Lsi03G021070 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G021070
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein Mpv17
Location	chr03: 32300925 .. 32304504 (+)
RNA-Seq Expression	Lsi03G021070
Synteny	Lsi03G021070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTTCATTCTCTCTTCCAAAGACTTTTCACAAAAGTAACAATTTCATTTATTATTTACTTTCTCTCCCACTTTTTCCTTTTTCCAATTTTTCCAATTCTCTCTCATCTCATCCATTCTCCTCTATCTTCTTTCCCCCTTTTTTAGCACGACCATCACAAGTGAGTTTCAGAATTTATCCTTTTTTCTTTTTTTCTTTTTCTCCTCTTAGCTTTTTGTTTCTTTCATTTCTTCTTGTTTGTCAGTGAATCTTCTTCATTTATAAACTTCTCAGTACATATTATTTATTTCCTTTTTCATATTTCTTCTCACTTATTCTTTCTTCTTTTTTTTTGTTCGAGGGCCGACCAATGAAGACCGATACATCAGTAGTCGGTGCCAGTTTGAGACTAAAATCGACTATCAACTGACCGATGATCACCCGTATTTTTTATTTTATAGGTGGATGGTACTTCTCTTCTTCCATATTTTTTACTTTTTTATTTTGTAGGTGAATGACAGAAAATCGACAGAAACTGTAGGAGGTTCGTCGCTAGGTGCTGGTACAGCTTGGAGTTTGCCTGAGACCGCGAGCTTGAAATTTATAGAATGTTTAAAAATATGAAATTGAATAGTATTTTCTCTTTTTTCTATATTTTCTCCATTCTCAATCTGTCGATTTCTACTTTCTTTCCTTCCTTTTTTTTTACTGTGCATTTATAGCGGACTGTTGAGTTTTAAAAATAGCATGACCTTTAAAAAAAATGGTTGAGAGCAGGGGAAGAAAATGTGGAACGAGGAGAAAGGAGAAAGATTTTACTTTTTTAATTTTTGAATTTATATTTAAATTAATTAAAAAACAAGGAAAATTGTTTTGAATAAAAAATAATCAAACAATAAACTTTTGGTCATTTTGCTATATTTGTAAATATTTTTATTATTTTATTATTTATAAAAAAAATCCCAAAAAAAAAATTATTTTTTATTTTAAGCTCCTTTAAATTTATTAACAAAACCTTTTTGTAAAATTGTTTTTATTCCTTTTATGCTCTTTTAAAAAAAAACATTTCAATTTCAAAATTTAATTGATAATTAAAGTTATCAAAACTAAAAATAAAATTAAACCTAATTTTAAAATTGTGCCGACGATAGATACAAAGATCATACTTCACATTGTTTTTTTTTTATTATTATTATTATTTTTTTTATTTTTGTTTGCTAACTCACCTAAATTTTAATTTCAATTTAATATAACATGGGTCTTTTTAAAATTTTATTAAAATTACAAGGATGAAATGAAATAATCATTAAAATATAGAAACTAAAATGAATATTTTTAACGTAAATTTAATCCGTGACCCCCACCAACCCAAATTTTGTAAGATAGTTCTGGCCAACCATATATTGGCCTACAAAAGGAGACACACTTTGCTTAGTACATTCCCTTAATCGGTGAAAGCTATGAAGGCTTTGCTTAGTACACAAAAAAAACACATGCGTTGTCGCCGCAGAAGCTTTATCTGTGATGGTTAATTAATTTGCTCCATCGTCTCATTTAGGCGCTTTCTCTTTCCGGCATGGACGTTTTGGGCGGAGGCAATGGCGGCCTCTGGGGCTGGAACTTCCTCCTTCCCGATTTCAAAACTTCTCGAAACAAGAAGAGAAGATTCGAGCCCAAATCCTCTAATTCCTTGCAGGCAACTGGTGGATCTGCTTACCGTTTCCCTATAAAGCAGTACTCGACGGCCGGCTGTCTCACTCTTACCGGCGACATTATTGCTCAGTCCATAAGCCGATGGCGTAAGGGAATCGCTTTGAATTCCACTTCTCTTTCTGATTCTGCCTCTGTCAACAAGGTTAGTTTCCGTCTCTTTGATTCTGACCTCAATTAATTAATTTCCAGTAATTTTGAAATTGGAATTGTTCTGTAATCGGTGACTTAGGGCATGGCTGTTTCTTTGTTCTTATTTCGTAATGTACATGTTTATGGCCCGCTCAAGTTTTCTGGGCCAACACTTCCAATTTTACCTGCTTGAACTTCAACATGCCAATTCTCTTGCATTCAACTGTAGAATTGTTGTCTACAGTGGATAATTTTTTTAGGGCATTTGCTCTGTGCATGCTGAATCTACCGCTTCTGGCCTACAATGCTTCTATTTAAAACCTCATTGATGCATTTCTGATGTGGTCTTTAACTAAGTTTTTTGGATCAAAACTCTCTTTTCAGATGAACATATTTTCAGAACATGATTGGGTTCGGTCTTTGCGGATGGCTTCTTATGGGTTCCTACTTTATGGTCCGGGATCCTATGCATGGTACAACTATCTTGATCACGTTTTGCCCACGAAATCGGTGGAGAACCTTATTCTTAAGGTACCACTGGTTGTGAGTTTGGTGTTAATAATTCTTAGCTCTTAGCTCTTCGCAGCTGAAGTTGAGGATCAAGCATACATAACAGTTCTATGAACTTTTTTCTTAATTGATTTTACTTCAGGTTATCTTGAACCAAATTGTTCTTGGTCCAAGCGTTATTGGTGTTGTATTTGCATGGAACAGTCTCTGGCTAGGAAAAATCTCCCAGCTTCCTGACATGTATCGAAAAGATGCTCTTCCTACATTCTCATTTGGTAAGAAAACGTCTCTGGCTAGGGCCTTTTGTTGCCTCAAAGACACAAGTGTAATGAAATTACTTTTTGATCTCTTTGCAGGGGTTAGGTTCTGGATTCCTGTCAGCATATTGAATTTTTGGTAATTGTTCATATTTAGTTACCCTCTGTGGGTTCTCTTCCAATTACTCAATAAACCTTCTTTTTTTAAAAAAAAAATAAAAAATGGCCAACCTTTCATGAGGTTGAATGAAAGAACAATCAAGGAACATATGAAGCCACTTAAGATGTTGTATTTCGCAACAGGGCCTTTAGTCAGTTACAGTGTCCTGAATTTTGTTGATATAGTTAAACCTGTAGTTAATGAGTCAAAACACTTGTAACACAATATCATCTTTTACTCTACAATGTTTCTCCATCTTTGAACCACAAAATTTTGTATCTGATCTTGTTCCAATGTGCCCGATGAATCTGGTATATGTTTTATTCTCATGAAGAGTAGAAACTTAAGGATTTGAGAGCCAACCTTCTCTGTTTATAACTCTTGCAACTGCATATTCGTATTTTGAATTAGGGATTAGTGACTAAGGACATTATCCAGAATTTGACTGAACCATTTGTGTCATCTTACAGGGTTGTGCCTCTCCAAGCCCAGGTGGCATTCATGTCTGTGGCCTCTATATTTTGGAACTTCTATTTGTCTTCAACCATGAGTAAGTGATTCAATCTAGGAATTTTAATAAGTTGTCATTTATCATCTGTAGTTCTATTTATGGACTCGATTCTCAGTATGGAGAAGAGTTGTGGTAGATCAGAAACACATTAAATGGCAAATGCTATTATTTGCAACTGCTTTTGCATTTAATGGATTGTGCTTCAGATCTACTAAACAGAATTTTGATTTCCAAGTGTAGAAACAATTGCTTTGCTTTTCAAGTTCTGTGTTGGTACTCCAATTGGGTGGCATTTTCAATCTATCAGCTTCAACACTAA

mRNA sequence

ATTTTTTCATTCTCTCTTCCAAAGACTTTTCACAAAAGTAACAATTTCATTTATTATTTACTTTCTCTCCCACTTTTTCCTTTTTCCAATTTTTCCAATTCTCTCTCATCTCATCCATTCTCCTCTATCTTCTTTCCCCCTTTTTTAGCACGACCATCACAAGGCCGACCAATGAAGACCGATACATCAGTAGTCGGTGCCAGTTTGAGACTAAAATCGACTATCAACTGACCGATGATCACCCGTATTTTTTATTTTATAGGCGCTTTCTCTTTCCGGCATGGACGTTTTGGGCGGAGGCAATGGCGGCCTCTGGGGCTGGAACTTCCTCCTTCCCGATTTCAAAACTTCTCGAAACAAGAAGAGAAGATTCGAGCCCAAATCCTCTAATTCCTTGCAGGCAACTGGTGGATCTGCTTACCGTTTCCCTATAAAGCAGTACTCGACGGCCGGCTGTCTCACTCTTACCGGCGACATTATTGCTCAGTCCATAAGCCGATGGCGTAAGGGAATCGCTTTGAATTCCACTTCTCTTTCTGATTCTGCCTCTGTCAACAAGATGAACATATTTTCAGAACATGATTGGGTTCGGTCTTTGCGGATGGCTTCTTATGGGTTCCTACTTTATGGTCCGGGATCCTATGCATGGTACAACTATCTTGATCACGTTTTGCCCACGAAATCGGTGGAGAACCTTATTCTTAAGCTCTTCGCAGCTGAAGTTGAGGATCAAGCATACATAACAGTTATCTTGAACCAAATTGTTCTTGGTCCAAGCGTTATTGGTGTTGTATTTGCATGGAACAGTCTCTGGCTAGGAAAAATCTCCCAGCTTCCTGACATGTATCGAAAAGATGCTCTTCCTACATTCTCATTTGGTAAGAAAACGTCTCTGGCTAGGGCCTTTTGTTGCCTCAAAGACACAAGTGTAATGAAATTACTTTTTGATCTCTTTGCAGGGGTTAGGTTCTGGATTCCTGTCAGCATATTGAATTTTTGGGTTGTGCCTCTCCAAGCCCAGGTGGCATTCATGTCTGTGGCCTCTATATTTTGGAACTTCTATTTGTCTTCAACCATGAGTAAGTGATTCAATCTAGGAATTTTAATAAGTTGTCATTTATCATCTGTAGTTCTATTTATGGACTCGATTCTCAGTATGGAGAAGAGTTGTGGTAGATCAGAAACACATTAAATGGCAAATGCTATTATTTGCAACTGCTTTTGCATTTAATGGATTGTGCTTCAGATCTACTAAACAGAATTTTGATTTCCAAGTGTAGAAACAATTGCTTTGCTTTTCAAGTTCTGTGTTGGTACTCCAATTGGGTGGCATTTTCAATCTATCAGCTTCAACACTAA

Coding sequence (CDS)

ATGGACGTTTTGGGCGGAGGCAATGGCGGCCTCTGGGGCTGGAACTTCCTCCTTCCCGATTTCAAAACTTCTCGAAACAAGAAGAGAAGATTCGAGCCCAAATCCTCTAATTCCTTGCAGGCAACTGGTGGATCTGCTTACCGTTTCCCTATAAAGCAGTACTCGACGGCCGGCTGTCTCACTCTTACCGGCGACATTATTGCTCAGTCCATAAGCCGATGGCGTAAGGGAATCGCTTTGAATTCCACTTCTCTTTCTGATTCTGCCTCTGTCAACAAGATGAACATATTTTCAGAACATGATTGGGTTCGGTCTTTGCGGATGGCTTCTTATGGGTTCCTACTTTATGGTCCGGGATCCTATGCATGGTACAACTATCTTGATCACGTTTTGCCCACGAAATCGGTGGAGAACCTTATTCTTAAGCTCTTCGCAGCTGAAGTTGAGGATCAAGCATACATAACAGTTATCTTGAACCAAATTGTTCTTGGTCCAAGCGTTATTGGTGTTGTATTTGCATGGAACAGTCTCTGGCTAGGAAAAATCTCCCAGCTTCCTGACATGTATCGAAAAGATGCTCTTCCTACATTCTCATTTGGTAAGAAAACGTCTCTGGCTAGGGCCTTTTGTTGCCTCAAAGACACAAGTGTAATGAAATTACTTTTTGATCTCTTTGCAGGGGTTAGGTTCTGGATTCCTGTCAGCATATTGAATTTTTGGGTTGTGCCTCTCCAAGCCCAGGTGGCATTCATGTCTGTGGCCTCTATATTTTGGAACTTCTATTTGTCTTCAACCATGAGTAAGTGA

Protein sequence

MDVLGGGNGGLWGWNFLLPDFKTSRNKKRRFEPKSSNSLQATGGSAYRFPIKQYSTAGCLTLTGDIIAQSISRWRKGIALNSTSLSDSASVNKMNIFSEHDWVRSLRMASYGFLLYGPGSYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNSLWLGKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSILNFWVVPLQAQVAFMSVASIFWNFYLSSTMSK

Homology

[Close]

BLAST of Lsi03G021070 vs. ExPASy Swiss-Prot
Match: Q4P9K6 (Protein SYM1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=SYM1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 53/216 (24.54%), Postives = 82/216 (37.96%), Query Frame = 0


Query: 49  FPIKQYSTAGCLTLTGDIIAQSISRWRKGIALNSTSLSDSASVNKMNIFSEHDWVRSLRM 108
           FP +Q  T G L  TGD IAQ +   R                      S HD  R+ R+
Sbjct: 15  FP-RQCLTGGVLFATGDTIAQQLVEKRG---------------------SRHDLARTFRL 74

Query: 109 ASYGFLLYGPGSYAWY-NYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSV 168
           + YG  ++ P +  W+   L+ V  +    N+  K             V L+Q +  P+ 
Sbjct: 75  SLYGGCVFSPLASIWFGRVLERVRFSSKAANIATK-------------VALDQAIASPAF 134

Query: 169 IGVVFAWNSLWLGKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAG 228
           + + F   ++  G     PD  +   +  +    KT+                       
Sbjct: 135 VALFFGATTIMEG---GSPDQAKNKIIHNWWPTLKTAWG--------------------- 169

Query: 229 VRFWIPVSILNFWVVPLQAQVAFMSVASIFWNFYLS 264
              WIPV  LN  +VP   ++ F++V SIFWN +LS
Sbjct: 195 --LWIPVQTLNMALVPPSQRLLFVNVVSIFWNTFLS 169

[Close]

BLAST of Lsi03G021070 vs. ExPASy Swiss-Prot
Match: Q54FR4 (PXMP2/4 family protein 4 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.9e-05
Identity = 42/170 (24.71%), Postives = 73/170 (42.94%), Query Frame = 0


Query: 99  EHDWVRSLRMASYGFLLYGPGSYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVIL 158
           ++D+ RS+RMA +GF + GP  + W+ YLD   P KS  +             A+I + +
Sbjct: 54  KYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRH-------------AFIKLTI 113

Query: 159 NQIVLGPSVIGVVFAWNSLWLGKI-SQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSV 218
           +Q+V  P    + F+   +  GK    + +  +KD L T+              + D  V
Sbjct: 114 DQVVCSPVFNFLFFSGMGILEGKSKDDIVEKLKKDWLTTY--------------VSDCVV 173

Query: 219 MKLLFDLFAGVRFWIPVSILNFWVVPLQAQVAFMSVASIFWNFYLSSTMS 268
                        W  ++ +NF  +    +V FM+V +I W  +L+   S
Sbjct: 174 -------------WPFINFVNFAYISSIHRVTFMNVCNIGWGAFLAKMNS 183

[Close]

BLAST of Lsi03G021070 vs. ExPASy Swiss-Prot
Match: Q5BK62 (Protein Mpv17 OS=Rattus norvegicus OX=10116 GN=Mpv17 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.3e-04
Identity = 54/211 (25.59%), Postives = 80/211 (37.91%), Query Frame = 0


Query: 53  QYSTAGCLTLTGDIIAQSISRWRKGIALNSTSLSDSASVNKMNIFSEHDWVRSLRMASYG 112
           Q  TAG L   GDII+Q +   R+G+                    +H   R+L MAS G
Sbjct: 19  QVLTAGSLMGLGDIISQQLVE-RRGL-------------------QQHQTGRTLTMASLG 78

Query: 113 FLLYGPGSYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVF 172
               GP    WY  LDH++P  +  N + K+             +L+Q    P  +G   
Sbjct: 79  CGFVGPVVGGWYRVLDHLIPGTTKVNALKKM-------------LLDQGGFAPCFLG--- 138

Query: 173 AWNSLWLGKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWI 232
                +L  +  L  M  +D            L R +    D         L      W 
Sbjct: 139 ----CFLPLVGVLNGMSAQD--------NWAKLKRDY---PDA--------LITNYYLWP 170

Query: 233 PVSILNFWVVPLQAQVAFMSVASIFWNFYLS 264
            V + NF++VPL  ++A +   ++ WN YLS
Sbjct: 199 AVQLANFYLVPLHYRLAVVQCVAVVWNSYLS 170

[Close]

BLAST of Lsi03G021070 vs. ExPASy TrEMBL
Match: A0A1S3BLI4 (protein sym-1 OS=Cucumis melo OX=3656 GN=LOC103491365 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.9e-103
Identity = 200/269 (74.35%), Postives = 213/269 (79.18%), Query Frame = 0


Query: 1   MDVLGGGNGGLWGWNFLLPDFKTSRNKKRR-FEPKSSNSLQATGGSAYRFPIKQYSTAGC 60
           MD L GGNGGLWGWNFLLP  K+SRN KRR FEPKSSNSL+ATGGS +RFPIKQY TAGC
Sbjct: 1   MDALSGGNGGLWGWNFLLPHSKSSRNNKRRSFEPKSSNSLEATGGSGFRFPIKQYVTAGC 60

Query: 61  LTLTGDIIAQSISRWRKGIALNSTSLSDSASVNKMNIFSEHDWVRSLRMASYGFLLYGPG 120
           LTL+GD IAQ  SR+RKGIALNSTSLSDSAS +KMNIF EHDW+RSLRMASYGFLLYGPG
Sbjct: 61  LTLSGDTIAQFFSRYRKGIALNSTSLSDSASADKMNIFLEHDWIRSLRMASYGFLLYGPG 120

Query: 121 SYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNSLWL 180
           S+AWYNYLDHVLP KSVENLILK             VILNQIVLGP+VIGVVFAWNSLWL
Sbjct: 121 SFAWYNYLDHVLPKKSVENLILK-------------VILNQIVLGPAVIGVVFAWNSLWL 180

Query: 181 GKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSILNF 240
           GK+SQLP+MYRKDALPT S+                           GVRFWIPVSILNF
Sbjct: 181 GKLSQLPEMYRKDALPTLSY---------------------------GVRFWIPVSILNF 229

Query: 241 WVVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           WVVPLQ +VAFMSVASIFWNFYLSSTMSK
Sbjct: 241 WVVPLQGRVAFMSVASIFWNFYLSSTMSK 229

[Close]

BLAST of Lsi03G021070 vs. ExPASy TrEMBL
Match: A0A0A0KEM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421720 PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.6e-101
Identity = 195/269 (72.49%), Postives = 211/269 (78.44%), Query Frame = 0


Query: 1   MDVLGGGNGGLWGWNFLLPDFKTSRNKKRR-FEPKSSNSLQATGGSAYRFPIKQYSTAGC 60
           MD   GGNGGLW WNFLL   K+SRN KRR FEPKSSNSL+ATGGS +RFP+KQY TAGC
Sbjct: 1   MDAFSGGNGGLWAWNFLLSHSKSSRNNKRRSFEPKSSNSLEATGGSGFRFPLKQYITAGC 60

Query: 61  LTLTGDIIAQSISRWRKGIALNSTSLSDSASVNKMNIFSEHDWVRSLRMASYGFLLYGPG 120
           LTL+GD IAQ I R+RKGIALNST+LSDSAS +KMNIFSEHDW+RSLRMASYGFLLYGPG
Sbjct: 61  LTLSGDTIAQFIGRYRKGIALNSTALSDSASADKMNIFSEHDWIRSLRMASYGFLLYGPG 120

Query: 121 SYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNSLWL 180
           S+AWYNYLDHVLP KSVENLILK             V+LNQIVLGP+VIGVVFAWNSLWL
Sbjct: 121 SFAWYNYLDHVLPKKSVENLILK-------------VVLNQIVLGPAVIGVVFAWNSLWL 180

Query: 181 GKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSILNF 240
           GK+SQLP+MYRKDALPT S+                           GVRFWIPVSILNF
Sbjct: 181 GKLSQLPEMYRKDALPTLSY---------------------------GVRFWIPVSILNF 229

Query: 241 WVVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           WVVPLQ +VAFMSVASIFWNFYLSSTMSK
Sbjct: 241 WVVPLQGRVAFMSVASIFWNFYLSSTMSK 229

[Close]

BLAST of Lsi03G021070 vs. ExPASy TrEMBL
Match: A0A6J1D1H6 (protein Mpv17 OS=Momordica charantia OX=3673 GN=LOC111016738 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.2e-93
Identity = 184/272 (67.65%), Postives = 206/272 (75.74%), Query Frame = 0


Query: 1   MDVLGGG-NGGLWGWNFLLPDFKTSRNKKRRFEPKSSNSLQATGGSAYRFPIKQYSTAGC 60
           MD+LGGG +GGLWGWNFLLPD KTSRNK+RRFEPKSSNSL+AT GS +RFP+KQ   AGC
Sbjct: 1   MDLLGGGSHGGLWGWNFLLPDPKTSRNKRRRFEPKSSNSLEATPGSGFRFPLKQSLIAGC 60

Query: 61  LTLTGDIIAQSISRWRKGIALNSTSLSDSASVNK---MNIFSEHDWVRSLRMASYGFLLY 120
           L+L+GD IAQ I RWRKGIALNSTSLS+SAS+++    NIFSEHDW+R+LRM SYGFLLY
Sbjct: 61  LSLSGDTIAQFIGRWRKGIALNSTSLSNSASLSRDGFSNIFSEHDWIRALRMLSYGFLLY 120

Query: 121 GPGSYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNS 180
           GPGS+AWYNYLDH LP +SVENL+LK             V+LNQ+VLGP VI VVFAWN+
Sbjct: 121 GPGSFAWYNYLDHALPKRSVENLMLK-------------VLLNQVVLGPCVIAVVFAWNN 180

Query: 181 LWLGKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSI 240
           +WLGKISQLPD YRKDALPT                           L  G RFWIPV I
Sbjct: 181 IWLGKISQLPDKYRKDALPT---------------------------LLYGFRFWIPVXI 232

Query: 241 LNFWVVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           LNFW VPLQA+V FMSVASIFWNFYLSSTMSK
Sbjct: 241 LNFWAVPLQARVPFMSVASIFWNFYLSSTMSK 232

[Close]

BLAST of Lsi03G021070 vs. ExPASy TrEMBL
Match: A0A6J1EWS4 (protein Mpv17 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437238 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.6e-91
Identity = 181/269 (67.29%), Postives = 199/269 (73.98%), Query Frame = 0


Query: 1   MDVLGGGNGGLWGWNFLLPDFKTSRNKKRRFEPKSSNSLQATGGSAYRFPIKQYSTAGCL 60
           MD+LGGG+GGLWGWNF LPD  TSRNK+R FE KSSNSLQATGGS Y+FP+KQ  TAGCL
Sbjct: 1   MDLLGGGHGGLWGWNFFLPDSNTSRNKRRSFEAKSSNSLQATGGSGYQFPLKQSLTAGCL 60

Query: 61  TLTGDIIAQSISRWRKGIALNSTSL-SDSASVNKMNIFSEHDWVRSLRMASYGFLLYGPG 120
           TL+GD IAQ + RWRK IALNS+SL  D  S    NIFSEHDW+RSLRM SYG L+YGPG
Sbjct: 61  TLSGDTIAQLVGRWRKEIALNSSSLEKDGVS----NIFSEHDWIRSLRMLSYGILIYGPG 120

Query: 121 SYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNSLWL 180
           S+AWYNYLDHV+P +SV NL+LK             V+LNQIVLGP VIG VFAWN++WL
Sbjct: 121 SFAWYNYLDHVMPKQSVGNLMLK-------------VLLNQIVLGPCVIGAVFAWNNIWL 180

Query: 181 GKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSILNF 240
           GKISQLP MYRKDALPT                           L  G RFWIPVSILNF
Sbjct: 181 GKISQLPAMYRKDALPT---------------------------LLYGFRFWIPVSILNF 225

Query: 241 WVVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           WVVPLQA+VAFMSVASIFWNFYLSSTMSK
Sbjct: 241 WVVPLQARVAFMSVASIFWNFYLSSTMSK 225

[Close]

BLAST of Lsi03G021070 vs. ExPASy TrEMBL
Match: A0A6J1JPB9 (protein Mpv17 OS=Cucurbita maxima OX=3661 GN=LOC111486282 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.4e-89
Identity = 178/269 (66.17%), Postives = 197/269 (73.23%), Query Frame = 0


Query: 1   MDVLGGGNGGLWGWNFLLPDFKTSRNKKRRFEPKSSNSLQATGGSAYRFPIKQYSTAGCL 60
           M +LGGG+GGLWGWNF LPD  TSRN +R FE KSSNSLQATGGS Y+FP+KQ  TAGCL
Sbjct: 1   MHLLGGGHGGLWGWNFFLPDSNTSRNNRRSFEAKSSNSLQATGGSGYQFPLKQSLTAGCL 60

Query: 61  TLTGDIIAQSISRWRKGIALNSTSL-SDSASVNKMNIFSEHDWVRSLRMASYGFLLYGPG 120
           TL+GD IAQ + RWRK IALNS+SL  D  S    NIFSEHDW+RSLRM SYG L+YGPG
Sbjct: 61  TLSGDTIAQLVGRWRKEIALNSSSLEKDGVS----NIFSEHDWIRSLRMLSYGILIYGPG 120

Query: 121 SYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNSLWL 180
           S+AWYNYLDHV+P +SV NL+LK             V+LNQIVLGP VIG VFAWN++WL
Sbjct: 121 SFAWYNYLDHVMPKQSVGNLMLK-------------VLLNQIVLGPCVIGAVFAWNNIWL 180

Query: 181 GKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSILNF 240
           GKI+QLP MYRKDALPT                           L  G RFWIPVSILNF
Sbjct: 181 GKINQLPAMYRKDALPT---------------------------LLYGFRFWIPVSILNF 225

Query: 241 WVVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           WVVPLQA+VAFMSVASIFWNFYLSSTMSK
Sbjct: 241 WVVPLQARVAFMSVASIFWNFYLSSTMSK 225

[Close]

BLAST of Lsi03G021070 vs. NCBI nr
Match: XP_038887313.1 (protein SYM1 [Benincasa hispida])

HSP 1 Score: 396.7 bits (1018), Expect = 1.5e-106
Identity = 203/268 (75.75%), Postives = 215/268 (80.22%), Query Frame = 0


Query: 1   MDVLGGGNGGLWGWNFLLPDFKTSRNKKRRFEPKSSNSLQATGGSAYRFPIKQYSTAGCL 60
           MDVLGGGNGGLWGWNFLLPD KTSRNK+RRF+PK SNSLQATGGS +R P+KQY TAGCL
Sbjct: 1   MDVLGGGNGGLWGWNFLLPDSKTSRNKRRRFDPKCSNSLQATGGSGFRLPLKQYLTAGCL 60

Query: 61  TLTGDIIAQSISRWRKGIALNSTSLSDSASVNKMNIFSEHDWVRSLRMASYGFLLYGPGS 120
           TL+GD IAQ ISRWR+GIALNSTSLSDS S +KMNIFSEHDW+RSLRMASYGFLLYGPGS
Sbjct: 61  TLSGDTIAQFISRWREGIALNSTSLSDSDSAHKMNIFSEHDWIRSLRMASYGFLLYGPGS 120

Query: 121 YAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNSLWLG 180
           +AWY YLDHVLP KSVENLILK             VILNQIVLGP+VIGVVFAWNSLWLG
Sbjct: 121 FAWYGYLDHVLPKKSVENLILK-------------VILNQIVLGPAVIGVVFAWNSLWLG 180

Query: 181 KISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSILNFW 240
           KISQLPDMYRKDALPT S+                           GVRFWIPVSILNFW
Sbjct: 181 KISQLPDMYRKDALPTLSY---------------------------GVRFWIPVSILNFW 228

Query: 241 VVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           VVPLQ +VAFMSVASIFWNFYLSSTMSK
Sbjct: 241 VVPLQGRVAFMSVASIFWNFYLSSTMSK 228

[Close]

BLAST of Lsi03G021070 vs. NCBI nr
Match: XP_008449492.1 (PREDICTED: protein sym-1 [Cucumis melo])

HSP 1 Score: 384.8 bits (987), Expect = 6.1e-103
Identity = 200/269 (74.35%), Postives = 213/269 (79.18%), Query Frame = 0


Query: 1   MDVLGGGNGGLWGWNFLLPDFKTSRNKKRR-FEPKSSNSLQATGGSAYRFPIKQYSTAGC 60
           MD L GGNGGLWGWNFLLP  K+SRN KRR FEPKSSNSL+ATGGS +RFPIKQY TAGC
Sbjct: 1   MDALSGGNGGLWGWNFLLPHSKSSRNNKRRSFEPKSSNSLEATGGSGFRFPIKQYVTAGC 60

Query: 61  LTLTGDIIAQSISRWRKGIALNSTSLSDSASVNKMNIFSEHDWVRSLRMASYGFLLYGPG 120
           LTL+GD IAQ  SR+RKGIALNSTSLSDSAS +KMNIF EHDW+RSLRMASYGFLLYGPG
Sbjct: 61  LTLSGDTIAQFFSRYRKGIALNSTSLSDSASADKMNIFLEHDWIRSLRMASYGFLLYGPG 120

Query: 121 SYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNSLWL 180
           S+AWYNYLDHVLP KSVENLILK             VILNQIVLGP+VIGVVFAWNSLWL
Sbjct: 121 SFAWYNYLDHVLPKKSVENLILK-------------VILNQIVLGPAVIGVVFAWNSLWL 180

Query: 181 GKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSILNF 240
           GK+SQLP+MYRKDALPT S+                           GVRFWIPVSILNF
Sbjct: 181 GKLSQLPEMYRKDALPTLSY---------------------------GVRFWIPVSILNF 229

Query: 241 WVVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           WVVPLQ +VAFMSVASIFWNFYLSSTMSK
Sbjct: 241 WVVPLQGRVAFMSVASIFWNFYLSSTMSK 229

[Close]

BLAST of Lsi03G021070 vs. NCBI nr
Match: XP_004140132.1 (protein sym-1 [Cucumis sativus])

HSP 1 Score: 377.9 bits (969), Expect = 7.4e-101
Identity = 195/269 (72.49%), Postives = 211/269 (78.44%), Query Frame = 0


Query: 1   MDVLGGGNGGLWGWNFLLPDFKTSRNKKRR-FEPKSSNSLQATGGSAYRFPIKQYSTAGC 60
           MD   GGNGGLW WNFLL   K+SRN KRR FEPKSSNSL+ATGGS +RFP+KQY TAGC
Sbjct: 1   MDAFSGGNGGLWAWNFLLSHSKSSRNNKRRSFEPKSSNSLEATGGSGFRFPLKQYITAGC 60

Query: 61  LTLTGDIIAQSISRWRKGIALNSTSLSDSASVNKMNIFSEHDWVRSLRMASYGFLLYGPG 120
           LTL+GD IAQ I R+RKGIALNST+LSDSAS +KMNIFSEHDW+RSLRMASYGFLLYGPG
Sbjct: 61  LTLSGDTIAQFIGRYRKGIALNSTALSDSASADKMNIFSEHDWIRSLRMASYGFLLYGPG 120

Query: 121 SYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNSLWL 180
           S+AWYNYLDHVLP KSVENLILK             V+LNQIVLGP+VIGVVFAWNSLWL
Sbjct: 121 SFAWYNYLDHVLPKKSVENLILK-------------VVLNQIVLGPAVIGVVFAWNSLWL 180

Query: 181 GKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSILNF 240
           GK+SQLP+MYRKDALPT S+                           GVRFWIPVSILNF
Sbjct: 181 GKLSQLPEMYRKDALPTLSY---------------------------GVRFWIPVSILNF 229

Query: 241 WVVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           WVVPLQ +VAFMSVASIFWNFYLSSTMSK
Sbjct: 241 WVVPLQGRVAFMSVASIFWNFYLSSTMSK 229

[Close]

BLAST of Lsi03G021070 vs. NCBI nr
Match: XP_022147925.1 (protein Mpv17 [Momordica charantia])

HSP 1 Score: 352.8 bits (904), Expect = 2.6e-93
Identity = 184/272 (67.65%), Postives = 206/272 (75.74%), Query Frame = 0


Query: 1   MDVLGGG-NGGLWGWNFLLPDFKTSRNKKRRFEPKSSNSLQATGGSAYRFPIKQYSTAGC 60
           MD+LGGG +GGLWGWNFLLPD KTSRNK+RRFEPKSSNSL+AT GS +RFP+KQ   AGC
Sbjct: 1   MDLLGGGSHGGLWGWNFLLPDPKTSRNKRRRFEPKSSNSLEATPGSGFRFPLKQSLIAGC 60

Query: 61  LTLTGDIIAQSISRWRKGIALNSTSLSDSASVNK---MNIFSEHDWVRSLRMASYGFLLY 120
           L+L+GD IAQ I RWRKGIALNSTSLS+SAS+++    NIFSEHDW+R+LRM SYGFLLY
Sbjct: 61  LSLSGDTIAQFIGRWRKGIALNSTSLSNSASLSRDGFSNIFSEHDWIRALRMLSYGFLLY 120

Query: 121 GPGSYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNS 180
           GPGS+AWYNYLDH LP +SVENL+LK             V+LNQ+VLGP VI VVFAWN+
Sbjct: 121 GPGSFAWYNYLDHALPKRSVENLMLK-------------VLLNQVVLGPCVIAVVFAWNN 180

Query: 181 LWLGKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSI 240
           +WLGKISQLPD YRKDALPT                           L  G RFWIPV I
Sbjct: 181 IWLGKISQLPDKYRKDALPT---------------------------LLYGFRFWIPVXI 232

Query: 241 LNFWVVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           LNFW VPLQA+V FMSVASIFWNFYLSSTMSK
Sbjct: 241 LNFWAVPLQARVPFMSVASIFWNFYLSSTMSK 232

[Close]

BLAST of Lsi03G021070 vs. NCBI nr
Match: KAG6589283.1 (Protein Mpv17, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022979.1 Protein Mpv17 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.8 bits (891), Expect = 8.2e-92
Identity = 182/269 (67.66%), Postives = 200/269 (74.35%), Query Frame = 0


Query: 1   MDVLGGGNGGLWGWNFLLPDFKTSRNKKRRFEPKSSNSLQATGGSAYRFPIKQYSTAGCL 60
           MD+LGGG+GGLWGWNF LPD  TSRNK+R FE KSSNSLQATGGS Y+FP+KQ  TAGCL
Sbjct: 1   MDLLGGGHGGLWGWNFFLPDSNTSRNKRRSFEAKSSNSLQATGGSGYQFPLKQSLTAGCL 60

Query: 61  TLTGDIIAQSISRWRKGIALNSTSL-SDSASVNKMNIFSEHDWVRSLRMASYGFLLYGPG 120
           TL+GD IAQ + RWRK IALNS+SL  D  S    NIFSEHDW+RSLRM SYG L+YGPG
Sbjct: 61  TLSGDTIAQLVGRWRKEIALNSSSLEKDGVS----NIFSEHDWIRSLRMLSYGILIYGPG 120

Query: 121 SYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWNSLWL 180
           S+AWYNYLDHV+P +SVENL+LK             V+LNQIVLGP VIG VFAWN++WL
Sbjct: 121 SFAWYNYLDHVMPKQSVENLMLK-------------VLLNQIVLGPCVIGAVFAWNNIWL 180

Query: 181 GKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVSILNF 240
           GKISQLP MYRKDALPT                           L  G RFWIPVSILNF
Sbjct: 181 GKISQLPAMYRKDALPT---------------------------LLYGFRFWIPVSILNF 225

Query: 241 WVVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           WVVPLQA+VAFMSVASIFWNFYLSSTMSK
Sbjct: 241 WVVPLQARVAFMSVASIFWNFYLSSTMSK 225

[Close]

BLAST of Lsi03G021070 vs. TAIR 10
Match: AT2G42770.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 259.2 bits (661), Expect = 3.6e-69
Identity = 143/273 (52.38%), Postives = 174/273 (63.74%), Query Frame = 0


Query: 1   MDVLG--GGNGGLWGWNFL--LPDFKTSRNKKRRFEPKSSNSLQAT-GGSAYRFPIKQYS 60
           MD LG  GG GG WGWN        K+S ++ ++    SS+S+  +     YRFP+KQ  
Sbjct: 1   MDALGGCGGAGGFWGWNGFDQRRKKKSSGDRGKKRNSGSSDSVDVSRDAGGYRFPLKQAV 60

Query: 61  TAGCLTLTGDIIAQSISRWRKGIALNSTSLSDSASVNKMNIFSEHDWVRSLRMASYGFLL 120
           TAG LT TGD IAQ   RW+K  AL  +S S+       NIFSEHDW+R+LRM+SYGFLL
Sbjct: 61  TAGALTFTGDTIAQLSGRWKKRTALKQSS-SELDEGELWNIFSEHDWIRALRMSSYGFLL 120

Query: 121 YGPGSYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQIVLGPSVIGVVFAWN 180
           YGPGSYAWY +LDH LP  +  NL+LK             V+LNQ++LGPSVI V+FAWN
Sbjct: 121 YGPGSYAWYQFLDHSLPKPTATNLVLK-------------VLLNQVILGPSVIAVIFAWN 180

Query: 181 SLWLGKISQLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMKLLFDLFAGVRFWIPVS 240
           +LWLGK+S+L + Y+KDALPT                           L  G RFW+PVS
Sbjct: 181 NLWLGKLSELGNKYQKDALPT---------------------------LLYGFRFWVPVS 232

Query: 241 ILNFWVVPLQAQVAFMSVASIFWNFYLSSTMSK 269
           ILNFWVVPLQA+VAFMS+ S+FWNFYLSSTMSK
Sbjct: 241 ILNFWVVPLQARVAFMSMGSVFWNFYLSSTMSK 232

[Close]

BLAST of Lsi03G021070 vs. TAIR 10
Match: AT5G43140.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-07
Identity = 38/164 (23.17%), Postives = 67/164 (40.85%), Query Frame = 0


Query: 101 DWVRSLRMASYGFLLYGPGSYAWYNYLDHVLPTKSVENLILKLFAAEVEDQAYITVILNQ 160
           D +R+ RMAS+G +  GP  + W++YL  +LP + V     K             +++ Q
Sbjct: 121 DLIRTARMASFGLIFLGPSQHLWFSYLSKILPKRDVLTTFKK-------------IMMGQ 180

Query: 161 IVLGPSVIGVVFAWNSLWLGKIS-QLPDMYRKDALPTFSFGKKTSLARAFCCLKDTSVMK 220
           ++ GP    V +++N+   G+ S ++    ++D LPT                       
Sbjct: 181 VLFGPVSNTVFYSYNAALQGENSEEIVARLKRDLLPT----------------------- 240

Query: 221 LLFDLFAGVRFWIPVSILNFWVVPLQAQVAFMSVASIFWNFYLS 264
               L  G+ +W     + F  VP+  Q    S  +  W  YL+
Sbjct: 241 ----LKNGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWTIYLT 244

The following BLAST results are available for this feature:

BLAST of Lsi03G021070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4P9K6	1.6e-05	24.54	Protein SYM1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=SYM1 PE=3 ...	[more]
Q54FR4	7.9e-05	24.71	PXMP2/4 family protein 4 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290631 PE...	[more]
Q5BK62	2.3e-04	25.59	Protein Mpv17 OS=Rattus norvegicus OX=10116 GN=Mpv17 PE=2 SV=1	[more]

BLAST of Lsi03G021070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLI4	2.9e-103	74.35	protein sym-1 OS=Cucumis melo OX=3656 GN=LOC103491365 PE=3 SV=1	[more]
A0A0A0KEM8	3.6e-101	72.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421720 PE=3 SV=1	[more]
A0A6J1D1H6	1.2e-93	67.65	protein Mpv17 OS=Momordica charantia OX=3673 GN=LOC111016738 PE=3 SV=1	[more]
A0A6J1EWS4	2.6e-91	67.29	protein Mpv17 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437238 PE=3 SV=1	[more]
A0A6J1JPB9	1.4e-89	66.17	protein Mpv17 OS=Cucurbita maxima OX=3661 GN=LOC111486282 PE=3 SV=1	[more]

BLAST of Lsi03G021070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887313.1	1.5e-106	75.75	protein SYM1 [Benincasa hispida]	[more]
XP_008449492.1	6.1e-103	74.35	PREDICTED: protein sym-1 [Cucumis melo]	[more]
XP_004140132.1	7.4e-101	72.49	protein sym-1 [Cucumis sativus]	[more]
XP_022147925.1	2.6e-93	67.65	protein Mpv17 [Momordica charantia]	[more]
KAG6589283.1	8.2e-92	67.66	Protein Mpv17, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022979.1 Pro...	[more]

BLAST of Lsi03G021070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42770.1	3.6e-69	52.38	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT5G43140.1	1.8e-07	23.17	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007248	Mpv17/PMP22	PFAM	PF04117	Mpv17_PMP22	coord: 224..263 e-value: 5.1E-11 score: 42.6
IPR007248	Mpv17/PMP22	PANTHER	PTHR11266	PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17	coord: 1..200 coord: 219..268
None	No IPR available	PANTHER	PTHR11266:SF91	EXPRESSED PROTEIN	coord: 1..200 coord: 219..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G021070.1	Lsi03G021070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane