Lsi03G021130 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G021130
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor AS1
Location	chr03: 32359416 .. 32360051 (-)
RNA-Seq Expression	Lsi03G021130
Synteny	Lsi03G021130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTTCCAATGGGGGCTTTCTTCAAACTGATTCCTCCACTCCACCACCATCGTCTCTTCCTCCTTGGCTTTCCAACTCCAACGGTGGCACTTCGCTCCGACCGCCTTCCCCGTCGGTCACCTTAACACTCTCTTCCCCCACAGTTCCAGCCTACTCTCCCATCCCCTGGCTGCAGCAGGCAGAGAGAATGCCAGAAAACATGCCTCTTGTGTTAGGAAATTTAGCACCTCAAATGTCAATGCCATCATGTGGTGGAAGTCTCTTTGCTTCTGAGCTCGTCGAATGCTGTCGAGAGCTCGACGAAGGCCACCGTGCTTGGGCAGCACACAAGAAGGAAACAGCATGGAGGTTAAGGAGACAAGAGTTGCAATTGGAGTCGGAGAAGGCGTCTCGGATTCGACAGAAGATGGAGGAGGTTGAAGGAAAAGTGAAAGCTCTTAGAGAAGAAGAGAAGATTGCTTTGGAGAGGATTGAAGCTGAGTATAAGGAACAACTGGCAGGGTTGAGAAAAGATGCAGAGGCTAAAGAACAAAAGTTGGCTGAGCAATGGGCTGCAAAACATTCGAGCCTTACTAAATTTCTTGAGCATATGGGTTGCAGAACTAGAATTGCTGAGTCCAGTGGGAGGTGA

mRNA sequence

ATGGCTACTTCCAATGGGGGCTTTCTTCAAACTGATTCCTCCACTCCACCACCATCGTCTCTTCCTCCTTGGCTTTCCAACTCCAACGGTGGCACTTCGCTCCGACCGCCTTCCCCGTCGGTCACCTTAACACTCTCTTCCCCCACAGTTCCAGCCTACTCTCCCATCCCCTGGCTGCAGCAGGCAGAGAGAATGCCAGAAAACATGCCTCTTGTGTTAGGAAATTTAGCACCTCAAATGTCAATGCCATCATGTGGTGGAAGTCTCTTTGCTTCTGAGCTCGTCGAATGCTGTCGAGAGCTCGACGAAGGCCACCGTGCTTGGGCAGCACACAAGAAGGAAACAGCATGGAGGTTAAGGAGACAAGAGTTGCAATTGGAGTCGGAGAAGGCGTCTCGGATTCGACAGAAGATGGAGGAGGTTGAAGGAAAAGTGAAAGCTCTTAGAGAAGAAGAGAAGATTGCTTTGGAGAGGATTGAAGCTGAGTATAAGGAACAACTGGCAGGGTTGAGAAAAGATGCAGAGGCTAAAGAACAAAAGTTGGCTGAGCAATGGGCTGCAAAACATTCGAGCCTTACTAAATTTCTTGAGCATATGGGTTGCAGAACTAGAATTGCTGAGTCCAGTGGGAGGTGA

Coding sequence (CDS)

ATGGCTACTTCCAATGGGGGCTTTCTTCAAACTGATTCCTCCACTCCACCACCATCGTCTCTTCCTCCTTGGCTTTCCAACTCCAACGGTGGCACTTCGCTCCGACCGCCTTCCCCGTCGGTCACCTTAACACTCTCTTCCCCCACAGTTCCAGCCTACTCTCCCATCCCCTGGCTGCAGCAGGCAGAGAGAATGCCAGAAAACATGCCTCTTGTGTTAGGAAATTTAGCACCTCAAATGTCAATGCCATCATGTGGTGGAAGTCTCTTTGCTTCTGAGCTCGTCGAATGCTGTCGAGAGCTCGACGAAGGCCACCGTGCTTGGGCAGCACACAAGAAGGAAACAGCATGGAGGTTAAGGAGACAAGAGTTGCAATTGGAGTCGGAGAAGGCGTCTCGGATTCGACAGAAGATGGAGGAGGTTGAAGGAAAAGTGAAAGCTCTTAGAGAAGAAGAGAAGATTGCTTTGGAGAGGATTGAAGCTGAGTATAAGGAACAACTGGCAGGGTTGAGAAAAGATGCAGAGGCTAAAGAACAAAAGTTGGCTGAGCAATGGGCTGCAAAACATTCGAGCCTTACTAAATTTCTTGAGCATATGGGTTGCAGAACTAGAATTGCTGAGTCCAGTGGGAGGTGA

Protein sequence

MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQQAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLRRQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQKLAEQWAAKHSSLTKFLEHMGCRTRIAESSGR

Homology

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BLAST of Lsi03G021130 vs. ExPASy Swiss-Prot
Match: O80931 (Transcription factor AS1 OS=Arabidopsis thaliana OX=3702 GN=AS1 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-57
Identity = 133/213 (62.44%), Postives = 158/213 (74.18%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSS-LPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYS---PI 60
           MA SNGGFL ++    PP+  +PPWL+ SN G ++    PSVTLTLS  TV A +   PI
Sbjct: 156 MANSNGGFLHSEQQVQPPNPVIPPWLATSNNGNNVVARPPSVTLTLSPSTVAAAAPQPPI 215

Query: 61  PWLQQAE-RMPENMP--LVLGNLAPQMSMPSCGG---SLFASELVECCRELDEGHRAWAA 120
           PWLQQ +    EN P  LVLG++     MPSC G   S+F SELVECCREL+EGHRAWA 
Sbjct: 216 PWLQQQQPERAENGPGGLVLGSM-----MPSCSGSSESVFLSELVECCRELEEGHRAWAD 275

Query: 121 HKKETAWRLRRQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGL 180
           HKKE AWRLRR ELQLESEK  R R+KMEE+E K+KALREE+K A+E+IE EY+EQL GL
Sbjct: 276 HKKEAAWRLRRLELQLESEKTCRQREKMEEIEAKMKALREEQKNAMEKIEGEYREQLVGL 335

Query: 181 RKDAEAKEQKLAEQWAAKHSSLTKFLE-HMGCR 203
           R+DAEAK+QKLA+QW ++H  LTKFLE  MGCR
Sbjct: 336 RRDAEAKDQKLADQWTSRHIRLTKFLEQQMGCR 363

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BLAST of Lsi03G021130 vs. ExPASy Swiss-Prot
Match: Q94IB1 (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RS2 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.3e-38
Identity = 94/186 (50.54%), Postives = 124/186 (66.67%), Query Frame = 0


Query: 21  LPPWLSNSNGGTSLRPPSPSVTLTLSSPTV---PAYSPIPWLQQAERMPENMPLVLGNLA 80
           LPPW+S+S   +S    SPSVTL+L+S  V   PA  P  W                   
Sbjct: 165 LPPWMSSSPSSSS----SPSVTLSLASAAVAPAPAAPPPTW------------------- 224

Query: 81  PQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLRRQELQLESEKASRIRQK 140
                   GG +  +EL+ECCRE++EG RAWAAH+KE AWR++R E+QLE+E+A R R+ 
Sbjct: 225 ----GGGGGGEVVVAELMECCREMEEGQRAWAAHRKEAAWRMKRVEMQLETERACRRREA 284

Query: 141 MEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQKLAEQWAAKHSSLTKFLE 200
            EE E K++ALREE+  A+ER+EAEY+E++AGLR+DAEAKEQK+AEQWAAKH+ L KFL+
Sbjct: 285 TEEFEAKMRALREEQAAAVERVEAEYREKMAGLRRDAEAKEQKMAEQWAAKHARLAKFLD 323

Query: 201 HM-GCR 203
            +  CR
Sbjct: 345 QVAACR 323

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BLAST of Lsi03G021130 vs. ExPASy Swiss-Prot
Match: Q9S7B2 (Protein rough sheath 2 OS=Zea mays OX=4577 GN=RS2 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 91/197 (46.19%), Postives = 124/197 (62.94%), Query Frame = 0


Query: 21  LPPWLSNSNGGTSL----------RPPSPSVTLTLSSPTVP--AYSPIPWLQQ---AERM 80
           LPPWLS++ G  +           RPPSPSVTL+L+S  V     +P PW+     A+  
Sbjct: 162 LPPWLSSNAGPAAAAAAAVAHPPPRPPSPSVTLSLASAAVAPGPPAPAPWMPDRAAADAA 221

Query: 81  PENMPLVL--GNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLRRQE 140
           P   P     G  AP       G +L  +EL ECCREL+EG RAWAAH++E AWRL+R E
Sbjct: 222 PYGFPSPSQHGGAAPPGMAVVDGQAL--AELAECCRELEEGRRAWAAHRREAAWRLKRVE 281

Query: 141 LQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQKLAE 200
            QLE E+  R R+  EE E K++ +R E+  A ER+E +++E++A LR+DA+ KE+K+AE
Sbjct: 282 QQLEMEREMRRREVWEEFEAKMRTMRLEQAAAAERVERDHREKVAELRRDAQVKEEKMAE 341

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BLAST of Lsi03G021130 vs. ExPASy TrEMBL
Match: A0A5D3DN74 (Transcription factor AS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001650 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.7e-104
Identity = 203/211 (96.21%), Postives = 207/211 (98.10%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFLQTDSSTPPP SLPPWLSNSNGG+SLRPPSPSVTLTLSSPTVPAY+PIPWLQ
Sbjct: 1   MATSNGGFLQTDSSTPPP-SLPPWLSNSNGGSSLRPPSPSVTLTLSSPTVPAYTPIPWLQ 60

Query: 61  QAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120
           Q +RMPEN+PLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR
Sbjct: 61  QPDRMPENIPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAG RKDAEAKEQK
Sbjct: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGFRKDAEAKEQK 180

Query: 181 LAEQWAAKHSSLTKFLEHMGCRTRIAESSGR 212
           LAEQWAAKH SLTKFLEHMGCRTRIAESSGR
Sbjct: 181 LAEQWAAKHMSLTKFLEHMGCRTRIAESSGR 210

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BLAST of Lsi03G021130 vs. ExPASy TrEMBL
Match: A0A1S3B5G1 (transcription factor AS1 OS=Cucumis melo OX=3656 GN=LOC103486384 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.7e-104
Identity = 203/211 (96.21%), Postives = 207/211 (98.10%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFLQTDSSTPPP SLPPWLSNSNGG+SLRPPSPSVTLTLSSPTVPAY+PIPWLQ
Sbjct: 1   MATSNGGFLQTDSSTPPP-SLPPWLSNSNGGSSLRPPSPSVTLTLSSPTVPAYTPIPWLQ 60

Query: 61  QAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120
           Q +RMPEN+PLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR
Sbjct: 61  QPDRMPENIPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAG RKDAEAKEQK
Sbjct: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGFRKDAEAKEQK 180

Query: 181 LAEQWAAKHSSLTKFLEHMGCRTRIAESSGR 212
           LAEQWAAKH SLTKFLEHMGCRTRIAESSGR
Sbjct: 181 LAEQWAAKHMSLTKFLEHMGCRTRIAESSGR 210

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BLAST of Lsi03G021130 vs. ExPASy TrEMBL
Match: A0A0A0LAJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734210 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.2e-103
Identity = 202/211 (95.73%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFLQTDSST PP SLPPWLSNSNGG+SLRPPSPSVTLTLSSPTVPAY+PIPWLQ
Sbjct: 1   MATSNGGFLQTDSSTSPP-SLPPWLSNSNGGSSLRPPSPSVTLTLSSPTVPAYTPIPWLQ 60

Query: 61  QAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120
           Q +RMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR
Sbjct: 61  QPDRMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           RQELQLESEKASRIR KMEEVEGKVKALREEEKIALERIEAEYKEQLAG RKDAEAKEQK
Sbjct: 121 RQELQLESEKASRIRLKMEEVEGKVKALREEEKIALERIEAEYKEQLAGFRKDAEAKEQK 180

Query: 181 LAEQWAAKHSSLTKFLEHMGCRTRIAESSGR 212
           LAEQWAAKH SLTKFLEHMGCRTRIAESSGR
Sbjct: 181 LAEQWAAKHMSLTKFLEHMGCRTRIAESSGR 210

[Close]

BLAST of Lsi03G021130 vs. ExPASy TrEMBL
Match: A0A6J1J530 (transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111481437 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.8e-101
Identity = 199/211 (94.31%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFLQTDSSTPPP SLPPWLSNSNGG+ LRPPSPSVTLTLSSPTVPAYSPIPWLQ
Sbjct: 1   MATSNGGFLQTDSSTPPP-SLPPWLSNSNGGSLLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60

Query: 61  QAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120
           Q ER+PENMPLVLGNLAP MSM SCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR
Sbjct: 61  QPERIPENMPLVLGNLAPHMSMASCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           RQELQLESEKASRIRQKMEEVEGKVKALREEEK  LERIEAEYKEQLAGLRKDAEAKEQK
Sbjct: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKSGLERIEAEYKEQLAGLRKDAEAKEQK 180

Query: 181 LAEQWAAKHSSLTKFLEHMGCRTRIAESSGR 212
           LA+QWAAKH SLTKFLEHMGCRTRIA+SSGR
Sbjct: 181 LADQWAAKHLSLTKFLEHMGCRTRIADSSGR 210

[Close]

BLAST of Lsi03G021130 vs. ExPASy TrEMBL
Match: A0A6J1I2B9 (transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111470250 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.8e-101
Identity = 197/211 (93.36%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFLQTDSSTPPP SLPPWLSNSN  +SLRPPSPSVTLTLSSPTVPAYSPIPWLQ
Sbjct: 1   MATSNGGFLQTDSSTPPP-SLPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60

Query: 61  QAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120
           Q ER+PE MPLVLGN+APQM+MPSCGGSLFASELVECCRELDEGHRAWA+HKKETAWRLR
Sbjct: 61  QPERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLR 120

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           RQELQLESEKASRIRQKMEEVEGKVKA+REEEKIALERIEAEYKEQLAGLRKDAEAKEQK
Sbjct: 121 RQELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180

Query: 181 LAEQWAAKHSSLTKFLEHMGCRTRIAESSGR 212
           LAEQWAAKH SLTKFLEHMGCRT+I+ESSGR
Sbjct: 181 LAEQWAAKHLSLTKFLEHMGCRTKISESSGR 210

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BLAST of Lsi03G021130 vs. NCBI nr
Match: XP_038903104.1 (transcription factor AS1-like [Benincasa hispida] >XP_038903105.1 transcription factor AS1-like [Benincasa hispida])

HSP 1 Score: 389.4 bits (999), Expect = 1.9e-104
Identity = 205/211 (97.16%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFLQTDSSTPPP SLPPWLSNSNGG+SLRPPSPSVTLTLSSPTVPAYSPIPWLQ
Sbjct: 1   MATSNGGFLQTDSSTPPP-SLPPWLSNSNGGSSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60

Query: 61  QAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120
           Q ER+PENMPLVLGNLAPQMSMPSCGGSLFASELVECCREL+EGHRAWAAHKKETAWRLR
Sbjct: 61  QPERIPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELNEGHRAWAAHKKETAWRLR 120

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK
Sbjct: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180

Query: 181 LAEQWAAKHSSLTKFLEHMGCRTRIAESSGR 212
           LAEQWAAKH SLTKFLEHMGCRTRIAESSGR
Sbjct: 181 LAEQWAAKHLSLTKFLEHMGCRTRIAESSGR 210

[Close]

BLAST of Lsi03G021130 vs. NCBI nr
Match: XP_008442545.1 (PREDICTED: transcription factor AS1 [Cucumis melo] >KAA0044093.1 transcription factor AS1 [Cucumis melo var. makuwa] >TYK25044.1 transcription factor AS1 [Cucumis melo var. makuwa])

HSP 1 Score: 387.9 bits (995), Expect = 5.6e-104
Identity = 203/211 (96.21%), Postives = 207/211 (98.10%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFLQTDSSTPPP SLPPWLSNSNGG+SLRPPSPSVTLTLSSPTVPAY+PIPWLQ
Sbjct: 1   MATSNGGFLQTDSSTPPP-SLPPWLSNSNGGSSLRPPSPSVTLTLSSPTVPAYTPIPWLQ 60

Query: 61  QAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120
           Q +RMPEN+PLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR
Sbjct: 61  QPDRMPENIPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAG RKDAEAKEQK
Sbjct: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGFRKDAEAKEQK 180

Query: 181 LAEQWAAKHSSLTKFLEHMGCRTRIAESSGR 212
           LAEQWAAKH SLTKFLEHMGCRTRIAESSGR
Sbjct: 181 LAEQWAAKHMSLTKFLEHMGCRTRIAESSGR 210

[Close]

BLAST of Lsi03G021130 vs. NCBI nr
Match: XP_004137788.1 (transcription factor AS1 [Cucumis sativus] >KGN58868.1 hypothetical protein Csa_001688 [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 1.1e-102
Identity = 202/211 (95.73%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFLQTDSST PP SLPPWLSNSNGG+SLRPPSPSVTLTLSSPTVPAY+PIPWLQ
Sbjct: 1   MATSNGGFLQTDSSTSPP-SLPPWLSNSNGGSSLRPPSPSVTLTLSSPTVPAYTPIPWLQ 60

Query: 61  QAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120
           Q +RMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR
Sbjct: 61  QPDRMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           RQELQLESEKASRIR KMEEVEGKVKALREEEKIALERIEAEYKEQLAG RKDAEAKEQK
Sbjct: 121 RQELQLESEKASRIRLKMEEVEGKVKALREEEKIALERIEAEYKEQLAGFRKDAEAKEQK 180

Query: 181 LAEQWAAKHSSLTKFLEHMGCRTRIAESSGR 212
           LAEQWAAKH SLTKFLEHMGCRTRIAESSGR
Sbjct: 181 LAEQWAAKHMSLTKFLEHMGCRTRIAESSGR 210

[Close]

BLAST of Lsi03G021130 vs. NCBI nr
Match: XP_022982614.1 (transcription factor AS1-like [Cucurbita maxima] >XP_022982615.1 transcription factor AS1-like [Cucurbita maxima])

HSP 1 Score: 377.9 bits (969), Expect = 5.8e-101
Identity = 199/211 (94.31%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFLQTDSSTPPP SLPPWLSNSNGG+ LRPPSPSVTLTLSSPTVPAYSPIPWLQ
Sbjct: 1   MATSNGGFLQTDSSTPPP-SLPPWLSNSNGGSLLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60

Query: 61  QAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120
           Q ER+PENMPLVLGNLAP MSM SCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR
Sbjct: 61  QPERIPENMPLVLGNLAPHMSMASCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           RQELQLESEKASRIRQKMEEVEGKVKALREEEK  LERIEAEYKEQLAGLRKDAEAKEQK
Sbjct: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKSGLERIEAEYKEQLAGLRKDAEAKEQK 180

Query: 181 LAEQWAAKHSSLTKFLEHMGCRTRIAESSGR 212
           LA+QWAAKH SLTKFLEHMGCRTRIA+SSGR
Sbjct: 181 LADQWAAKHLSLTKFLEHMGCRTRIADSSGR 210

[Close]

BLAST of Lsi03G021130 vs. NCBI nr
Match: KAG6596407.1 (E3 ubiquitin-protein ligase PRT6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377.9 bits (969), Expect = 5.8e-101
Identity = 197/211 (93.36%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSSLPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60
           MATSNGGFLQTDSSTPPP SLPPWLSNSN  +SLRPPSPSVTLTLSSPTVPAYSPIPWLQ
Sbjct: 1   MATSNGGFLQTDSSTPPP-SLPPWLSNSNSSSSLRPPSPSVTLTLSSPTVPAYSPIPWLQ 60

Query: 61  QAERMPENMPLVLGNLAPQMSMPSCGGSLFASELVECCRELDEGHRAWAAHKKETAWRLR 120
           Q ER+PE MPLVLGN+APQM+MPSCGGSLFASELVECCRELDEGHRAWA+HKKETAWRLR
Sbjct: 61  QPERIPETMPLVLGNIAPQMTMPSCGGSLFASELVECCRELDEGHRAWASHKKETAWRLR 120

Query: 121 RQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180
           RQELQLESEKASRIRQKMEEVEGKVKA+REEEKIALERIEAEYKEQLAGLRKDAEAKEQK
Sbjct: 121 RQELQLESEKASRIRQKMEEVEGKVKAVREEEKIALERIEAEYKEQLAGLRKDAEAKEQK 180

Query: 181 LAEQWAAKHSSLTKFLEHMGCRTRIAESSGR 212
           LAEQWAAKH SLTKFLEHMGCRT+I+ESSGR
Sbjct: 181 LAEQWAAKHLSLTKFLEHMGCRTKISESSGR 210

[Close]

BLAST of Lsi03G021130 vs. TAIR 10
Match: AT2G37630.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 224.2 bits (570), Expect = 1.0e-58
Identity = 133/213 (62.44%), Postives = 158/213 (74.18%), Query Frame = 0


Query: 1   MATSNGGFLQTDSSTPPPSS-LPPWLSNSNGGTSLRPPSPSVTLTLSSPTVPAYS---PI 60
           MA SNGGFL ++    PP+  +PPWL+ SN G ++    PSVTLTLS  TV A +   PI
Sbjct: 156 MANSNGGFLHSEQQVQPPNPVIPPWLATSNNGNNVVARPPSVTLTLSPSTVAAAAPQPPI 215

Query: 61  PWLQQAE-RMPENMP--LVLGNLAPQMSMPSCGG---SLFASELVECCRELDEGHRAWAA 120
           PWLQQ +    EN P  LVLG++     MPSC G   S+F SELVECCREL+EGHRAWA 
Sbjct: 216 PWLQQQQPERAENGPGGLVLGSM-----MPSCSGSSESVFLSELVECCRELEEGHRAWAD 275

Query: 121 HKKETAWRLRRQELQLESEKASRIRQKMEEVEGKVKALREEEKIALERIEAEYKEQLAGL 180
           HKKE AWRLRR ELQLESEK  R R+KMEE+E K+KALREE+K A+E+IE EY+EQL GL
Sbjct: 276 HKKEAAWRLRRLELQLESEKTCRQREKMEEIEAKMKALREEQKNAMEKIEGEYREQLVGL 335

Query: 181 RKDAEAKEQKLAEQWAAKHSSLTKFLE-HMGCR 203
           R+DAEAK+QKLA+QW ++H  LTKFLE  MGCR
Sbjct: 336 RRDAEAKDQKLADQWTSRHIRLTKFLEQQMGCR 363

The following BLAST results are available for this feature:

BLAST of Lsi03G021130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80931	1.4e-57	62.44	Transcription factor AS1 OS=Arabidopsis thaliana OX=3702 GN=AS1 PE=1 SV=1	[more]
Q94IB1	7.3e-38	50.54	Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RS2 P...	[more]
Q9S7B2	1.1e-33	46.19	Protein rough sheath 2 OS=Zea mays OX=4577 GN=RS2 PE=1 SV=1	[more]

BLAST of Lsi03G021130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DN74	2.7e-104	96.21	Transcription factor AS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B5G1	2.7e-104	96.21	transcription factor AS1 OS=Cucumis melo OX=3656 GN=LOC103486384 PE=4 SV=1	[more]
A0A0A0LAJ9	5.2e-103	95.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734210 PE=4 SV=1	[more]
A0A6J1J530	2.8e-101	94.31	transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111481437 PE=4 S...	[more]
A0A6J1I2B9	2.8e-101	93.36	transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111470250 PE=4 S...	[more]

BLAST of Lsi03G021130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903104.1	1.9e-104	97.16	transcription factor AS1-like [Benincasa hispida] >XP_038903105.1 transcription ...	[more]
XP_008442545.1	5.6e-104	96.21	PREDICTED: transcription factor AS1 [Cucumis melo] >KAA0044093.1 transcription f...	[more]
XP_004137788.1	1.1e-102	95.73	transcription factor AS1 [Cucumis sativus] >KGN58868.1 hypothetical protein Csa_...	[more]
XP_022982614.1	5.8e-101	94.31	transcription factor AS1-like [Cucurbita maxima] >XP_022982615.1 transcription f...	[more]
KAG6596407.1	5.8e-101	93.36	E3 ubiquitin-protein ligase PRT6, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Lsi03G021130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37630.1	1.0e-58	62.44	myb-like HTH transcriptional regulator family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 121..158
None	No IPR available	COILS	Coil	Coil	coord: 160..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR47214	PROTEIN ROUGH SHEATH 2 HOMOLOG	coord: 19..211
IPR031055	Protein rough sheath 2 /ASYMMETRIC LEAVES1	PANTHER	PTHR47214:SF3	TRANSCRIPTION FACTOR AS1	coord: 19..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G021130.1	Lsi03G021130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010338	leaf formation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus