Lsi03G022760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G022760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-H2 finger protein ATL74-like
Location	chr03: 33671093 .. 33671578 (+)
RNA-Seq Expression	Lsi03G022760
Synteny	Lsi03G022760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACAGAGGTGGTGCAGGGGAATAGGACGGGTAATTCGTCTTATGTGGGGGAGATGAATTTCGATGCGCACATGGTGGTAATAATGGCGGCCTTATTATGTGCACTCATTGGAGCCCTTGGAGTGAACTCTATCGTACGCTGCGTTTTGCGGTGTGGGTATAGGTTTGGGAGGGAGAGGGCAGATCAGGAGGGCGCACCGGCACCGGGGCTTAAGAAGCGAGAACTCAGTCTGATTCCGATTGGGGTTTATGGAAGTGATGCAAATATTAAGAGCACAGATTGCGGAATTTGCCTTGCCCAGTTTGAAGAGGGCGACAAGCTTAGAATGTTGCCCATTTGCAACCATGGATTCCACCTCACATGCATTGATACCTGGCTCTTCTCTCACTCATCTTGTCCCAACTGCCGCCATTCCCTCAAACCCAAACAACCCGCCCCGCCGCCACCCCACGTCGTTCTGCTCATAGGGACTGCAAATTAG

mRNA sequence

ATGGAAACAGAGGTGGTGCAGGGGAATAGGACGGGTAATTCGTCTTATGTGGGGGAGATGAATTTCGATGCGCACATGGTGGTAATAATGGCGGCCTTATTATGTGCACTCATTGGAGCCCTTGGAGTGAACTCTATCGTACGCTGCGTTTTGCGGTGTGGGTATAGGTTTGGGAGGGAGAGGGCAGATCAGGAGGGCGCACCGGCACCGGGGCTTAAGAAGCGAGAACTCAGTCTGATTCCGATTGGGGTTTATGGAAGTGATGCAAATATTAAGAGCACAGATTGCGGAATTTGCCTTGCCCAGTTTGAAGAGGGCGACAAGCTTAGAATGTTGCCCATTTGCAACCATGGATTCCACCTCACATGCATTGATACCTGGCTCTTCTCTCACTCATCTTGTCCCAACTGCCGCCATTCCCTCAAACCCAAACAACCCGCCCCGCCGCCACCCCACGTCGTTCTGCTCATAGGGACTGCAAATTAG

Coding sequence (CDS)

ATGGAAACAGAGGTGGTGCAGGGGAATAGGACGGGTAATTCGTCTTATGTGGGGGAGATGAATTTCGATGCGCACATGGTGGTAATAATGGCGGCCTTATTATGTGCACTCATTGGAGCCCTTGGAGTGAACTCTATCGTACGCTGCGTTTTGCGGTGTGGGTATAGGTTTGGGAGGGAGAGGGCAGATCAGGAGGGCGCACCGGCACCGGGGCTTAAGAAGCGAGAACTCAGTCTGATTCCGATTGGGGTTTATGGAAGTGATGCAAATATTAAGAGCACAGATTGCGGAATTTGCCTTGCCCAGTTTGAAGAGGGCGACAAGCTTAGAATGTTGCCCATTTGCAACCATGGATTCCACCTCACATGCATTGATACCTGGCTCTTCTCTCACTCATCTTGTCCCAACTGCCGCCATTCCCTCAAACCCAAACAACCCGCCCCGCCGCCACCCCACGTCGTTCTGCTCATAGGGACTGCAAATTAG

Protein sequence

METEVVQGNRTGNSSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERADQEGAPAPGLKKRELSLIPIGVYGSDANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCIDTWLFSHSSCPNCRHSLKPKQPAPPPPHVVLLIGTAN

Homology

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BLAST of Lsi03G022760 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.2e-41
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 8   GNRT----GNSSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERAD 67
           GN T    G   Y  +MNFDA+MV+I+AALLCALI ALG+NSI+RC +RCG+      A 
Sbjct: 12  GNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAA 71

Query: 68  QEGAPAPGLKKRELSLIPIGVYGS-DANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLT 127
              A   GLKKREL   P+  YGS +  I +T+C ICL +F +G+++R+LP CNH FH++
Sbjct: 72  GTVADRAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMS 131

Query: 128 CIDTWLFSHSSCPNCRHSL 142
           CIDTWL SHSSCPNCRHSL
Sbjct: 132 CIDTWLVSHSSCPNCRHSL 150

[Close]

BLAST of Lsi03G022760 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-37
Identity = 74/140 (52.86%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 8   GNRTGNSSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRF--GRERADQE 67
           G+   N+  +  M  D HMV+I+AALLCALI ALG+NS++RCVLRC  RF    +  D  
Sbjct: 25  GDSVSNNKNIASM--DTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTN 84

Query: 68  GAPAPGLKKRELSLIPIGVYGSDANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCID 127
              A G+KKR L +IP+  Y  +  +K+T+C ICL  F EG+ +R+LP CNHGFH+ CID
Sbjct: 85  ANVAKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCID 144

Query: 128 TWLFSHSSCPNCRHSLKPKQ 146
           TWL SHSSCP CR SL   Q
Sbjct: 145 TWLLSHSSCPTCRQSLLEHQ 162

[Close]

BLAST of Lsi03G022760 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-34
Identity = 74/143 (51.75%), Postives = 96/143 (67.13%), Query Frame = 0


Query: 17  VGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERADQEG---------- 76
           + +  FD +MV+I+AALLCALI AL +NS +RCVLR   RF  +                
Sbjct: 24  INDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRL 83

Query: 77  APAPGLKKRELSLIPIGVYGSD-ANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCID 136
           A A GLKK+ L  IP+G+YGS   ++K+T+C ICL  FE+G+K+R+LP CNHGFH+ CID
Sbjct: 84  AAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCID 143

Query: 137 TWLFSHSSCPNCRHSLKPKQPAP 149
           TWL S SSCP CR SL  +QP+P
Sbjct: 144 TWLLSRSSCPTCRQSLLLEQPSP 166

[Close]

BLAST of Lsi03G022760 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.1e-29
Identity = 60/134 (44.78%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 14  SSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERADQEGAPA---- 73
           S YVG+ NFDA++V++++ LLCAL+ +LG+NSI+RC LRC      E A  +  P     
Sbjct: 44  SPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSE-AGGDNYPVRLTN 103

Query: 74  PGLKKRELSLIPIGVYGSDANIK--STDCGICLAQFEEGDKLRMLPICNHGFHLTCIDTW 133
            G+K++ L       Y ++ N+    T+C ICL++F   +++++LP C+HGFH+ CID W
Sbjct: 104 TGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKW 163

Query: 134 LFSHSSCPNCRHSL 142
           L SHSSCP CRH L
Sbjct: 164 LSSHSSCPTCRHCL 176

[Close]

BLAST of Lsi03G022760 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-23
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 23  DAHMVVIMAALLCALIGALGVNSIVRCV----LRCGYRFGRERADQEGAPAP-------G 82
           ++ +VVI+AALLCALI  LG+ ++ RCV    L  G R       Q  +P P       G
Sbjct: 27  NSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNR--TVSGSQTQSPQPPVAAANKG 86

Query: 83  LKKRELSLIPIGVYG--SDANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCIDTWLF 142
           LKK+ L  +P   +   S  + K  +C ICLA+F  GD+LR+LP C HGFH+ CIDTWL 
Sbjct: 87  LKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLG 146

[Close]

BLAST of Lsi03G022760 vs. ExPASy TrEMBL
Match: A0A1S3B8C4 (RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103487125 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.3e-57
Identity = 113/156 (72.44%), Postives = 128/156 (82.05%), Query Frame = 0


Query: 7   QGNRTGN-SSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERADQE 66
           QGNRT N S+YVGE+NFD HM + +AALLC LIGA+GVNSIVRC LRC Y F  ERA +E
Sbjct: 13  QGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERA-EE 72

Query: 67  GAPAPGLKKRELSLIPIGVYGSDANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCID 126
            A A GLKK+EL+LIPIGVYGSDANIKSTDC ICLAQFE GDKLRMLPICNHGFHLTCID
Sbjct: 73  DASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCID 132

Query: 127 TWLFSHSSCPNCRHSLKPKQPAPPPPHVVLLIGTAN 162
           TWL S+ SCPNCR S+KP   +   PH+V++I + N
Sbjct: 133 TWLLSNFSCPNCRQSVKPPHTS---PHIVVIIDSVN 164

[Close]

BLAST of Lsi03G022760 vs. ExPASy TrEMBL
Match: A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 6.8e-55
Identity = 111/152 (73.03%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 7   QGNRTGN-SSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERADQE 66
           QGNRT N S+YVGE+NFD HM + +AALLC LIGA+GVNSIVRC LR  Y F  ERA +E
Sbjct: 13  QGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRRRYSFETERA-EE 72

Query: 67  GAPAPGLKKRELSLIPIGVYGSDANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCID 126
            A A GLKK+EL+LIPIGVYGSDANIKSTDC ICLAQFE GDKLRMLPICNHGFHLTCID
Sbjct: 73  DASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCID 132

Query: 127 TWLFSHSSCPNCRHSLKPKQPAPPPPHVVLLI 158
           TWL S+ SCPNCR S+KP   +   PH+V++I
Sbjct: 133 TWLLSNFSCPNCRQSVKPPHTS---PHIVVII 160

[Close]

BLAST of Lsi03G022760 vs. ExPASy TrEMBL
Match: A0A6J1I6E6 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.8e-54
Identity = 118/178 (66.29%), Postives = 133/178 (74.72%), Query Frame = 0


Query: 1   METEVVQGNRTGNSS-YVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGR 60
           + TE VQGN T NSS YVGEMN DAHMVVI+AALL ALIGALGVN++VRCVL  G+RF  
Sbjct: 10  LATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNALVRCVLSLGFRFRT 69

Query: 61  ERADQEGA--PAPGLKKRELSLIPIGVYGSD-ANIKSTDCGICLAQFEEGDKLRMLPICN 120
           ER ++  A   A GLKKRELS IP+GVYGSD A IK TDC ICL +FE GDK+RMLPICN
Sbjct: 70  ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPICN 129

Query: 121 HGFHLTCIDTWLFSHSSCPNCRHSL-----KPKQ------PAPPPP------HVVLLI 158
           HGFH+ CIDTWL SHSSCPNCRHSL     K K+      PAPPPP      HVV+++
Sbjct: 130 HGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDAVTVSPAPPPPRGSASSHVVVVV 187

[Close]

BLAST of Lsi03G022760 vs. ExPASy TrEMBL
Match: A0A6J1EVU3 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.3e-50
Identity = 116/178 (65.17%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   METEVVQGNRTGNSS-YVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGR 60
           + TE V GN T NSS YVGEMN DAHMVVI+AALL ALIGALGVNS+VRCVL  G+RF R
Sbjct: 10  LATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRF-R 69

Query: 61  ERADQEGA--PAPGLKKRELSLIPIGVYGSD-ANIKSTDCGICLAQFEEGDKLRMLPICN 120
           ER ++  A   A GLKKRELS IP+GVYGSD A IK TDC ICL +FE GDK+RMLP CN
Sbjct: 70  ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPNCN 129

Query: 121 HGFHLTCIDTWLFSHSSCPNCRHSL-----KPKQ-------PAPPP-----PHVVLLI 158
           HGFH+ CIDTWL SHSSCPNCRHSL     K K+       P PPP      HVV+++
Sbjct: 130 HGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASSHVVVVV 186

[Close]

BLAST of Lsi03G022760 vs. ExPASy TrEMBL
Match: A0A6J1DW47 (RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111024041 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 105/173 (60.69%), Postives = 123/173 (71.10%), Query Frame = 0


Query: 7   QGNRTGNSSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERADQEG 66
           + NRTG+S+YVGEMN DA+MVVI+AAL CALIGALG+NSIVRCVLRC       ++ +  
Sbjct: 20  EANRTGDSAYVGEMNLDANMVVILAALSCALIGALGMNSIVRCVLRC------SQSPEGA 79

Query: 67  APAPGLKKRELSLIPIGVY-------GSDANIKSTDCGICLAQFEEGDKLRMLPICNHGF 126
           A A GLKKR+L  IP+GVY       G+  NIK TDC ICL +F+ GDKLRMLP+CNHGF
Sbjct: 80  AAATGLKKRDLGQIPVGVYGIGGGDGGNMVNIKGTDCAICLGEFQPGDKLRMLPVCNHGF 139

Query: 127 HLTCIDTWLFSHSSCPNCRHS-----LKPKQPA----PPP------PHVVLLI 158
           H+ CIDTWL SHSSCPNCRHS     LK K+ A    PPP       HVVLL+
Sbjct: 140 HVRCIDTWLLSHSSCPNCRHSLLHPPLKVKEIAAVSQPPPASASTQAHVVLLL 186

[Close]

BLAST of Lsi03G022760 vs. NCBI nr
Match: XP_008443568.1 (PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 6.7e-57
Identity = 113/156 (72.44%), Postives = 128/156 (82.05%), Query Frame = 0


Query: 7   QGNRTGN-SSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERADQE 66
           QGNRT N S+YVGE+NFD HM + +AALLC LIGA+GVNSIVRC LRC Y F  ERA +E
Sbjct: 13  QGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERA-EE 72

Query: 67  GAPAPGLKKRELSLIPIGVYGSDANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCID 126
            A A GLKK+EL+LIPIGVYGSDANIKSTDC ICLAQFE GDKLRMLPICNHGFHLTCID
Sbjct: 73  DASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCID 132

Query: 127 TWLFSHSSCPNCRHSLKPKQPAPPPPHVVLLIGTAN 162
           TWL S+ SCPNCR S+KP   +   PH+V++I + N
Sbjct: 133 TWLLSNFSCPNCRQSVKPPHTS---PHIVVIIDSVN 164

[Close]

BLAST of Lsi03G022760 vs. NCBI nr
Match: KAA0044224.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 111/152 (73.03%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 7   QGNRTGN-SSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERADQE 66
           QGNRT N S+YVGE+NFD HM + +AALLC LIGA+GVNSIVRC LR  Y F  ERA +E
Sbjct: 13  QGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRRRYSFETERA-EE 72

Query: 67  GAPAPGLKKRELSLIPIGVYGSDANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCID 126
            A A GLKK+EL+LIPIGVYGSDANIKSTDC ICLAQFE GDKLRMLPICNHGFHLTCID
Sbjct: 73  DASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCID 132

Query: 127 TWLFSHSSCPNCRHSLKPKQPAPPPPHVVLLI 158
           TWL S+ SCPNCR S+KP   +   PH+V++I
Sbjct: 133 TWLLSNFSCPNCRQSVKPPHTS---PHIVVII 160

[Close]

BLAST of Lsi03G022760 vs. NCBI nr
Match: XP_022971293.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 118/178 (66.29%), Postives = 133/178 (74.72%), Query Frame = 0


Query: 1   METEVVQGNRTGNSS-YVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGR 60
           + TE VQGN T NSS YVGEMN DAHMVVI+AALL ALIGALGVN++VRCVL  G+RF  
Sbjct: 10  LATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNALVRCVLSLGFRFRT 69

Query: 61  ERADQEGA--PAPGLKKRELSLIPIGVYGSD-ANIKSTDCGICLAQFEEGDKLRMLPICN 120
           ER ++  A   A GLKKRELS IP+GVYGSD A IK TDC ICL +FE GDK+RMLPICN
Sbjct: 70  ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPICN 129

Query: 121 HGFHLTCIDTWLFSHSSCPNCRHSL-----KPKQ------PAPPPP------HVVLLI 158
           HGFH+ CIDTWL SHSSCPNCRHSL     K K+      PAPPPP      HVV+++
Sbjct: 130 HGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDAVTVSPAPPPPRGSASSHVVVVV 187

[Close]

BLAST of Lsi03G022760 vs. NCBI nr
Match: XP_023540727.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.2 bits (539), Expect = 3.2e-51
Identity = 107/145 (73.79%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 1   METEVVQGNRTGNSS-YVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGR 60
           + TE V GN T NSS YVGEMN DAHMVVI+AALL ALIGALGVNS+VRCVL  G+RF  
Sbjct: 10  LATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRT 69

Query: 61  ERADQEGA--PAPGLKKRELSLIPIGVYGSD-ANIKSTDCGICLAQFEEGDKLRMLPICN 120
           ER ++  A   A GLKKRELS IP+GVYGSD A IK TDC ICL +FE GDK+RMLPICN
Sbjct: 70  ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPICN 129

Query: 121 HGFHLTCIDTWLFSHSSCPNCRHSL 142
           HGFH+ CIDTWL SHSSCPNCRHSL
Sbjct: 130 HGFHVRCIDTWLLSHSSCPNCRHSL 154

[Close]

BLAST of Lsi03G022760 vs. NCBI nr
Match: XP_022930638.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027864.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.1 bits (531), Expect = 2.7e-50
Identity = 116/178 (65.17%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   METEVVQGNRTGNSS-YVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGR 60
           + TE V GN T NSS YVGEMN DAHMVVI+AALL ALIGALGVNS+VRCVL  G+RF R
Sbjct: 10  LATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRF-R 69

Query: 61  ERADQEGA--PAPGLKKRELSLIPIGVYGSD-ANIKSTDCGICLAQFEEGDKLRMLPICN 120
           ER ++  A   A GLKKRELS IP+GVYGSD A IK TDC ICL +FE GDK+RMLP CN
Sbjct: 70  ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPNCN 129

Query: 121 HGFHLTCIDTWLFSHSSCPNCRHSL-----KPKQ-------PAPPP-----PHVVLLI 158
           HGFH+ CIDTWL SHSSCPNCRHSL     K K+       P PPP      HVV+++
Sbjct: 130 HGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASSHVVVVV 186

[Close]

BLAST of Lsi03G022760 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-42
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 8   GNRT----GNSSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERAD 67
           GN T    G   Y  +MNFDA+MV+I+AALLCALI ALG+NSI+RC +RCG+      A 
Sbjct: 12  GNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAA 71

Query: 68  QEGAPAPGLKKRELSLIPIGVYGS-DANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLT 127
              A   GLKKREL   P+  YGS +  I +T+C ICL +F +G+++R+LP CNH FH++
Sbjct: 72  GTVADRAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMS 131

Query: 128 CIDTWLFSHSSCPNCRHSL 142
           CIDTWL SHSSCPNCRHSL
Sbjct: 132 CIDTWLVSHSSCPNCRHSL 150

[Close]

BLAST of Lsi03G022760 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-38
Identity = 74/140 (52.86%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 8   GNRTGNSSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRF--GRERADQE 67
           G+   N+  +  M  D HMV+I+AALLCALI ALG+NS++RCVLRC  RF    +  D  
Sbjct: 25  GDSVSNNKNIASM--DTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTN 84

Query: 68  GAPAPGLKKRELSLIPIGVYGSDANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCID 127
              A G+KKR L +IP+  Y  +  +K+T+C ICL  F EG+ +R+LP CNHGFH+ CID
Sbjct: 85  ANVAKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCID 144

Query: 128 TWLFSHSSCPNCRHSLKPKQ 146
           TWL SHSSCP CR SL   Q
Sbjct: 145 TWLLSHSSCPTCRQSLLEHQ 162

[Close]

BLAST of Lsi03G022760 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-36
Identity = 74/143 (51.75%), Postives = 96/143 (67.13%), Query Frame = 0


Query: 17  VGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERADQEG---------- 76
           + +  FD +MV+I+AALLCALI AL +NS +RCVLR   RF  +                
Sbjct: 24  INDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRL 83

Query: 77  APAPGLKKRELSLIPIGVYGSD-ANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCID 136
           A A GLKK+ L  IP+G+YGS   ++K+T+C ICL  FE+G+K+R+LP CNHGFH+ CID
Sbjct: 84  AAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCID 143

Query: 137 TWLFSHSSCPNCRHSLKPKQPAP 149
           TWL S SSCP CR SL  +QP+P
Sbjct: 144 TWLLSRSSCPTCRQSLLLEQPSP 166

[Close]

BLAST of Lsi03G022760 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-30
Identity = 60/134 (44.78%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 14  SSYVGEMNFDAHMVVIMAALLCALIGALGVNSIVRCVLRCGYRFGRERADQEGAPA---- 73
           S YVG+ NFDA++V++++ LLCAL+ +LG+NSI+RC LRC      E A  +  P     
Sbjct: 44  SPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSE-AGGDNYPVRLTN 103

Query: 74  PGLKKRELSLIPIGVYGSDANIK--STDCGICLAQFEEGDKLRMLPICNHGFHLTCIDTW 133
            G+K++ L       Y ++ N+    T+C ICL++F   +++++LP C+HGFH+ CID W
Sbjct: 104 TGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKW 163

Query: 134 LFSHSSCPNCRHSL 142
           L SHSSCP CRH L
Sbjct: 164 LSSHSSCPTCRHCL 176

[Close]

BLAST of Lsi03G022760 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-24
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 23  DAHMVVIMAALLCALIGALGVNSIVRCV----LRCGYRFGRERADQEGAPAP-------G 82
           ++ +VVI+AALLCALI  LG+ ++ RCV    L  G R       Q  +P P       G
Sbjct: 27  NSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNR--TVSGSQTQSPQPPVAAANKG 86

Query: 83  LKKRELSLIPIGVYG--SDANIKSTDCGICLAQFEEGDKLRMLPICNHGFHLTCIDTWLF 142
           LKK+ L  +P   +   S  + K  +C ICLA+F  GD+LR+LP C HGFH+ CIDTWL 
Sbjct: 87  LKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLG 146

The following BLAST results are available for this feature:

BLAST of Lsi03G022760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	3.2e-41	56.83	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9FLC6	2.8e-37	52.86	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9SG96	1.3e-34	51.75	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q6NQG7	8.1e-29	44.78	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q9LM69	2.3e-23	46.97	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]

BLAST of Lsi03G022760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B8C4	3.3e-57	72.44	RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103487125 PE=4 S...	[more]
A0A5A7TM08	6.8e-55	73.03	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1I6E6	5.8e-54	66.29	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE...	[more]
A0A6J1EVU3	1.3e-50	65.17	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 ...	[more]
A0A6J1DW47	1.4e-47	60.69	RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111024041...	[more]

BLAST of Lsi03G022760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443568.1	6.7e-57	72.44	PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo]	[more]
KAA0044224.1	1.4e-54	73.03	RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa]	[more]
XP_022971293.1	1.2e-53	66.29	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]
XP_023540727.1	3.2e-51	73.79	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930638.1	2.7e-50	65.17	RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 fin...	[more]

BLAST of Lsi03G022760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	2.2e-42	56.83	RING/U-box superfamily protein	[more]
AT5G05280.1	2.0e-38	52.86	RING/U-box superfamily protein	[more]
AT3G10910.1	9.1e-36	51.75	RING/U-box superfamily protein	[more]
AT1G49230.1	5.7e-30	44.78	RING/U-box superfamily protein	[more]
AT1G20823.1	1.6e-24	46.97	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 96..137 e-value: 4.4E-6 score: 36.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 95..138 e-value: 7.0E-13 score: 48.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 96..138 score: 11.648357
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 74..146 e-value: 4.8E-20 score: 72.5
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 6..144
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 6..144
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 91..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G022760.1	Lsi03G022760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane