Lsi03G021550 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G021550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Adenine nucleotide alpha hydrolases-like superfamily protein
Location	chr03: 32696522 .. 32696704 (-)
RNA-Seq Expression	Lsi03G021550
Synteny	Lsi03G021550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGGATCGGAAGATCGGAGTTGCTCTGGATTTCTCCAACAGTAGCAAAAATGCTCTCAAATGGGCCATCGACAACTTAGCCGACAAGGGCGACACTCTCTTCATCATCTATGTTAACACCAACTCACTCAACGAATCTGCCCATCACCTCTGGGCTGAATCCGGTTCTCGTCAGTAA

mRNA sequence

ATGGTGAAGGATCGGAAGATCGGAGTTGCTCTGGATTTCTCCAACAGTAGCAAAAATGCTCTCAAATGGGCCATCGACAACTTAGCCGACAAGGGCGACACTCTCTTCATCATCTATGTTAACACCAACTCACTCAACGAATCTGCCCATCACCTCTGGGCTGAATCCGGTTCTCGTCAGTAA

Coding sequence (CDS)

ATGGTGAAGGATCGGAAGATCGGAGTTGCTCTGGATTTCTCCAACAGTAGCAAAAATGCTCTCAAATGGGCCATCGACAACTTAGCCGACAAGGGCGACACTCTCTTCATCATCTATGTTAACACCAACTCACTCAACGAATCTGCCCATCACCTCTGGGCTGAATCCGGTTCTCGTCAGTAA

Protein sequence

MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGSRQ

Homology

[Close]

BLAST of Lsi03G021550 vs. ExPASy TrEMBL
Match: A0A5A7TSD0 (Universal stress protein PHOS32-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001270 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.2e-22
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVALDFS+SSKNALKWAIDNLADKGDTL+IIYVN NSLNESAH LWAESGS
Sbjct: 1  MVKDRKIGVALDFSDSSKNALKWAIDNLADKGDTLYIIYVNPNSLNESAHRLWAESGS 58

[Close]

BLAST of Lsi03G021550 vs. ExPASy TrEMBL
Match: A0A1S3B5T0 (uncharacterized protein C167.05 OS=Cucumis melo OX=3656 GN=LOC103486344 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.2e-22
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVALDFS+SSKNALKWAIDNLADKGDTL+IIYVN NSLNESAH LWAESGS
Sbjct: 1  MVKDRKIGVALDFSDSSKNALKWAIDNLADKGDTLYIIYVNPNSLNESAHRLWAESGS 58

[Close]

BLAST of Lsi03G021550 vs. ExPASy TrEMBL
Match: A0A0A0LDK3 (Usp domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G733270 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVALDFSNSSKNAL+WAIDNLADKGDTLFIIYVN NSL ESAH LWAESGS
Sbjct: 1  MVKDRKIGVALDFSNSSKNALRWAIDNLADKGDTLFIIYVNPNSLEESAHRLWAESGS 58

[Close]

BLAST of Lsi03G021550 vs. ExPASy TrEMBL
Match: A0A6J1CXB3 (universal stress protein PHOS32 OS=Momordica charantia OX=3673 GN=LOC111015049 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.1e-21
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRK GVALDFSNSSKNAL+WAIDNLADKGDTLF+IYVN NSL+ESAH LWAESGS
Sbjct: 1  MVKDRKFGVALDFSNSSKNALRWAIDNLADKGDTLFVIYVNPNSLDESAHQLWAESGS 58

[Close]

BLAST of Lsi03G021550 vs. ExPASy TrEMBL
Match: A0A6J1FAU1 (universal stress protein PHOS32-like OS=Cucurbita moschata OX=3662 GN=LOC111442383 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.1e-21
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
           MVKDRKIGVALDFS+SSKNAL+WAIDNLADKGDTLFIIYVN NS+NES H LWAESGS
Sbjct: 50  MVKDRKIGVALDFSSSSKNALRWAIDNLADKGDTLFIIYVNPNSVNESPHKLWAESGS 107

[Close]

BLAST of Lsi03G021550 vs. NCBI nr
Match: XP_038903504.1 (universal stress protein PHOS32 [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVALDFSNSSKNAL+WAIDNLADKGDTLFIIYVN NSL+ESAH LWAESGS
Sbjct: 1  MVKDRKIGVALDFSNSSKNALRWAIDNLADKGDTLFIIYVNPNSLDESAHRLWAESGS 58

[Close]

BLAST of Lsi03G021550 vs. NCBI nr
Match: XP_008442491.1 (PREDICTED: uncharacterized protein C167.05 [Cucumis melo] >KAA0044129.1 universal stress protein PHOS32-like [Cucumis melo var. makuwa] >TYK25009.1 universal stress protein PHOS32-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVALDFS+SSKNALKWAIDNLADKGDTL+IIYVN NSLNESAH LWAESGS
Sbjct: 1  MVKDRKIGVALDFSDSSKNALKWAIDNLADKGDTLYIIYVNPNSLNESAHRLWAESGS 58

[Close]

BLAST of Lsi03G021550 vs. NCBI nr
Match: XP_011651876.1 (universal stress protein PHOS32 [Cucumis sativus] >KGN58822.1 hypothetical protein Csa_001140 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVALDFSNSSKNAL+WAIDNLADKGDTLFIIYVN NSL ESAH LWAESGS
Sbjct: 1  MVKDRKIGVALDFSNSSKNALRWAIDNLADKGDTLFIIYVNPNSLEESAHRLWAESGS 58

[Close]

BLAST of Lsi03G021550 vs. NCBI nr
Match: XP_022145652.1 (universal stress protein PHOS32 [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 6.5e-21
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRK GVALDFSNSSKNAL+WAIDNLADKGDTLF+IYVN NSL+ESAH LWAESGS
Sbjct: 1  MVKDRKFGVALDFSNSSKNALRWAIDNLADKGDTLFVIYVNPNSLDESAHQLWAESGS 58

[Close]

BLAST of Lsi03G021550 vs. NCBI nr
Match: XP_022935543.1 (universal stress protein PHOS32-like [Cucurbita moschata])

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
           MVKDRKIGVALDFS+SSKNAL+WAIDNLADKGDTLFIIYVN NS+NES H LWAESGS
Sbjct: 50  MVKDRKIGVALDFSSSSKNALRWAIDNLADKGDTLFIIYVNPNSVNESPHKLWAESGS 107

[Close]

BLAST of Lsi03G021550 vs. TAIR 10
Match: AT3G53990.2 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 8.7e-16
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          M KDR IG+A+DFS SSKNALKWAI+NLADKGDT++II+    S +ES + LW +SGS
Sbjct: 1  MPKDRNIGIAMDFSESSKNALKWAIENLADKGDTIYIIHTLPLSGDESRNSLWFKSGS 58

[Close]

BLAST of Lsi03G021550 vs. TAIR 10
Match: AT3G53990.1 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 8.7e-16
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          M KDR IG+A+DFS SSKNALKWAI+NLADKGDT++II+    S +ES + LW +SGS
Sbjct: 1  MPKDRNIGIAMDFSESSKNALKWAIENLADKGDTIYIIHTLPLSGDESRNSLWFKSGS 58

[Close]

BLAST of Lsi03G021550 vs. TAIR 10
Match: AT3G03270.1 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-07
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          M K R +GV +D+S +SK AL+WA +NL + GDT+ +I+V   + + +   L+ E+GS
Sbjct: 1  MGKARTVGVGMDYSPTSKLALRWAAENLLEDGDTVILIHVQPQNADHTRKILFEETGS 58

[Close]

BLAST of Lsi03G021550 vs. TAIR 10
Match: AT3G03270.2 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-07
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          M K R +GV +D+S +SK AL+WA +NL + GDT+ +I+V   + + +   L+ E+GS
Sbjct: 1  MGKARTVGVGMDYSPTSKLALRWAAENLLEDGDTVILIHVQPQNADHTRKILFEETGS 58

[Close]

BLAST of Lsi03G021550 vs. TAIR 10
Match: AT3G17020.1 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 5.7e-07
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 5  RKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYV-NTNSLNESAHHLWAESGS 59
          R+IGVA+DFS+ SK AL WAIDN+   GD L +I + +  +  E    LW   GS
Sbjct: 7  RRIGVAVDFSDCSKKALSWAIDNVVRDGDHLILITIAHDMNYEEGEMQLWETVGS 61

The following BLAST results are available for this feature:

BLAST of Lsi03G021550 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G021550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSD0	8.2e-22	93.10	Universal stress protein PHOS32-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3B5T0	8.2e-22	93.10	uncharacterized protein C167.05 OS=Cucumis melo OX=3656 GN=LOC103486344 PE=4 SV=...	[more]
A0A0A0LDK3	1.1e-21	93.10	Usp domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G733270 PE=4 SV...	[more]
A0A6J1CXB3	3.1e-21	89.66	universal stress protein PHOS32 OS=Momordica charantia OX=3673 GN=LOC111015049 P...	[more]
A0A6J1FAU1	9.1e-21	89.66	universal stress protein PHOS32-like OS=Cucurbita moschata OX=3662 GN=LOC1114423...	[more]

BLAST of Lsi03G021550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903504.1	1.7e-21	93.10	universal stress protein PHOS32 [Benincasa hispida]	[more]
XP_008442491.1	1.7e-21	93.10	PREDICTED: uncharacterized protein C167.05 [Cucumis melo] >KAA0044129.1 universa...	[more]
XP_011651876.1	2.2e-21	93.10	universal stress protein PHOS32 [Cucumis sativus] >KGN58822.1 hypothetical prote...	[more]
XP_022145652.1	6.5e-21	89.66	universal stress protein PHOS32 [Momordica charantia]	[more]
XP_022935543.1	1.9e-20	89.66	universal stress protein PHOS32-like [Cucurbita moschata]	[more]

BLAST of Lsi03G021550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53990.2	8.7e-16	65.52	Adenine nucleotide alpha hydrolases-like superfamily protein	[more]
AT3G53990.1	8.7e-16	65.52	Adenine nucleotide alpha hydrolases-like superfamily protein	[more]
AT3G03270.1	1.1e-07	41.38	Adenine nucleotide alpha hydrolases-like superfamily protein	[more]
AT3G03270.2	1.1e-07	41.38	Adenine nucleotide alpha hydrolases-like superfamily protein	[more]
AT3G17020.1	5.7e-07	47.27	Adenine nucleotide alpha hydrolases-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006016	UspA	PFAM	PF00582	Usp	coord: 5..55 e-value: 2.0E-9 score: 38.1
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620	HUPs	coord: 3..59 e-value: 6.5E-8 score: 34.8
None	No IPR available	PANTHER	PTHR46100:SF14	SUBFAMILY NOT NAMED	coord: 1..58
None	No IPR available	PANTHER	PTHR46100	IMP2'P	coord: 1..58
None	No IPR available	SUPERFAMILY	52402	Adenine nucleotide alpha hydrolases-like	coord: 5..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G021550.1	Lsi03G021550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0009409	response to cold
biological_process	GO:0009408	response to heat
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0034337	RNA folding
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding