGGGGLPVVLDGAGGGGLPVVLDGAGGGGLPVVLDGGG-- 133
Query: 121 GPSVALVGGGGGGPSVALDGGGGGG 146
GGGGG PSV +GGGGGG
Sbjct: 134 -------GGGGGAPSVVFNGGGGGG 144
BLAST of Lsi04G000650 vs. ExPASy TrEMBL
Match:
A0A1S4DW63 (loricrin-like OS=Cucumis melo OX=3656 GN=LOC103489470 PE=4 SV=1)
HSP 1 Score: 133.7 bits (335), Expect = 8.7e-28
Identity = 107/153 (69.93%), Postives = 113/153 (73.86%), Query Frame = 0
Query: 54 GGGGGDELVVLDGGGEGGLSVVLEGGGGGGGGPLVVLDGGGGGGPSVALDGGGGGGPSVA 113
GGGGGDELVVLDGG GG+SVVL+GGGGG VV DGGGGGG SV DGGGGGG SV
Sbjct: 7 GGGGGDELVVLDGG--GGVSVVLDGGGGGVS---VVFDGGGGGGVSVVFDGGGGGGVSVV 66
Query: 114 LVGGGGGGPSVALVGGGGGGPSVALDGGGGGGLSVALDDG---------GGSGGLSVALD 173
GGGGGG SV GGGGGG V LDGGGGGG+SV D G GG GG+SV LD
Sbjct: 67 FDGGGGGGVSVVFDGGGGGGVLVVLDGGGGGGVSVVFDGGGGGVSVVFDGGGGGVSVMLD 126
Query: 174 GGGGGGGLSVALDGDGGGGLSVALDGGGGGDAS 198
GGGGGG+SV LDG GGGG+SV LDGGGGGDAS
Sbjct: 127 -GGGGGGVSVVLDGGGGGGVSVGLDGGGGGDAS 153
BLAST of Lsi04G000650 vs. ExPASy TrEMBL
Match:
A0A6J1JS83 (glycine-rich cell wall structural protein 1.0-like OS=Cucurbita maxima OX=3661 GN=LOC111487352 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 92/146 (63.01%), Postives = 97/146 (66.44%), Query Frame = 0
Query: 1 MITPNAIPAFCPPLSPFESPPPFSFNALLVGGAGGGDEPTSGGGAGGEIMVPLGGGGGDE 60
+ITP +PAFCPPLSPFES PPFSFNA V GAGGGDE TSG GA
Sbjct: 12 IITPKPMPAFCPPLSPFESAPPFSFNASFVVGAGGGDEFTSGEGA--------------- 71
Query: 61 LVVLDGGGEGGLSVVLEGGGGGGGGPLVVLDGGGGGGPSVALDGGGGGGPSVALVGGGGG 120
GG GG+SVV +GGGGGGG P VLDGGGGGG V LDGGGGGG V L G GGG
Sbjct: 72 ------GGGGGVSVVFDGGGGGGGLP-AVLDGGGGGGLPVVLDGGGGGGLPVVLDGAGGG 131
Query: 121 GPSVALVGGGGGG-PSVALDGGGGGG 146
G V L GGGGGG PSV +GGGGGG
Sbjct: 132 GLPVVLDGGGGGGAPSVVFNGGGGGG 135
BLAST of Lsi04G000650 vs. ExPASy TrEMBL
Match:
A0A6I8T397 (Cysteine-rich venom protein, putative OS=Aedes aegypti OX=7159 GN=110675135 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 2.3e-12
Identity = 87/165 (52.73%), Postives = 98/165 (59.39%), Query Frame = 0
Query: 31 GGAGGGDEPTSGGGAGGEIMVPLGGGGGDELVVLDGGGEGGLSVVLEGGGGGGGGPLVV- 90
GG GG + GGG GG + GGGGG +V GGG GG+ V +GGGGGGGG +VV
Sbjct: 65 GGGGGVVVQSQGGGGGGVVSQTHGGGGGGVVVQSQGGGGGGVVVQSQGGGGGGGGGVVVQ 124
Query: 91 LDGGGGGGPSVALDGGGGGGPSVALVGGGGGGPSVALVGGGGGGPSVALDGGGGGGLSVA 150
GGGGGG V GGGGGG V GGGG G + GGGGGG V GGGGGG V
Sbjct: 125 SQGGGGGGVVVQSQGGGGGGVVVQSHGGGGEGVVMQSHGGGGGGVVVQSHGGGGGG--VV 184
Query: 151 LDDGGGSGGLSVALDGGGGGGGLSVALDGDGGGGLSVALDGGGGG 195
+ GG GG V+ GGGGGG+ V G GGGG+ V GGGGG
Sbjct: 185 VQSHGGGGGRVVSQSHGGGGGGVVVQSHGGGGGGVIVQSHGGGGG 227
BLAST of Lsi04G000650 vs. ExPASy TrEMBL
Match:
A0A2B7ZNF9 (Uncharacterized protein (Fragment) OS=Emmonsia crescens OX=73230 GN=GX50_02507 PE=4 SV=1)
HSP 1 Score: 77.4 bits (189), Expect = 7.4e-11
Identity = 91/172 (52.91%), Postives = 100/172 (58.14%), Query Frame = 0
Query: 29 LVGGAGGGDEPTSG--GGAGGEIMVPLGGGGGDELVVLDGGGEGGLSVVLEGGGGGGGGP 88
+V GAGGG G GG GG +++ GGGGG VVL GG GG GGGGGGGG
Sbjct: 85 VVLGAGGGGTQVDGYEGGGGGSVVLGAGGGGGGGSVVLGAGGGGG-----GGGGGGGGGT 144
Query: 89 LVVLDGGGGGGPSVALDGGGGGGPSVALVGGGGGGPSVALVGGGGGGPSVALDGGGGGGL 148
V+ GGGGGG + G GGGG V GGGGGG SV L GGGG + GGGGGG
Sbjct: 145 EVLGAGGGGGGGGTEVLGAGGGGTQVLGAGGGGGG-SVVLGAGGGGTQVLGAGGGGGGGG 204
Query: 149 SVALDDGGGSGGLSVALD----GGGGGGGLSVALDGDGGGGLSVALDGGGGG 195
+ L GGG GG+SV L GGGGGGG V G GGGG V GGGGG
Sbjct: 205 TEVLGAGGGGGGVSVVLGAGGAGGGGGGGTEVL--GAGGGGTQVLGAGGGGG 248
BLAST of Lsi04G000650 vs. NCBI nr
Match:
XP_031741791.1 (glycine-rich protein 23-like [Cucumis sativus])
HSP 1 Score: 223.0 bits (567), Expect = 2.2e-54
Identity = 163/217 (75.12%), Postives = 166/217 (76.50%), Query Frame = 0
Query: 1 MITPNAIPAFCPPLSPFESPPPFSFNALLVGGAGGGDEPTSGGGAGGEIMVPLGGGGGDE 60
MITPNAIPAFCPPL+PFE PPPFSFNA L G GGGDEP GGGAGG++ V LGGGGG E
Sbjct: 14 MITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGGKLTVELGGGGG-E 73
Query: 61 LVVLDGG----------GEGGLSVVLEGG----------GGGGGGPLVVLDGGGGGGPSV 120
LVVLDGG G GG SVVL GG GGGGGG V LDGGGGGG SV
Sbjct: 74 LVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGASVALDGGGGGGASVALDGGGGGGASV 133
Query: 121 ALDGGGGGGPSVALVGGGGGGPSVALVGGGGGGPSVALDGGGGGGLSVALDDGGGSGGLS 180
ALDGGGGGG SVAL GGGGGG SVAL GGGGGG SVALDGGGGGG SVAL DGGG GG S
Sbjct: 134 ALDGGGGGGASVALDGGGGGGVSVALDGGGGGGASVALDGGGGGGASVAL-DGGGGGGAS 193
Query: 181 VALDGGGGGGGLSVALDGDGGGGLSVALDGGGGGDAS 198
VALDGGGGGG SVALDG GGGG SVALDGGGGG AS
Sbjct: 194 VALDGGGGGGA-SVALDGGGGGGASVALDGGGGGGAS 227
BLAST of Lsi04G000650 vs. NCBI nr
Match:
KAG6601160.1 (hypothetical protein SDJN03_06393, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 137.9 bits (346), Expect = 9.5e-29
Identity = 107/165 (64.85%), Postives = 112/165 (67.88%), Query Frame = 0
Query: 7 IPAFCPPLSPFESPPPFSFNALLVGGAGGGDEPTSGGGAGGEIMVPLGGGGGDELVVLDG 66
+PAFCPPLSPFES PPFSFNAL V GAGGGDE TSG GAGGE++V
Sbjct: 1 MPAFCPPLSPFESAPPFSFNALFVPGAGGGDELTSGEGAGGEMLV--------------S 60
Query: 67 GGEGGLSVVLEGGGGGGGGPLVVLDGGGGGGPSVALDGGGGGGPSVALVGGGGGGPSVAL 126
GG GGLSVV + GGGGG VVLDGGGGGG V LDG GGGG V L G GGGG V L
Sbjct: 61 GGGGGLSVVFD---GGGGGLPVVLDGGGGGGLPVVLDGAGGGGLPVVLDGAGGGGLPVVL 120
Query: 127 VGGGGGGPSVALDGGGGGGLSVALDDGGGSGGLSVALDGGGGGGG 172
G GGGG V LDG GGGGL V L DGGG G SV +GGGGGGG
Sbjct: 121 DGAGGGGLPVVLDGAGGGGLPVVL-DGGGGGAPSVVFNGGGGGGG 147
BLAST of Lsi04G000650 vs. NCBI nr
Match:
XP_022957272.1 (loricrin-like [Cucurbita moschata])
HSP 1 Score: 136.0 bits (341), Expect = 3.6e-28
Identity = 100/145 (68.97%), Postives = 106/145 (73.10%), Query Frame = 0
Query: 1 MITPNAIPAFCPPLSPFESPPPFSFNALLVGGAGGGDEPTSGGGAGGEIMVPLGGGGGDE 60
+ITPNA+PAFCPPLSPFES PPFSFNAL V GAGGGDE TSG GAGGE++V GGGG
Sbjct: 14 IITPNAMPAFCPPLSPFESAPPFSFNALFVPGAGGGDELTSGEGAGGEMLV--SGGGGGL 73
Query: 61 LVVLDGGGEGGLSVVLEGGGGGGGGPLVVLDGGGGGGPSVALDGGGGGGPSVALVGGGGG 120
VV DGGG GGL VVL+ GGGGGG VVLDG GGGG V LDG GGGG V L GGG
Sbjct: 74 SVVFDGGG-GGLPVVLD--GGGGGGLPVVLDGAGGGGLPVVLDGAGGGGLPVVLDGGG-- 133
Query: 121 GPSVALVGGGGGGPSVALDGGGGGG 146
GGGGG PSV +GGGGGG
Sbjct: 134 -------GGGGGAPSVVFNGGGGGG 144
BLAST of Lsi04G000650 vs. NCBI nr
Match:
XP_016900208.1 (PREDICTED: loricrin-like [Cucumis melo])
HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27
Identity = 107/153 (69.93%), Postives = 113/153 (73.86%), Query Frame = 0
Query: 54 GGGGGDELVVLDGGGEGGLSVVLEGGGGGGGGPLVVLDGGGGGGPSVALDGGGGGGPSVA 113
GGGGGDELVVLDGG GG+SVVL+GGGGG VV DGGGGGG SV DGGGGGG SV
Sbjct: 7 GGGGGDELVVLDGG--GGVSVVLDGGGGGVS---VVFDGGGGGGVSVVFDGGGGGGVSVV 66
Query: 114 LVGGGGGGPSVALVGGGGGGPSVALDGGGGGGLSVALDDG---------GGSGGLSVALD 173
GGGGGG SV GGGGGG V LDGGGGGG+SV D G GG GG+SV LD
Sbjct: 67 FDGGGGGGVSVVFDGGGGGGVLVVLDGGGGGGVSVVFDGGGGGVSVVFDGGGGGVSVMLD 126
Query: 174 GGGGGGGLSVALDGDGGGGLSVALDGGGGGDAS 198
GGGGGG+SV LDG GGGG+SV LDGGGGGDAS
Sbjct: 127 -GGGGGGVSVVLDGGGGGGVSVGLDGGGGGDAS 153
BLAST of Lsi04G000650 vs. NCBI nr
Match:
XP_023549817.1 (glycine-rich cell wall structural protein-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 131.3 bits (329), Expect = 8.9e-27
Identity = 95/146 (65.07%), Postives = 101/146 (69.18%), Query Frame = 0
Query: 1 MITPNAIPAFCPPLSPFESPPPFSFNALLVGGAGGGDEPTSGGGAGGEIMVPLGGGGGDE 60
MITPNA+PAFCPPLSPFES PPFSFNAL V GAG GDE TSG GAGGE++V
Sbjct: 30 MITPNAMPAFCPPLSPFESAPPFSFNALFVAGAGAGDELTSGEGAGGEMLV--------- 89
Query: 61 LVVLDGGGEGGLSVVLEGGGGGGGGPLVVLDGGGGGGPSVALDGGGGGGPSVALVGGGGG 120
GG GGLSVV + GGGGGP VV +GGGGGG V LD GGGG V L G GGG
Sbjct: 90 -----SGGGGGLSVVFD---GGGGGPSVVFNGGGGGGLPVVLDAAGGGGLPVVLDGAGGG 149
Query: 121 GPSVALVGGGGGG-PSVALDGGGGGG 146
G V L GGGGGG PSV +GGGGGG
Sbjct: 150 GLPVVLDGGGGGGAPSVVFNGGGGGG 158
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GYP3 | 1.7e-28 | 68.97 | loricrin-like OS=Cucurbita moschata OX=3662 GN=LOC111458710 PE=4 SV=1 | [more] |
A0A1S4DW63 | 8.7e-28 | 69.93 | loricrin-like OS=Cucumis melo OX=3656 GN=LOC103489470 PE=4 SV=1 | [more] |
A0A6J1JS83 | 1.3e-23 | 63.01 | glycine-rich cell wall structural protein 1.0-like OS=Cucurbita maxima OX=3661 G... | [more] |
A0A6I8T397 | 2.3e-12 | 52.73 | Cysteine-rich venom protein, putative OS=Aedes aegypti OX=7159 GN=110675135 PE=4... | [more] |
A0A2B7ZNF9 | 7.4e-11 | 52.91 | Uncharacterized protein (Fragment) OS=Emmonsia crescens OX=73230 GN=GX50_02507 P... | [more] |
Match Name | E-value | Identity | Description | |