Lsi03G020710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G020710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	E3 ubiquitin-protein ligase SGR9, amyloplastic
Location	chr03: 32015265 .. 32017353 (-)
RNA-Seq Expression	Lsi03G020710
Synteny	Lsi03G020710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCTTCTTATCATGGAAAAGGTTAGTTGTGTTGTGTATAGGCCCTAATTGTTTGTCTTGCTTCAAGTATGCTTAATTTTGACCCATGTTAATAAAATATTTTATGAATTTAATGAAGAAACTTTAGAGTTTTAATTACATACTATAGATTTACCTTTCTTTGCCAACTTGAGTCTATCTATATGGTAAGTTTGTGAGTCTTTTAAGAGTGTAAGAAAAACTCAATTTTTTGAAAATTTATCTAATGACTAGAGTTCAGATAAACAGGATTTTCTATCTCATAATCTAATCTCCCATCAATATCAATCAAATATTGTTTTGTTCTATCTAAATTTATGTGGAGTTTCATATTCTATAATTGACTCTCTATCAGTAATTAATTATTTTTTTCCTTAAATTTATACCAAATTTTAGAAGTATTAGTAGTAACAAGAGATTAGAGTCGCCATTTGATCCTTAGAGCAAGTGGAAAAGAAAAACTCTGATAGAAAAAATATTAAGGGCATGTTTGGCTTAAAGAGTAGAAGTTGTTAACTCAACTCCTTGTTTGGTCAAAAAGTTCTTAATATCAGTGTGGACTCTACGACTTAAAAGCATTAATTTCATGACTTATTAACTCTTTACACCATGAGCTCATCAGCTACTAAATAACTCTTCAAATTCACTCCTTCCTAAAATCCTACTTAAGATTTACCATTGACACACTAAGTCTAGACATTAAAATGGAGATCTTATTACTCACTCAAACACTTGTGGATTGATATGTAAGAGTTTATTTTTTAAGAATAAAATAAGAAAAAGAACTAACTGTATATTTTCTTCTATTTCAATTTCAGTAGTATTTGTTTTTCCTTTTAGTAACAAGATCCATTAGTAAGATAATATTAATATTTCAGCCTAATATGCCACGGGTAAATTGGGATCCACATAAAAAGGTTCATATCTCTCTCCGGAATGAAAGAGCAATACGCTCACGAGATCCCATGATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCCTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGTCACCATCCAAGCTCCTCCCTTACCACCCTTCCATCGCCGCCATCTCCCCTCAAGACCTCGATGCCGCCGTCCTCCTCCTCCTCCTCTGTGAGGTTCGGCAACACAATCCAGCTGCCCTACGAACTCCGATCACCAAATGGCGCGCGACCCTCTGTAGAATCTACTCCGATTCAATATTGACGATCTCCGGTGTCGCCACCGGCGGGGGCGGGGCTTTGATTCCGTACATTGAGACGGTGGCGAGGTGTTGGAAATTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCTTCGCCTATGGCGGTGGTGGAGCTTCCGTCGGTGGCGGTGGGTGGTGGCGGTGCAGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGGGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACAATGTGTACATCTTCTGATGGAGATTAACGTCCAAGATTGAGTGGTTTCGTGGAATTATCATAGAACCGGATGCAGAGGATAGGATTAACACGTGAGACTAACTTACACGTGTGGATGAAACTGGAGGTCTGTAAGGTATGAGCTACAATGGGTCGCTATTAGAAGAAGAGGAGAAGATGGGCTTTGATAAAGACACGTGTGGTTCAACTTGTGGAGATTCAAATGAATCTTTGTATTTATGATTATCTTAGGGTTTAGGAATTGAGGGATGG

mRNA sequence

ATGTGTCTTCTTATCATGGAAAAGCCTAATATGCCACGGGTAAATTGGGATCCACATAAAAAGGTTCATATCTCTCTCCGGAATGAAAGAGCAATACGCTCACGAGATCCCATGATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCCTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGTCACCATCCAAGCTCCTCCCTTACCACCCTTCCATCGCCGCCATCTCCCCTCAAGACCTCGATGCCGCCGTCCTCCTCCTCCTCCTCTGTGAGGTTCGGCAACACAATCCAGCTGCCCTACGAACTCCGATCACCAAATGGCGCGCGACCCTCTGTAGAATCTACTCCGATTCAATATTGACGATCTCCGGTGTCGCCACCGGCGGGGGCGGGGCTTTGATTCCGTACATTGAGACGGTGGCGAGGTGTTGGAAATTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCTTCGCCTATGGCGGTGGTGGAGCTTCCGTCGGTGGCGGTGGGTGGTGGCGGTGCAGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGGGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACAATGTGTACATCTTCTGATGGAGATTAACGTCCAAGATTGAGTGGTTTCGTGGAATTATCATAGAACCGGATGCAGAGGATAGGATTAACACGTGAGACTAACTTACACGTGTGGATGAAACTGGAGGTCTGTAAGGTATGAGCTACAATGGGTCGCTATTAGAAGAAGAGGAGAAGATGGGCTTTGATAAAGACACGTGTGGTTCAACTTGTGGAGATTCAAATGAATCTTTGTATTTATGATTATCTTAGGGTTTAGGAATTGAGGGATGG

Coding sequence (CDS)

ATGTGTCTTCTTATCATGGAAAAGCCTAATATGCCACGGGTAAATTGGGATCCACATAAAAAGGTTCATATCTCTCTCCGGAATGAAAGAGCAATACGCTCACGAGATCCCATGATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCCTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGTCACCATCCAAGCTCCTCCCTTACCACCCTTCCATCGCCGCCATCTCCCCTCAAGACCTCGATGCCGCCGTCCTCCTCCTCCTCCTCTGTGAGGTTCGGCAACACAATCCAGCTGCCCTACGAACTCCGATCACCAAATGGCGCGCGACCCTCTGTAGAATCTACTCCGATTCAATATTGACGATCTCCGGTGTCGCCACCGGCGGGGGCGGGGCTTTGATTCCGTACATTGAGACGGTGGCGAGGTGTTGGAAATTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCTTCGCCTATGGCGGTGGTGGAGCTTCCGTCGGTGGCGGTGGGTGGTGGCGGTGCAGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGGGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACAATGTGTACATCTTCTGATGGAGATTAA

Protein sequence

MCLLIMEKPNMPRVNWDPHKKVHISLRNERAIRSRDPMMEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

Homology

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BLAST of Lsi03G020710 vs. ExPASy Swiss-Prot
Match: Q8GXF8 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SGR9 PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 6.1e-68
Identity = 152/282 (53.90%), Postives = 181/282 (64.18%), Query Frame = 0


Query: 41  ELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSL 100
           E E  T+IMA+LSALSP  L++L+HSI S  HHHRRRL  +LSSPTLFSLTLRHL SLSL
Sbjct: 2   EDENTTIIMASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLSL 61

Query: 101 SHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIA-AISPQDLDAAVLLLLLCEVRQHN 160
             K+ L+A  LLS L     P     K   +H S A  +  +DLDA VLLL LCE  Q +
Sbjct: 62  PDKTHLIANHLLSLL----HPLLIHRK---HHSSYAVTMKLRDLDAVVLLLFLCETHQLH 121

Query: 161 PAALRTPITKWRATLCRIYSDSILT-ISGVATGGGGALIPYIETVARCWKFVGFVGSCGG 220
           P  L      WR  L   YS+++L+  SG+ T   G L+PYIET+ RC +FV  +G    
Sbjct: 122 PDVLEASADNWREILGNTYSNNMLSNNSGLWTCDAGILMPYIETLVRCKRFVDIMGGYNH 181

Query: 221 KARR------EVAASPMAVVELPSVAV----GGGGAAVECVICKEEMGEGRDACKLPCDH 280
             RR      +V A+  AVV L +V V          VECVICKEEM EGRD C++PC H
Sbjct: 182 LRRRDQKEGYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQH 241

Query: 281 LFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLK 311
            FHW CILPWL K+NTCP CRFQLPTDD+F EIQRLWEIL+K
Sbjct: 242 FFHWKCILPWLSKKNTCPFCRFQLPTDDVFSEIQRLWEILVK 276

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BLAST of Lsi03G020710 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-14
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 226 ASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTC 285
           A+   V  LP   + G  A ++C +C  E  E   A ++PC HLFH  CILPWL K N+C
Sbjct: 54  AAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSC 113

Query: 286 PCCRFQLPTDD 297
           P CR++LPTDD
Sbjct: 114 PLCRYELPTDD 124

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BLAST of Lsi03G020710 vs. ExPASy Swiss-Prot
Match: Q3T0W3 (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-14
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 226 ASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTC 285
           A+  AV  LP   + G  A ++C +C  E  E   A ++PC HLFH  CILPWL K N+C
Sbjct: 54  AAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSC 113

Query: 286 PCCRFQLPTDD 297
           P CR +LPTDD
Sbjct: 114 PLCRHELPTDD 124

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BLAST of Lsi03G020710 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-13
Identity = 37/90 (41.11%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 214 GSCGGKARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWL 273
           G  G +     A S +  +E   V+   G   + C +CK+ M  G    KLPC H +H  
Sbjct: 223 GGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGD 282

Query: 274 CILPWLRKRNTCPCCRFQLPTDDIFGEIQR 304
           CI+PWL  RN+CP CRFQL TDD   E +R
Sbjct: 283 CIVPWLGTRNSCPVCRFQLETDDAEYEEER 312

[Close]

BLAST of Lsi03G020710 vs. ExPASy Swiss-Prot
Match: Q9VE61 (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-13
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 226 ASPMAVVELP--SVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRN 285
           AS  A++ELP   +     G  +EC +CKE   EG+    LPC H FH  CIL WL+K N
Sbjct: 46  ASKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTN 105

Query: 286 TCPCCRFQLPTDD-IFGEIQR 304
           +CP CR++L TDD ++ E++R
Sbjct: 106 SCPLCRYELETDDPVYEELRR 126

[Close]

BLAST of Lsi03G020710 vs. ExPASy TrEMBL
Match: A0A1S4DUS9 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo OX=3656 GN=LOC103486430 PE=4 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 7.3e-149
Identity = 263/284 (92.61%), Postives = 273/284 (96.13%), Query Frame = 0


Query: 39  MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSL 98
           MEELEPP+VIMAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEELEPPSVIMAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 99  SLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQH 158
           SLSHKSLLLAR LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 159 NPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGG 218
           NPAALRTPITKWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGG
Sbjct: 121 NPAALRTPITKWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSCGG 180

Query: 219 KARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPW 278
           K RREVAASPMAVVELPSVAVGGGG  VECVICKEEMGEGRDACKLPCDHLFHWLCILPW
Sbjct: 181 KVRREVAASPMAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILPW 240

Query: 279 LRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD 323
           LRKRNTCPCCRFQLPTDD+FGEIQRLWEIL KVGSTMCT SDGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDVFGEIQRLWEILFKVGSTMCT-SDGD 283

[Close]

BLAST of Lsi03G020710 vs. ExPASy TrEMBL
Match: A0A0A0LAQ3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736610 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.6e-148
Identity = 263/284 (92.61%), Postives = 273/284 (96.13%), Query Frame = 0


Query: 39  MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSL 98
           MEELEPP+VI AAL+ LSPP L+DLSHSIFS+IH HRRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEELEPPSVITAALATLSPPRLADLSHSIFSEIHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 99  SLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQH 158
           SLSHKSLLLAR LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 159 NPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGG 218
           NPAALRTPITKWRATLC+IYSDS+LT+SG+ATGGGGALIPYI+TV RCWKFVGFVGSCGG
Sbjct: 121 NPAALRTPITKWRATLCKIYSDSLLTVSGLATGGGGALIPYIDTVVRCWKFVGFVGSCGG 180

Query: 219 KARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPW 278
           K RREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPW
Sbjct: 181 KVRREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPW 240

Query: 279 LRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD 323
           LRKRNTCPCCRFQLPTDD+ GEIQRLWEIL KVGSTMCT SDGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDVLGEIQRLWEILFKVGSTMCT-SDGD 283

[Close]

BLAST of Lsi03G020710 vs. ExPASy TrEMBL
Match: A0A5A7TLA8 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002040 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 1.2e-143
Identity = 254/274 (92.70%), Postives = 263/274 (95.99%), Query Frame = 0


Query: 49  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 108
           MAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA
Sbjct: 1   MAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60

Query: 109 RLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 168
           R LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT
Sbjct: 61  RFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120

Query: 169 KWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKARREVAASP 228
           KWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK RREVAASP
Sbjct: 121 KWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSCGGKVRREVAASP 180

Query: 229 MAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC 288
           MAVVELPSVAVGGGG  VECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC
Sbjct: 181 MAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC 240

Query: 289 RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD 323
           RFQLPTDD+FGEIQRLWEIL KVGSTMCT SDGD
Sbjct: 241 RFQLPTDDVFGEIQRLWEILFKVGSTMCT-SDGD 273

[Close]

BLAST of Lsi03G020710 vs. ExPASy TrEMBL
Match: A0A6J1CX45 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Momordica charantia OX=3673 GN=LOC111015097 PE=4 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 4.7e-140
Identity = 253/306 (82.68%), Postives = 276/306 (90.20%), Query Frame = 0


Query: 19  HKKVHISLRNER--AIRSRDPMMEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRR 78
           HKKVHIS   ++  AIR+ DP+MEELEPPTVIMAALSALSP  LSDLSHSIFSDIHH RR
Sbjct: 8   HKKVHISPNFDKGTAIRTHDPIMEELEPPTVIMAALSALSPLHLSDLSHSIFSDIHHRRR 67

Query: 79  RLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIA 138
           RLTFILSSPTLFSLTLRHLNSLSLSHKSLL+AR LLSALRRL  PFQ P+K LP HPS A
Sbjct: 68  RLTFILSSPTLFSLTLRHLNSLSLSHKSLLIARFLLSALRRLCHPFQPPAKSLPQHPSTA 127

Query: 139 AISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGAL 198
           AI+P+DLDAAVLLLLLCEVRQHNPAAL TP+ KWRA LCRIYSDSIL+ISG+ +GGG  +
Sbjct: 128 AITPRDLDAAVLLLLLCEVRQHNPAALETPLPKWRAALCRIYSDSILSISGIISGGGAVM 187

Query: 199 IPYIETVARCWKFVGFVGSCGGKARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMG 258
           +PY+ETVARCWKFVGFVGSCGGK +REVAASP+AVVELPSVA     AAVECVICKEEMG
Sbjct: 188 VPYVETVARCWKFVGFVGSCGGKGKREVAASPVAVVELPSVA---AAAAVECVICKEEMG 247

Query: 259 EGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMC 318
           EGRDAC+LPC+HLFHWLCILPWLRKRNTCPCCRFQLPTDD+F EIQRLWEILLK+GST+ 
Sbjct: 248 EGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDVFAEIQRLWEILLKLGSTI- 307

Query: 319 TSSDGD 323
           T+SDGD
Sbjct: 308 TTSDGD 309

[Close]

BLAST of Lsi03G020710 vs. ExPASy TrEMBL
Match: A0A6J1F6V7 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita moschata OX=3662 GN=LOC111442657 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 6.8e-131
Identity = 242/285 (84.91%), Postives = 260/285 (91.23%), Query Frame = 0


Query: 39  MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSL 98
           MEEL+P TVIMAALS LS P LSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 99  SLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQH 158
           SLSHKSLL+AR LLSALRRLSRPFQ+PSK  P+HPS AA++P+DLDAAVLLLLLC+VRQH
Sbjct: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120

Query: 159 NPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGS-CG 218
           NPAAL TPIT+WR+TLCRIYSDS+LTISG+ATGG GA IPYIETVARCWKFVGFV S  G
Sbjct: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180

Query: 219 GKARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILP 278
           GKARREVAASP+AVVELPSVAV GG  AVECVICKEEM EGRDAC+LPC+HLFHWLCILP
Sbjct: 181 GKARREVAASPVAVVELPSVAV-GGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILP 240

Query: 279 WLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD 323
           WLRKRNTCPCCRFQLPTDDIFGEIQRLW+IL+KVGS    SSDGD
Sbjct: 241 WLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGS----SSDGD 280

[Close]

BLAST of Lsi03G020710 vs. NCBI nr
Match: XP_016899723.1 (PREDICTED: E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo])

HSP 1 Score: 536.6 bits (1381), Expect = 1.5e-148
Identity = 263/284 (92.61%), Postives = 273/284 (96.13%), Query Frame = 0


Query: 39  MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSL 98
           MEELEPP+VIMAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEELEPPSVIMAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 99  SLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQH 158
           SLSHKSLLLAR LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 159 NPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGG 218
           NPAALRTPITKWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGG
Sbjct: 121 NPAALRTPITKWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSCGG 180

Query: 219 KARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPW 278
           K RREVAASPMAVVELPSVAVGGGG  VECVICKEEMGEGRDACKLPCDHLFHWLCILPW
Sbjct: 181 KVRREVAASPMAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILPW 240

Query: 279 LRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD 323
           LRKRNTCPCCRFQLPTDD+FGEIQRLWEIL KVGSTMCT SDGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDVFGEIQRLWEILFKVGSTMCT-SDGD 283

[Close]

BLAST of Lsi03G020710 vs. NCBI nr
Match: XP_004137953.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis sativus] >KGN58913.1 hypothetical protein Csa_002303 [Cucumis sativus])

HSP 1 Score: 535.4 bits (1378), Expect = 3.3e-148
Identity = 263/284 (92.61%), Postives = 273/284 (96.13%), Query Frame = 0


Query: 39  MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSL 98
           MEELEPP+VI AAL+ LSPP L+DLSHSIFS+IH HRRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEELEPPSVITAALATLSPPRLADLSHSIFSEIHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 99  SLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQH 158
           SLSHKSLLLAR LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 159 NPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGG 218
           NPAALRTPITKWRATLC+IYSDS+LT+SG+ATGGGGALIPYI+TV RCWKFVGFVGSCGG
Sbjct: 121 NPAALRTPITKWRATLCKIYSDSLLTVSGLATGGGGALIPYIDTVVRCWKFVGFVGSCGG 180

Query: 219 KARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPW 278
           K RREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPW
Sbjct: 181 KVRREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPW 240

Query: 279 LRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD 323
           LRKRNTCPCCRFQLPTDD+ GEIQRLWEIL KVGSTMCT SDGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDVLGEIQRLWEILFKVGSTMCT-SDGD 283

[Close]

BLAST of Lsi03G020710 vs. NCBI nr
Match: XP_038905798.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Benincasa hispida])

HSP 1 Score: 532.3 bits (1370), Expect = 2.8e-147
Identity = 266/284 (93.66%), Postives = 271/284 (95.42%), Query Frame = 0


Query: 39  MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSL 98
           ME+LEPPTVIMAALSALSPP LSDLSHSIFSDIH HRRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEKLEPPTVIMAALSALSPPSLSDLSHSIFSDIHLHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 99  SLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQH 158
           SLSHKSLLLAR LLS LRRLS PFQS SKL P+HPS A ISPQDLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSTLRRLSCPFQSQSKLFPHHPSTATISPQDLDAAVLLLLLCEVRQH 120

Query: 159 NPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGG 218
           NPAALRTPITKWRATLCRIYSDS+LTISG+ATGGGGALIPYIETV RCWKFVGFVGSCGG
Sbjct: 121 NPAALRTPITKWRATLCRIYSDSLLTISGIATGGGGALIPYIETVVRCWKFVGFVGSCGG 180

Query: 219 KARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPW 278
           KARREVAASP+AVVELPSVAVGGGGA VECVICKEEM EGRDACKLPCDHLFHWLCILPW
Sbjct: 181 KARREVAASPVAVVELPSVAVGGGGALVECVICKEEMVEGRDACKLPCDHLFHWLCILPW 240

Query: 279 LRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD 323
           LRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCT SDGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCT-SDGD 283

[Close]

BLAST of Lsi03G020710 vs. NCBI nr
Match: KAA0044054.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo var. makuwa] >TYK25081.1 E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo var. makuwa])

HSP 1 Score: 519.2 bits (1336), Expect = 2.5e-143
Identity = 254/274 (92.70%), Postives = 263/274 (95.99%), Query Frame = 0


Query: 49  MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 108
           MAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA
Sbjct: 1   MAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60

Query: 109 RLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 168
           R LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT
Sbjct: 61  RFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120

Query: 169 KWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKARREVAASP 228
           KWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK RREVAASP
Sbjct: 121 KWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSCGGKVRREVAASP 180

Query: 229 MAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC 288
           MAVVELPSVAVGGGG  VECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC
Sbjct: 181 MAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC 240

Query: 289 RFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD 323
           RFQLPTDD+FGEIQRLWEIL KVGSTMCT SDGD
Sbjct: 241 RFQLPTDDVFGEIQRLWEILFKVGSTMCT-SDGD 273

[Close]

BLAST of Lsi03G020710 vs. NCBI nr
Match: XP_022145706.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Momordica charantia])

HSP 1 Score: 507.3 bits (1305), Expect = 9.7e-140
Identity = 253/306 (82.68%), Postives = 276/306 (90.20%), Query Frame = 0


Query: 19  HKKVHISLRNER--AIRSRDPMMEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRR 78
           HKKVHIS   ++  AIR+ DP+MEELEPPTVIMAALSALSP  LSDLSHSIFSDIHH RR
Sbjct: 8   HKKVHISPNFDKGTAIRTHDPIMEELEPPTVIMAALSALSPLHLSDLSHSIFSDIHHRRR 67

Query: 79  RLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIA 138
           RLTFILSSPTLFSLTLRHLNSLSLSHKSLL+AR LLSALRRL  PFQ P+K LP HPS A
Sbjct: 68  RLTFILSSPTLFSLTLRHLNSLSLSHKSLLIARFLLSALRRLCHPFQPPAKSLPQHPSTA 127

Query: 139 AISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGAL 198
           AI+P+DLDAAVLLLLLCEVRQHNPAAL TP+ KWRA LCRIYSDSIL+ISG+ +GGG  +
Sbjct: 128 AITPRDLDAAVLLLLLCEVRQHNPAALETPLPKWRAALCRIYSDSILSISGIISGGGAVM 187

Query: 199 IPYIETVARCWKFVGFVGSCGGKARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMG 258
           +PY+ETVARCWKFVGFVGSCGGK +REVAASP+AVVELPSVA     AAVECVICKEEMG
Sbjct: 188 VPYVETVARCWKFVGFVGSCGGKGKREVAASPVAVVELPSVA---AAAAVECVICKEEMG 247

Query: 259 EGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMC 318
           EGRDAC+LPC+HLFHWLCILPWLRKRNTCPCCRFQLPTDD+F EIQRLWEILLK+GST+ 
Sbjct: 248 EGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDVFAEIQRLWEILLKLGSTI- 307

Query: 319 TSSDGD 323
           T+SDGD
Sbjct: 308 TTSDGD 309

[Close]

BLAST of Lsi03G020710 vs. TAIR 10
Match: AT5G02750.1 (RING/U-box superfamily protein )

HSP 1 Score: 259.2 bits (661), Expect = 4.3e-69
Identity = 152/282 (53.90%), Postives = 181/282 (64.18%), Query Frame = 0


Query: 41  ELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSL 100
           E E  T+IMA+LSALSP  L++L+HSI S  HHHRRRL  +LSSPTLFSLTLRHL SLSL
Sbjct: 2   EDENTTIIMASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLSL 61

Query: 101 SHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIA-AISPQDLDAAVLLLLLCEVRQHN 160
             K+ L+A  LLS L     P     K   +H S A  +  +DLDA VLLL LCE  Q +
Sbjct: 62  PDKTHLIANHLLSLL----HPLLIHRK---HHSSYAVTMKLRDLDAVVLLLFLCETHQLH 121

Query: 161 PAALRTPITKWRATLCRIYSDSILT-ISGVATGGGGALIPYIETVARCWKFVGFVGSCGG 220
           P  L      WR  L   YS+++L+  SG+ T   G L+PYIET+ RC +FV  +G    
Sbjct: 122 PDVLEASADNWREILGNTYSNNMLSNNSGLWTCDAGILMPYIETLVRCKRFVDIMGGYNH 181

Query: 221 KARR------EVAASPMAVVELPSVAV----GGGGAAVECVICKEEMGEGRDACKLPCDH 280
             RR      +V A+  AVV L +V V          VECVICKEEM EGRD C++PC H
Sbjct: 182 LRRRDQKEGYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQH 241

Query: 281 LFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLK 311
            FHW CILPWL K+NTCP CRFQLPTDD+F EIQRLWEIL+K
Sbjct: 242 FFHWKCILPWLSKKNTCPFCRFQLPTDDVFSEIQRLWEILVK 276

[Close]

BLAST of Lsi03G020710 vs. TAIR 10
Match: AT5G08139.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 3.6e-15
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 248 CVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDD 297
           C +CK+EM  G  A +LPC+H +H  CI+PWL+ RNTCP CR++LPTDD
Sbjct: 309 CAVCKDEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVCRYELPTDD 357

[Close]

BLAST of Lsi03G020710 vs. TAIR 10
Match: AT5G64920.1 (COP1-interacting protein 8 )

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-14
Identity = 37/90 (41.11%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 214 GSCGGKARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWL 273
           G  G +     A S +  +E   V+   G   + C +CK+ M  G    KLPC H +H  
Sbjct: 223 GGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGD 282

Query: 274 CILPWLRKRNTCPCCRFQLPTDDIFGEIQR 304
           CI+PWL  RN+CP CRFQL TDD   E +R
Sbjct: 283 CIVPWLGTRNSCPVCRFQLETDDAEYEEER 312

[Close]

BLAST of Lsi03G020710 vs. TAIR 10
Match: AT5G60820.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-14
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 245 AVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTD 296
           AV C +CKEEM  G++  +LPC H +H  CI+PWL  RNTCP CRF+LP+D
Sbjct: 369 AVCCAVCKEEMIVGKEVAELPCRHKYHSECIVPWLGIRNTCPVCRFELPSD 419

[Close]

BLAST of Lsi03G020710 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 6.8e-14
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 226 ASPMAVVELPSVAVGGGGAAVE---CVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKR 285
           AS  A+  LP+V V       E   C +C +E  +G D  ++PC H+FH  C+LPWL   
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 286 NTCPCCRFQLPTDD 297
           N+CP CRF+LPTDD
Sbjct: 251 NSCPVCRFELPTDD 264

The following BLAST results are available for this feature:

BLAST of Lsi03G020710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXF8	6.1e-68	53.90	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9P0P0	3.0e-14	47.89	E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1	[more]
Q3T0W3	3.9e-14	49.30	E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1	[more]
Q9SPL2	3.3e-13	41.11	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV...	[more]
Q9VE61	3.3e-13	45.68	E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN...	[more]

BLAST of Lsi03G020710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DUS9	7.3e-149	92.61	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LAQ3	1.6e-148	92.61	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736610 P...	[more]
A0A5A7TLA8	1.2e-143	92.70	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1CX45	4.7e-140	82.68	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1F6V7	6.8e-131	84.91	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Lsi03G020710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899723.1	1.5e-148	92.61	PREDICTED: E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo]	[more]
XP_004137953.1	3.3e-148	92.61	E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis sativus] >KGN58913.1 hyp...	[more]
XP_038905798.1	2.8e-147	93.66	E3 ubiquitin-protein ligase SGR9, amyloplastic [Benincasa hispida]	[more]
KAA0044054.1	2.5e-143	92.70	E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo var. makuwa] >TYK25...	[more]
XP_022145706.1	9.7e-140	82.68	E3 ubiquitin-protein ligase SGR9, amyloplastic [Momordica charantia]	[more]

BLAST of Lsi03G020710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02750.1	4.3e-69	53.90	RING/U-box superfamily protein	[more]
AT5G08139.1	3.6e-15	59.18	RING/U-box superfamily protein	[more]
AT5G64920.1	2.3e-14	41.11	COP1-interacting protein 8	[more]
AT5G60820.1	5.2e-14	58.82	RING/U-box superfamily protein	[more]
AT3G19950.1	6.8e-14	45.95	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 248..288 e-value: 3.5E-5 score: 33.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 247..289 e-value: 2.8E-11 score: 43.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 248..289 score: 11.884405
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 241..299 e-value: 1.7E-17 score: 64.3
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 38..317
None	No IPR available	PANTHER	PTHR15710:SF67	E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC	coord: 38..317
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 242..295

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G020710.1	Lsi03G020710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0009501	amyloplast
molecular_function	GO:0061630	ubiquitin protein ligase activity