Lsi04G000100 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G000100
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr04: 156028 .. 157584 (-)
RNA-Seq Expression	Lsi04G000100
Synteny	Lsi04G000100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACGTATATGACAAATGCTTGGATCCTGAATCAGCAATTTCAGACTAAAAACTGATCTGATTTTTAATTGTGTTGGAGCCTGTACTGTTCCGTTTGTGTTACTTTATAGTAGCAGAAGATTCATCCGTGAAGTTTACCAATTTTGACTCTTAATTTTTGATATTTAAGTTATATTAATGGGCATTGAGAATGTAAACGAGTTAAGCTAGTTAACTTTAGACTTATATTGCTCCATGTCTCTAATATCATCATAGTATGGTCGTTGAGACTATTAGTTTTGTTTTATTATTGTATTATCGTTGTATTTTCATAACACAACGAAGAATTTGGTTTTTTAGGAATTAACTAGCCTTTACAATTGCGTTGAATAATGGGCCTTGACAAGGATTTGATATAATTTTGGATTTTAATGATTCTTTTTTTACTAAAATCCAAGCTTTTGTACGCAATTCGACTAGGCAAAAGGGAAAAATGTGTTTTGGTTTCTCCTCATTCTTTTAGGGGTGTTTGAAGCAAAGAGTTCAGATGTGAAGTCATGGGCTCACCAATGGAAGGATTGAGATTACTAATGACGGATGGAGGTTGAGTCTCGAGCATGTTCAGTGCCTCGCCCTTGTCTCCTTCGCCTACGACTGCTTAGAATGGTCATCCTATCGATTCAGAGGCATAGTCCCTCTCTGGGCCCCCAACACACTCGTCGAGACGAAATCACCCTCTCGCCATAGAGAAGAGATCTCGACGTCTGGGTCCCCTCTCGATCACCCTTCCCTTTCACCTGAACTGGTCGAGAGAGATGAATTCGTACCACATACATTTTATAACCTTCGAATCGAAACCCCCAACGTTAGATGGAATTTTAGAACCTAAACAACTCAGTTGAGAGCTCCGTGACTGGTGAAAGGGAAGGTCCACCAATGATTGATAGGCCATTCCCACCCTATCCGTCTCTTGATCCCTCATTCCACTAATGAGTTGTTACTGATTCATTCAAGGAAGGCATAGACCCCCACTTCTTTGTCTTATTAGCGCTGGTGTTCGTCAACAATGAAAGCCGCTGAACTTTAGACTCGAGTTGAGAAAGAGGGCTAGGCCCAGGAGAGGAGGGCTTGATGGGACTAGGGAAGACGGGTGGATTATAGAGCTAGGGGCAGATTGGATCGAAGGTTTGTCCATTGGGATTGGGCATGGACGAGCCTCGACTGGGCCAGCATTGATGAAAAAATGACAAAAGAGAAACTTCATCCATCCATCGGATCATTAACCGGTGTAGGATTAAAGATCAGGTCCAGGATTCGAGTCAAATCGACCTTCCCTCTCATCTCAGGGTGAGGCAAGGAATTCCATCAAATGTTTGTTGTTCAATATCTCGGCTGCTCAAGAAGTTGGACTAGCTGCTCCTCCGACCCGACCCGGAGTGGATTCTAGGAGAAGGGAAGGGCGGGCAGAGCCTCACCTTGCAGTAGGAGGGTTTTCGTTGCTGGGACGGGGGTTTCAAACAGGACTGAAGGGAGGAGGAATTCCATACTCCAATCTTACTGGGGATTCAAGCTAG

mRNA sequence

ATGCAAACTCATGGGCTCACCAATGGAAGGATTGAGATTACTAATGACGGATGGAGGTTGAGTCTCGAGCATGTTCAGTGCCTCGCCCTTGTCTCCTTCGCCTACGACTGCTTAGAATGGTCATCCTATCGATTCAGAGGCATAGTCCCTCTCTGGGCCCCCAACACACTCGTCGAGACGAAATCACCCTCTCGCCATAGAGAAGAGATCTCGACGTCTGGGTCCCCTCTCGATCACCCTTCCCTTTCACCTGAACTGGTCGAGAGAGATGAATTCGTACCACATACATTTTATAACCTTCGAATCGAAACCCCCAACCCGCTGAACTTTAGACTCGAGTTGAGAAAGAGGGCTAGGCCCAGGAGAGGAGGGCTTGATGGGACTAGGGAAGACGGGTGGATTATAGAGCTAGGGGCAGATTGGATCGAAGGTCCAGGATTCGAGTCAAATCGACCTTCCCTCTCATCTCAGGGTGAGGCAAGGAATTCCATCAAATGTTTGTTGTTCAATATCTCGGCTGCTCAAGAAGTTGGACTAGCTGCTCCTCCGACCCGACCCGGAGTGGATTCTAGGAGAAGGGAAGGGCGGGCAGAGCCTCACCTTGCAGTAGGAGGGTTTTCGTTGCTGGGACGGGGGTTTCAAACAGGACTGAAGGGAGGAGGAATTCCATACTCCAATCTTACTGGGGATTCAAGCTAG

Coding sequence (CDS)

ATGCAAACTCATGGGCTCACCAATGGAAGGATTGAGATTACTAATGACGGATGGAGGTTGAGTCTCGAGCATGTTCAGTGCCTCGCCCTTGTCTCCTTCGCCTACGACTGCTTAGAATGGTCATCCTATCGATTCAGAGGCATAGTCCCTCTCTGGGCCCCCAACACACTCGTCGAGACGAAATCACCCTCTCGCCATAGAGAAGAGATCTCGACGTCTGGGTCCCCTCTCGATCACCCTTCCCTTTCACCTGAACTGGTCGAGAGAGATGAATTCGTACCACATACATTTTATAACCTTCGAATCGAAACCCCCAACCCGCTGAACTTTAGACTCGAGTTGAGAAAGAGGGCTAGGCCCAGGAGAGGAGGGCTTGATGGGACTAGGGAAGACGGGTGGATTATAGAGCTAGGGGCAGATTGGATCGAAGGTCCAGGATTCGAGTCAAATCGACCTTCCCTCTCATCTCAGGGTGAGGCAAGGAATTCCATCAAATGTTTGTTGTTCAATATCTCGGCTGCTCAAGAAGTTGGACTAGCTGCTCCTCCGACCCGACCCGGAGTGGATTCTAGGAGAAGGGAAGGGCGGGCAGAGCCTCACCTTGCAGTAGGAGGGTTTTCGTTGCTGGGACGGGGGTTTCAAACAGGACTGAAGGGAGGAGGAATTCCATACTCCAATCTTACTGGGGATTCAAGCTAG

Protein sequence

MQTHGLTNGRIEITNDGWRLSLEHVQCLALVSFAYDCLEWSSYRFRGIVPLWAPNTLVETKSPSRHREEISTSGSPLDHPSLSPELVERDEFVPHTFYNLRIETPNPLNFRLELRKRARPRRGGLDGTREDGWIIELGADWIEGPGFESNRPSLSSQGEARNSIKCLLFNISAAQEVGLAAPPTRPGVDSRRREGRAEPHLAVGGFSLLGRGFQTGLKGGGIPYSNLTGDSS

Homology

[Close]

BLAST of Lsi04G000100 vs. ExPASy TrEMBL
Match: A0A5N6NJT0 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_20508 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 96/229 (41.92%), Postives = 115/229 (50.22%), Query Frame = 0


Query: 10  RIEITNDGWRLSLEHVQCLALVSFAYDCLEWSSYRFRGIVPLWAPNTLVETKSPSRHREE 69
           RIEITNDGWRL +EHV+ LAL+SFA                                  E
Sbjct: 77  RIEITNDGWRLRIEHVRSLALISFA----------------------------------E 136

Query: 70  ISTSGSPLDHPSLSPELVERDEFVPHTFYNLRIETPNP-------LNFRLELRKRARPRR 129
            +  G+P+D          ++E   +    LR+E   P       + + +EL  +  P  
Sbjct: 137 TANDGNPID----------KEEVFVNDESRLRLEGLGPGRAFRDWVGWIIELGAKVCPLG 196

Query: 130 GGLD--------GTREDGWIIEL-GADWIEGPGFESNRPSLSSQGEARNSIKCLLFNISA 189
            G+D          R+   I  L G  +  GPGFESNRPS   + EARNS KC  FN+SA
Sbjct: 197 LGMDDWPALMKNDKRKTSPIASLTGVGFRSGPGFESNRPSSHLRVEARNSSKCSFFNLSA 255

Query: 190 AQEVGLAAPPTRPGVDSRRREGRAEPHLAVGGFSLLGRGFQTGLKGGGI 223
           AQEVGLAAPPT  GVDS    GRAE  LAVG  SLLGR  QTGLKGGGI
Sbjct: 257 AQEVGLAAPPT--GVDS---SGRAEQSLAVGRCSLLGR-VQTGLKGGGI 255

[Close]

BLAST of Lsi04G000100 vs. ExPASy TrEMBL
Match: A0A6A5P6N5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00015556 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 68/125 (54.40%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 108 LNFRLELRKRARPRRGGLDGTREDGWIIELGADWIEGPGFESNRPSLSSQGEARNSIKCL 167
           L  RLELRKRARPR GGL GTR             EGPGFESNRPSLSSQGEA  S    
Sbjct: 6   LKIRLELRKRARPRIGGLSGTR-------------EGPGFESNRPSLSSQGEASCS---- 65

Query: 168 LFNISAAQEVGLAAPPTRPGVDSRRREGRAEPHLAVGGFSLLGRGFQTGLKGGGIPYSNL 227
                       ++   R G+ SR   GRAEPHLAVG FSLLGR      KGGG+  S+L
Sbjct: 66  -----------HSSNKRRSGLPSR---GRAEPHLAVGRFSLLGR----VQKGGGMKDSDL 95

Query: 228 TGDSS 233
           TGDSS
Sbjct: 126 TGDSS 95

[Close]

BLAST of Lsi04G000100 vs. ExPASy TrEMBL
Match: A0A6A5L9Z5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001891 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-15
Identity = 67/125 (53.60%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 108 LNFRLELRKRARPRRGGLDGTREDGWIIELGADWIEGPGFESNRPSLSSQGEARNSIKCL 167
           L  RLELRKRARPR GGL GT              EGPGFESNRPSLSSQGEA  S    
Sbjct: 6   LKIRLELRKRARPRIGGLSGTG-------------EGPGFESNRPSLSSQGEASCS---- 65

Query: 168 LFNISAAQEVGLAAPPTRPGVDSRRREGRAEPHLAVGGFSLLGRGFQTGLKGGGIPYSNL 227
                       ++   R G+ SR   GRAEPHLAVG FSLLGR      KGGG+  S+L
Sbjct: 66  -----------HSSNKRRSGLPSR---GRAEPHLAVGRFSLLGR----VQKGGGMKDSDL 95

Query: 228 TGDSS 233
           TGDSS
Sbjct: 126 TGDSS 95

[Close]

BLAST of Lsi04G000100 vs. ExPASy TrEMBL
Match: A0A5N6NMJ0 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_18586 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-13
Identity = 45/67 (67.16%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 128 TREDGWIIELGADWIEGPGFESNRPSLSSQGEARNSIKCLLFNISAAQEVGLAAPPTRPG 187
           T  DG  I+   D   GPGFESNRPSLSSQGEARNS KC  FN+SAAQEVGLAAPPTR G
Sbjct: 13  TANDGNPIDKEEDSRSGPGFESNRPSLSSQGEARNSRKCSFFNLSAAQEVGLAAPPTRSG 72

Query: 188 VDSRRRE 195
              +  E
Sbjct: 73  FYCKTEE 79

[Close]

BLAST of Lsi04G000100 vs. ExPASy TrEMBL
Match: A0A5N6NJ20 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_20506 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-13
Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 128 TREDGWIIELGADWIEGPGFESNRPSLSSQGEARNSIKCLLFNISAAQEVGLAAPPTRPG 187
           T  DG  I+   D   GPGFESNRPSLSSQGEARNS KC  FN+SAAQEVGLAAPPTR G
Sbjct: 13  TANDGNPIDKEEDSRSGPGFESNRPSLSSQGEARNSSKCSFFNLSAAQEVGLAAPPTRSG 72

[Close]

BLAST of Lsi04G000100 vs. NCBI nr
Match: KAD4888435.1 (hypothetical protein E3N88_20508 [Mikania micrantha])

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-24
Identity = 96/229 (41.92%), Postives = 115/229 (50.22%), Query Frame = 0


Query: 10  RIEITNDGWRLSLEHVQCLALVSFAYDCLEWSSYRFRGIVPLWAPNTLVETKSPSRHREE 69
           RIEITNDGWRL +EHV+ LAL+SFA                                  E
Sbjct: 77  RIEITNDGWRLRIEHVRSLALISFA----------------------------------E 136

Query: 70  ISTSGSPLDHPSLSPELVERDEFVPHTFYNLRIETPNP-------LNFRLELRKRARPRR 129
            +  G+P+D          ++E   +    LR+E   P       + + +EL  +  P  
Sbjct: 137 TANDGNPID----------KEEVFVNDESRLRLEGLGPGRAFRDWVGWIIELGAKVCPLG 196

Query: 130 GGLD--------GTREDGWIIEL-GADWIEGPGFESNRPSLSSQGEARNSIKCLLFNISA 189
            G+D          R+   I  L G  +  GPGFESNRPS   + EARNS KC  FN+SA
Sbjct: 197 LGMDDWPALMKNDKRKTSPIASLTGVGFRSGPGFESNRPSSHLRVEARNSSKCSFFNLSA 255

Query: 190 AQEVGLAAPPTRPGVDSRRREGRAEPHLAVGGFSLLGRGFQTGLKGGGI 223
           AQEVGLAAPPT  GVDS    GRAE  LAVG  SLLGR  QTGLKGGGI
Sbjct: 257 AQEVGLAAPPT--GVDS---SGRAEQSLAVGRCSLLGR-VQTGLKGGGI 255

[Close]

BLAST of Lsi04G000100 vs. NCBI nr
Match: KAF1893125.1 (hypothetical protein Lal_00015556 [Lupinus albus])

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-16
Identity = 68/125 (54.40%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 108 LNFRLELRKRARPRRGGLDGTREDGWIIELGADWIEGPGFESNRPSLSSQGEARNSIKCL 167
           L  RLELRKRARPR GGL GTR             EGPGFESNRPSLSSQGEA  S    
Sbjct: 6   LKIRLELRKRARPRIGGLSGTR-------------EGPGFESNRPSLSSQGEASCS---- 65

Query: 168 LFNISAAQEVGLAAPPTRPGVDSRRREGRAEPHLAVGGFSLLGRGFQTGLKGGGIPYSNL 227
                       ++   R G+ SR   GRAEPHLAVG FSLLGR      KGGG+  S+L
Sbjct: 66  -----------HSSNKRRSGLPSR---GRAEPHLAVGRFSLLGR----VQKGGGMKDSDL 95

Query: 228 TGDSS 233
           TGDSS
Sbjct: 126 TGDSS 95

[Close]

BLAST of Lsi04G000100 vs. NCBI nr
Match: KAF1856895.1 (hypothetical protein Lal_00001891 [Lupinus albus] >KAF1856898.1 hypothetical protein Lal_00001920 [Lupinus albus])

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-15
Identity = 67/125 (53.60%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 108 LNFRLELRKRARPRRGGLDGTREDGWIIELGADWIEGPGFESNRPSLSSQGEARNSIKCL 167
           L  RLELRKRARPR GGL GT              EGPGFESNRPSLSSQGEA  S    
Sbjct: 6   LKIRLELRKRARPRIGGLSGTG-------------EGPGFESNRPSLSSQGEASCS---- 65

Query: 168 LFNISAAQEVGLAAPPTRPGVDSRRREGRAEPHLAVGGFSLLGRGFQTGLKGGGIPYSNL 227
                       ++   R G+ SR   GRAEPHLAVG FSLLGR      KGGG+  S+L
Sbjct: 66  -----------HSSNKRRSGLPSR---GRAEPHLAVGRFSLLGR----VQKGGGMKDSDL 95

Query: 228 TGDSS 233
           TGDSS
Sbjct: 126 TGDSS 95

[Close]

BLAST of Lsi04G000100 vs. NCBI nr
Match: KAD4981915.1 (hypothetical protein E3N88_18586 [Mikania micrantha])

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-13
Identity = 45/67 (67.16%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 128 TREDGWIIELGADWIEGPGFESNRPSLSSQGEARNSIKCLLFNISAAQEVGLAAPPTRPG 187
           T  DG  I+   D   GPGFESNRPSLSSQGEARNS KC  FN+SAAQEVGLAAPPTR G
Sbjct: 13  TANDGNPIDKEEDSRSGPGFESNRPSLSSQGEARNSRKCSFFNLSAAQEVGLAAPPTRSG 72

Query: 188 VDSRRRE 195
              +  E
Sbjct: 73  FYCKTEE 79

[Close]

BLAST of Lsi04G000100 vs. NCBI nr
Match: KAD4888433.1 (hypothetical protein E3N88_20506 [Mikania micrantha])

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-13
Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 128 TREDGWIIELGADWIEGPGFESNRPSLSSQGEARNSIKCLLFNISAAQEVGLAAPPTRPG 187
           T  DG  I+   D   GPGFESNRPSLSSQGEARNS KC  FN+SAAQEVGLAAPPTR G
Sbjct: 13  TANDGNPIDKEEDSRSGPGFESNRPSLSSQGEARNSSKCSFFNLSAAQEVGLAAPPTRSG 72

The following BLAST results are available for this feature:

BLAST of Lsi04G000100 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G000100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6NJT0	1.1e-24	41.92	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_20508 PE=4 SV=1	[more]
A0A6A5P6N5	1.8e-16	54.40	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00015556 PE=4 SV=1	[more]
A0A6A5L9Z5	1.2e-15	53.60	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001891 PE=4 SV=1	[more]
A0A5N6NMJ0	1.9e-13	67.16	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_18586 PE=4 SV=1	[more]
A0A5N6NJ20	2.4e-13	73.33	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_20506 PE=4 SV=1	[more]

BLAST of Lsi04G000100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAD4888435.1	2.2e-24	41.92	hypothetical protein E3N88_20508 [Mikania micrantha]	[more]
KAF1893125.1	3.7e-16	54.40	hypothetical protein Lal_00015556 [Lupinus albus]	[more]
KAF1856895.1	2.4e-15	53.60	hypothetical protein Lal_00001891 [Lupinus albus] >KAF1856898.1 hypothetical pro...	[more]
KAD4981915.1	3.9e-13	67.16	hypothetical protein E3N88_18586 [Mikania micrantha]	[more]
KAD4888433.1	5.0e-13	73.33	hypothetical protein E3N88_20506 [Mikania micrantha]	[more]

BLAST of Lsi04G000100 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000100.1	Lsi04G000100.1	mRNA