Lsi03G020370 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G020370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription initiation factor TFIID subunit 7-like
Location	chr03: 31727902 .. 31729203 (+)
RNA-Seq Expression	Lsi03G020370
Synteny	Lsi03G020370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCAATATTCCCCAAAGGGAGTCCACTTCCACTCAAAATTTATTCTTCCCTTTTGTTTCTCTCTCTTTAGCTTTCACTTATTCCATGTTCTTTCATTTCCACCACAACTCTCTCTCCTCTTCCATGGTTTTTTATATCCAAACTTTCCTTCTCTTTTTTCTCCCTTTTTTTTCACTCTTATTTTCTTTTCTCCCTCTCTTCCATGGCTATGAACACAAATACTTTATGTCTAGTTTCAACCATGGATCGCCTTTGGTACCACCAAATCATTCTTTGGTCAGATCCCTTAAGTTCCCATCTCCCCAATTTTGTTACCACAACATCTTTTCCTTTCACAAAATTCCCTTCTTGCCCATCTCCCTCCCCTCTCCCATTCTCACCTCTAATGGATCAAACAATAATTCTTCCATCCTCTTTGTCGTCCCCTTCGGTTTCCTCCGACAACATCTCCCTCGTCTCACAGGTAACGTCTCTCTCCTTCATCATACTGTGTGGCACCACTAAATTCAAAAGTTTAAGCTGATTAAGCTATGATATATCAAACATGTTATTTGTCTTCAAGCTTAAAAAATTAACACGACTAATTAAAGAGAAGATAAATGATGAGACTTCGAACATATATAACCTTGTGTTTGCTTTGATATCATGTTAAAAATGGTCTACGTTCGATTTTAACAGGAAGATTATAGTAATGACGAAGACAAAGACAAACAAGATGGGAAGAGAGAGTCAAGCGAAGAAAGTCTCAACAATCTCAAATTTTCAGGTTCAATATAAAATCAAATTTTTTTTATAATTAATTATCATAGTTAAGCTTTGGAAACCCATATATAATGTATGGTATATTGATAAGAATTATTATTATTGTGTGTAGTGGGGAGAAAATTGAACAAATCTATAAGTTGTAAGAGCTTAGGGGAGTTGGAACTTGAAGAAGTTAAAGGGTTTATGGATTTAGGGTTTGAATTTAAGAGAGAAAATTTGAGCCCTCAAATGGTGAAGTTGCTACCTGGTTTACAAAGGCTTAGAAATCAAGTAAACGAACAAAATATCGAAGAATGCAACGACGAAGACGACGACGACGACGACGATAAAGATGAAGAAAATGATGATGATAAGAAGAGAGATATAGCAAGACCATATCTTTCAGAGGCATGGACAATAAAAAGACCAAATTCTCCTCTTCTAAATCTAAGGATGCCAAAGGTTTCTTCAACCTGTGACATGAAGAAACACCTCAAGTCTTGGGCTAAAACTGTTGCATTTGAAATTCAATAAAAATCTTTTAGACTTATTTGAAA

mRNA sequence

CTCCAATATTCCCCAAAGGGAGTCCACTTCCACTCAAAATTTATTCTTCCCTTTTGTTTCTCTCTCTTTAGCTTTCACTTATTCCATGTTCTTTCATTTCCACCACAACTCTCTCTCCTCTTCCATGGTTTTTTATATCCAAACTTTCCTTCTCTTTTTTCTCCCTTTTTTTTCACTCTTATTTTCTTTTCTCCCTCTCTTCCATGGCTATGAACACAAATACTTTATGTCTAGTTTCAACCATGGATCGCCTTTGGTACCACCAAATCATTCTTTGGTCAGATCCCTTAAGTTCCCATCTCCCCAATTTTGTTACCACAACATCTTTTCCTTTCACAAAATTCCCTTCTTGCCCATCTCCCTCCCCTCTCCCATTCTCACCTCTAATGGATCAAACAATAATTCTTCCATCCTCTTTGTCGTCCCCTTCGGTTTCCTCCGACAACATCTCCCTCGTCTCACAGGAAGATTATAGTAATGACGAAGACAAAGACAAACAAGATGGGAAGAGAGAGTCAAGCGAAGAAAGTCTCAACAATCTCAAATTTTCAGTGGGGAGAAAATTGAACAAATCTATAAGTTGTAAGAGCTTAGGGGAGTTGGAACTTGAAGAAGTTAAAGGGTTTATGGATTTAGGGTTTGAATTTAAGAGAGAAAATTTGAGCCCTCAAATGGTGAAGTTGCTACCTGGTTTACAAAGGCTTAGAAATCAAGTAAACGAACAAAATATCGAAGAATGCAACGACGAAGACGACGACGACGACGACGATAAAGATGAAGAAAATGATGATGATAAGAAGAGAGATATAGCAAGACCATATCTTTCAGAGGCATGGACAATAAAAAGACCAAATTCTCCTCTTCTAAATCTAAGGATGCCAAAGGTTTCTTCAACCTGTGACATGAAGAAACACCTCAAGTCTTGGGCTAAAACTGTTGCATTTGAAATTCAATAAAAATCTTTTAGACTTATTTGAAA

Coding sequence (CDS)

ATGGCTATGAACACAAATACTTTATGTCTAGTTTCAACCATGGATCGCCTTTGGTACCACCAAATCATTCTTTGGTCAGATCCCTTAAGTTCCCATCTCCCCAATTTTGTTACCACAACATCTTTTCCTTTCACAAAATTCCCTTCTTGCCCATCTCCCTCCCCTCTCCCATTCTCACCTCTAATGGATCAAACAATAATTCTTCCATCCTCTTTGTCGTCCCCTTCGGTTTCCTCCGACAACATCTCCCTCGTCTCACAGGAAGATTATAGTAATGACGAAGACAAAGACAAACAAGATGGGAAGAGAGAGTCAAGCGAAGAAAGTCTCAACAATCTCAAATTTTCAGTGGGGAGAAAATTGAACAAATCTATAAGTTGTAAGAGCTTAGGGGAGTTGGAACTTGAAGAAGTTAAAGGGTTTATGGATTTAGGGTTTGAATTTAAGAGAGAAAATTTGAGCCCTCAAATGGTGAAGTTGCTACCTGGTTTACAAAGGCTTAGAAATCAAGTAAACGAACAAAATATCGAAGAATGCAACGACGAAGACGACGACGACGACGACGATAAAGATGAAGAAAATGATGATGATAAGAAGAGAGATATAGCAAGACCATATCTTTCAGAGGCATGGACAATAAAAAGACCAAATTCTCCTCTTCTAAATCTAAGGATGCCAAAGGTTTCTTCAACCTGTGACATGAAGAAACACCTCAAGTCTTGGGCTAAAACTGTTGCATTTGAAATTCAATAA

Protein sequence

MAMNTNTLCLVSTMDRLWYHQIILWSDPLSSHLPNFVTTTSFPFTKFPSCPSPSPLPFSPLMDQTIILPSSLSSPSVSSDNISLVSQEDYSNDEDKDKQDGKRESSEESLNNLKFSVGRKLNKSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLRNQVNEQNIEECNDEDDDDDDDKDEENDDDKKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTCDMKKHLKSWAKTVAFEIQ

Homology

[Close]

BLAST of Lsi03G020370 vs. ExPASy TrEMBL
Match: A0A1S3B6W6 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103486470 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 3.1e-91
Identity = 201/256 (78.52%), Postives = 223/256 (87.11%), Query Frame = 0


Query: 1   MAMNT-NTLCLVSTMDRLWYHQIILWSDPLSSHLPNFV-TTTSFPFTKFPSCPSPSPLPF 60
           MAMNT NTLCLVS MDRLWYHQIIL SDP +SH PNF+ +T+SFPFT F   PS    P 
Sbjct: 1   MAMNTNNTLCLVSAMDRLWYHQIILCSDPFTSHFPNFLNSTSSFPFTNF--VPSS---PL 60

Query: 61  SPLMDQTI-ILPSSLSSPSVSSDNISLVSQEDYSNDEDKDKQDGKRESSE-ESLNNLKFS 120
           SPLMDQTI ++PSS SS   SSDNISLVSQEDY+N+EDKDKQD KRESSE +SLNNLKFS
Sbjct: 61  SPLMDQTIDLVPSSSSS---SSDNISLVSQEDYNNEEDKDKQDAKRESSEDQSLNNLKFS 120

Query: 121 VGRKLNKSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLRNQVNEQNI 180
           VGRKLNKS SCKSLGELELEEVKGFMDLGFEFKRE+LSPQMVKL+PGLQRLR Q N+QN+
Sbjct: 121 VGRKLNKSTSCKSLGELELEEVKGFMDLGFEFKRESLSPQMVKLVPGLQRLRTQTNKQNL 180

Query: 181 EECNDEDDDD--DDDKDEENDDDKKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTCDM 240
           EE +D D DD  ++D D+++DDDKKR+IARPYLSEAW I+RPNSPLLNLRMPKVSST DM
Sbjct: 181 EEDDDGDGDDHQENDDDDDDDDDKKREIARPYLSEAWIIRRPNSPLLNLRMPKVSSTSDM 240

Query: 241 KKHLKSWAKTVAFEIQ 251
           KKHL+SWAKTVAFEIQ
Sbjct: 241 KKHLRSWAKTVAFEIQ 248

[Close]

BLAST of Lsi03G020370 vs. ExPASy TrEMBL
Match: A0A6J1CVW5 (uncharacterized protein LOC111015056 OS=Momordica charantia OX=3673 GN=LOC111015056 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 7.5e-77
Identity = 182/253 (71.94%), Postives = 200/253 (79.05%), Query Frame = 0


Query: 1   MAMNTNTLCLVSTMDRLWYHQIILWSDPL-SSHLPNFVTTTSFPFTKFPSCPSPSPLPFS 60
           MAMNT TLCLVS MDRLWYHQIILWSDPL SSHLPNF  T   PFTKFPSCPSPS    S
Sbjct: 1   MAMNTCTLCLVSAMDRLWYHQIILWSDPLSSSHLPNFDQT--LPFTKFPSCPSPS----S 60

Query: 61  PLMDQTIILPSSLSSPSVSS-DNISLVSQEDYSNDEDKDKQDGKRESSEESLNNLKFSVG 120
           PL ++TII PSS S  SVSS D+ISL S E  SND+DK+K+  KRES+E+  NNLK SVG
Sbjct: 61  PLTNETII-PSSFSXLSVSSVDDISLDSXEGCSNDDDKEKEVEKRESTEKMPNNLKSSVG 120

Query: 121 RKLNKSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLRNQVNE-QNIE 180
            KLNKS SC+SLGELELEEVKGF+DLGFEFKRENL+PQMV LLPGLQRL   +N+ + +E
Sbjct: 121 IKLNKSKSCRSLGELELEEVKGFIDLGFEFKRENLNPQMVTLLPGLQRLGIPINKRKQLE 180

Query: 181 ECNDEDDDDDDDKDEENDDDKKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTCDMKKH 240
           E NDE +D         D+D KRD +RPYLSEAWTIKRPNSPLL LRM KVSST DMKKH
Sbjct: 181 EENDEXND---------DEDHKRDKSRPYLSEAWTIKRPNSPLLQLRMSKVSSTSDMKKH 237

Query: 241 LKSWAKTVAFEIQ 251
           LK WAKTVA EIQ
Sbjct: 241 LKFWAKTVASEIQ 237

[Close]

BLAST of Lsi03G020370 vs. ExPASy TrEMBL
Match: A0A5D3DPB9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002450 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 6.8e-70
Identity = 157/193 (81.35%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 62  MDQTI-ILPSSLSSPSVSSDNISLVSQEDYSNDEDKDKQDGKRESSE-ESLNNLKFSVGR 121
           MDQTI ++PSS SS   SSDNISLVSQEDY+N+EDKDKQD KRESSE +SLNNLKFSVGR
Sbjct: 1   MDQTIDLVPSSSSS---SSDNISLVSQEDYNNEEDKDKQDAKRESSEDQSLNNLKFSVGR 60

Query: 122 KLNKSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLRNQVNEQNIEEC 181
           KLNKS SCKSLGELELEEVKGFMDLGFEFKRE+LSPQMVKL+PGLQRLR Q N+QN+EE 
Sbjct: 61  KLNKSTSCKSLGELELEEVKGFMDLGFEFKRESLSPQMVKLVPGLQRLRTQTNKQNLEED 120

Query: 182 NDEDDDD--DDDKDEENDDDKKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTCDMKKH 241
           +D D DD  ++D D+++DDDKKR+IARPYLSEAW I+RPNSPLLNLRMPKVSST DMKKH
Sbjct: 121 DDGDGDDHQENDDDDDDDDDKKREIARPYLSEAWIIRRPNSPLLNLRMPKVSSTSDMKKH 180

Query: 242 LKSWAKTVAFEIQ 251
           L+SWAKTVAFEIQ
Sbjct: 181 LRSWAKTVAFEIQ 190

[Close]

BLAST of Lsi03G020370 vs. ExPASy TrEMBL
Match: A0A6J1J6B4 (uncharacterized protein LOC111482158 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482158 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.7e-68
Identity = 161/248 (64.92%), Postives = 186/248 (75.00%), Query Frame = 0


Query: 4   NTNTLCLVSTMDRLWYHQIILWS-DPLSSHLPNFVTTTSFPFTKFPSCPSPSPLPFSPLM 63
           NTNTLCLVS MDRLW+HQIIL S  P  SHL       +FPF+ F               
Sbjct: 5   NTNTLCLVSAMDRLWHHQIILSSPHPSPSHL-----HPTFPFSNF--------------- 64

Query: 64  DQTIILPSSLSSPSVSSDNISLVSQEDYSNDEDKDKQDGKRESSEESLNNLKFSVGRKLN 123
                 PSSLSS  +  D+ SLVSQED SND DK KQDGK E+ EESL + +F++ +KLN
Sbjct: 65  ------PSSLSSDRIFLDDTSLVSQEDDSNDGDKYKQDGKEEAMEESLTDPEFTMRKKLN 124

Query: 124 KSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLRNQVNEQNIEECNDE 183
           K++SCKSLGELE+EEVKGFMDLGF+F+ ENLSPQMVKL+PGLQR + ++++QN+E   D+
Sbjct: 125 KAMSCKSLGELEMEEVKGFMDLGFQFRTENLSPQMVKLVPGLQRFKTRMDKQNLE---DD 184

Query: 184 DDDDDDDKDEENDDDKKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTCDMKKHLKSWA 243
           DDDDDDD D ENDD KKRDIARPYLSEAWTI RPNSPLL LRMPKVSST DMKK LKSWA
Sbjct: 185 DDDDDDDAD-ENDDHKKRDIARPYLSEAWTINRPNSPLLTLRMPKVSSTSDMKKRLKSWA 222

Query: 244 KTVAFEIQ 251
           +TVA EIQ
Sbjct: 245 RTVAIEIQ 222

[Close]

BLAST of Lsi03G020370 vs. ExPASy TrEMBL
Match: A0A6J1J2S9 (uncharacterized protein LOC111482158 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482158 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 6.6e-65
Identity = 154/248 (62.10%), Postives = 178/248 (71.77%), Query Frame = 0


Query: 4   NTNTLCLVSTMDRLWYHQIILWS-DPLSSHLPNFVTTTSFPFTKFPSCPSPSPLPFSPLM 63
           NTNTLCLVS MDRLW+HQIIL S  P  SHL       +FPF+ F               
Sbjct: 5   NTNTLCLVSAMDRLWHHQIILSSPHPSPSHL-----HPTFPFSNF--------------- 64

Query: 64  DQTIILPSSLSSPSVSSDNISLVSQEDYSNDEDKDKQDGKRESSEESLNNLKFSVGRKLN 123
                 PSSLSS  +  D+ SLVSQED SND DK KQDGK E+ EESL + +F++ +KLN
Sbjct: 65  ------PSSLSSDRIFLDDTSLVSQEDDSNDGDKYKQDGKEEAMEESLTDPEFTMRKKLN 124

Query: 124 KSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLRNQVNEQNIEECNDE 183
           K++SCKSLGELE+EEVKGFMDLGF+F+ ENLSPQMVKL+PGLQR + ++++QN+E     
Sbjct: 125 KAMSCKSLGELEMEEVKGFMDLGFQFRTENLSPQMVKLVPGLQRFKTRMDKQNLE----- 184

Query: 184 DDDDDDDKDEENDDDKKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTCDMKKHLKSWA 243
               DDD     DDDKKRDIARPYLSEAWTI RPNSPLL LRMPKVSST DMKK LKSWA
Sbjct: 185 ----DDD-----DDDKKRDIARPYLSEAWTINRPNSPLLTLRMPKVSSTSDMKKRLKSWA 212

Query: 244 KTVAFEIQ 251
           +TVA EIQ
Sbjct: 245 RTVAIEIQ 212

[Close]

BLAST of Lsi03G020370 vs. NCBI nr
Match: XP_038903410.1 (uncharacterized protein LOC120090009 isoform X1 [Benincasa hispida])

HSP 1 Score: 392.9 bits (1008), Expect = 2.1e-105
Identity = 216/251 (86.06%), Postives = 229/251 (91.24%), Query Frame = 0


Query: 1   MAMNTNTLCLVSTMDRLWYHQIILWSDPLSSHLPNFVTTTSFPFTKFPSCPSPSPLPFSP 60
           MAMNTNTLCLVSTMDRLWYHQIILWSDPLSSH+PNF+ T+SF FT FPS PSPSPLPFSP
Sbjct: 1   MAMNTNTLCLVSTMDRLWYHQIILWSDPLSSHIPNFLNTSSFHFTNFPSSPSPSPLPFSP 60

Query: 61  LMDQTIILPSSLSSPSVSSDNISLVSQEDYSNDEDKDKQDGKRESSEESLNNLKFSVGRK 120
           LMDQ+ ILPSS  SPSVSSDNISLVSQ+ YSNDEDK+KQDGK+E SEESLNNLK SVG K
Sbjct: 61  LMDQS-ILPSSSPSPSVSSDNISLVSQDYYSNDEDKNKQDGKKEPSEESLNNLKLSVGTK 120

Query: 121 LNKSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLR-NQVNEQNIEEC 180
           LNKS SCKSLGELELEEVKGFMDLGFEFK+ENLSP+MVKLLPGLQRLR +Q+N+QN+EE 
Sbjct: 121 LNKSTSCKSLGELELEEVKGFMDLGFEFKKENLSPRMVKLLPGLQRLRTDQINKQNLEE- 180

Query: 181 NDEDDDDDDDKDEENDDDKKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTCDMKKHLK 240
             EDDDDDD    ENDDDKKRDIARPYLSEAWTIKR NSPLLNLRMPKVSST DMKKHLK
Sbjct: 181 --EDDDDDD----ENDDDKKRDIARPYLSEAWTIKRSNSPLLNLRMPKVSSTSDMKKHLK 240

Query: 241 SWAKTVAFEIQ 251
           SWAKTVAFEIQ
Sbjct: 241 SWAKTVAFEIQ 243

[Close]

BLAST of Lsi03G020370 vs. NCBI nr
Match: XP_008442668.1 (PREDICTED: putative uncharacterized protein YGR160W [Cucumis melo])

HSP 1 Score: 344.7 bits (883), Expect = 6.5e-91
Identity = 201/256 (78.52%), Postives = 223/256 (87.11%), Query Frame = 0


Query: 1   MAMNT-NTLCLVSTMDRLWYHQIILWSDPLSSHLPNFV-TTTSFPFTKFPSCPSPSPLPF 60
           MAMNT NTLCLVS MDRLWYHQIIL SDP +SH PNF+ +T+SFPFT F   PS    P 
Sbjct: 1   MAMNTNNTLCLVSAMDRLWYHQIILCSDPFTSHFPNFLNSTSSFPFTNF--VPSS---PL 60

Query: 61  SPLMDQTI-ILPSSLSSPSVSSDNISLVSQEDYSNDEDKDKQDGKRESSE-ESLNNLKFS 120
           SPLMDQTI ++PSS SS   SSDNISLVSQEDY+N+EDKDKQD KRESSE +SLNNLKFS
Sbjct: 61  SPLMDQTIDLVPSSSSS---SSDNISLVSQEDYNNEEDKDKQDAKRESSEDQSLNNLKFS 120

Query: 121 VGRKLNKSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLRNQVNEQNI 180
           VGRKLNKS SCKSLGELELEEVKGFMDLGFEFKRE+LSPQMVKL+PGLQRLR Q N+QN+
Sbjct: 121 VGRKLNKSTSCKSLGELELEEVKGFMDLGFEFKRESLSPQMVKLVPGLQRLRTQTNKQNL 180

Query: 181 EECNDEDDDD--DDDKDEENDDDKKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTCDM 240
           EE +D D DD  ++D D+++DDDKKR+IARPYLSEAW I+RPNSPLLNLRMPKVSST DM
Sbjct: 181 EEDDDGDGDDHQENDDDDDDDDDKKREIARPYLSEAWIIRRPNSPLLNLRMPKVSSTSDM 240

Query: 241 KKHLKSWAKTVAFEIQ 251
           KKHL+SWAKTVAFEIQ
Sbjct: 241 KKHLRSWAKTVAFEIQ 248

[Close]

BLAST of Lsi03G020370 vs. NCBI nr
Match: XP_004137815.3 (uncharacterized protein LOC101215662 [Cucumis sativus] >KGN59144.2 hypothetical protein Csa_001080 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 1.3e-83
Identity = 197/258 (76.36%), Postives = 219/258 (84.88%), Query Frame = 0


Query: 1   MAMNT-NTLCLVSTMDRLWYHQIILW-SDPL-SSHLPNFV-TTTSFPFTKFPSCPSPSPL 60
           MAMNT NTLCLVS MDRLWYHQIIL  SDPL +SH PN + +T+SFPFT F   PS    
Sbjct: 1   MAMNTNNTLCLVSAMDRLWYHQIILCSSDPLFTSHFPNLLNSTSSFPFTNF--LPSS--- 60

Query: 61  PFSPLMDQTIILPSSLSSPSVSSDNISLVSQEDYSNDEDKDKQDGKRESSE-ESLNNLKF 120
           P SPL+DQT ILPSS SS   SSDNISLVSQE+YSN+EDK+KQD KRE SE +SLN LKF
Sbjct: 61  PLSPLVDQT-ILPSSSSS---SSDNISLVSQENYSNEEDKNKQDAKRELSEDQSLNGLKF 120

Query: 121 SVGRKLNKSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLRNQVNEQN 180
           SVGRKLNKS SCKSLGELELEEVKGFMDLGFEFKRE+LSPQMVKL+PGLQRLR Q+N+QN
Sbjct: 121 SVGRKLNKSTSCKSLGELELEEVKGFMDLGFEFKRESLSPQMVKLVPGLQRLRTQINKQN 180

Query: 181 IEECNDEDDDDDDDKDEENDDD---KKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTC 240
           +E+  DED D D DK+ ++DDD   KKR+IARPYLSEAW I+RPNSPLL+LRMPKVSST 
Sbjct: 181 LED--DEDGDGDHDKENDDDDDDKNKKREIARPYLSEAWIIRRPNSPLLDLRMPKVSSTS 240

Query: 241 DMKKHLKSWAKTVAFEIQ 251
           DMKKHL+SWAKTVAFEIQ
Sbjct: 241 DMKKHLRSWAKTVAFEIQ 247

[Close]

BLAST of Lsi03G020370 vs. NCBI nr
Match: XP_022145659.1 (uncharacterized protein LOC111015056 [Momordica charantia])

HSP 1 Score: 296.2 bits (757), Expect = 2.6e-76
Identity = 181/253 (71.54%), Postives = 200/253 (79.05%), Query Frame = 0


Query: 1   MAMNTNTLCLVSTMDRLWYHQIILWSDPL-SSHLPNFVTTTSFPFTKFPSCPSPSPLPFS 60
           MAMNT TLCLVS MDRLWYHQIILWSDPL SSHLPNF  T   PFTKFPSCPSPS    S
Sbjct: 1   MAMNTCTLCLVSAMDRLWYHQIILWSDPLSSSHLPNFDQT--LPFTKFPSCPSPS----S 60

Query: 61  PLMDQTIILPSSLSSPSVSS-DNISLVSQEDYSNDEDKDKQDGKRESSEESLNNLKFSVG 120
           PL ++TII PSS S  SVSS ++ISL S E  SND+DK+K+  KRES+E+  NNLK SVG
Sbjct: 61  PLTNETII-PSSFSXLSVSSVBDISLDSXEGCSNDDDKEKEVEKRESTEKMPNNLKSSVG 120

Query: 121 RKLNKSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLRNQVNE-QNIE 180
            KLNKS SC+SLGELELEEVKGF+DLGFEFKRENL+PQMV LLPGLQRL   +N+ + +E
Sbjct: 121 IKLNKSKSCRSLGELELEEVKGFIDLGFEFKRENLNPQMVTLLPGLQRLGIPINKRKQLE 180

Query: 181 ECNDEDDDDDDDKDEENDDDKKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTCDMKKH 240
           E NDE +D         D+D KRD +RPYLSEAWTIKRPNSPLL LRM KVSST DMKKH
Sbjct: 181 EENDEXND---------DEDHKRDKSRPYLSEAWTIKRPNSPLLQLRMSKVSSTSDMKKH 237

Query: 241 LKSWAKTVAFEIQ 251
           LK WAKTVA EIQ
Sbjct: 241 LKFWAKTVASEIQ 237

[Close]

BLAST of Lsi03G020370 vs. NCBI nr
Match: KAA0044020.1 (putative uncharacterized protein [Cucumis melo var. makuwa] >TYK25120.1 hypothetical protein E5676_scaffold352G002450 [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-69
Identity = 157/193 (81.35%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 62  MDQTI-ILPSSLSSPSVSSDNISLVSQEDYSNDEDKDKQDGKRESSE-ESLNNLKFSVGR 121
           MDQTI ++PSS SS   SSDNISLVSQEDY+N+EDKDKQD KRESSE +SLNNLKFSVGR
Sbjct: 1   MDQTIDLVPSSSSS---SSDNISLVSQEDYNNEEDKDKQDAKRESSEDQSLNNLKFSVGR 60

Query: 122 KLNKSISCKSLGELELEEVKGFMDLGFEFKRENLSPQMVKLLPGLQRLRNQVNEQNIEEC 181
           KLNKS SCKSLGELELEEVKGFMDLGFEFKRE+LSPQMVKL+PGLQRLR Q N+QN+EE 
Sbjct: 61  KLNKSTSCKSLGELELEEVKGFMDLGFEFKRESLSPQMVKLVPGLQRLRTQTNKQNLEED 120

Query: 182 NDEDDDD--DDDKDEENDDDKKRDIARPYLSEAWTIKRPNSPLLNLRMPKVSSTCDMKKH 241
           +D D DD  ++D D+++DDDKKR+IARPYLSEAW I+RPNSPLLNLRMPKVSST DMKKH
Sbjct: 121 DDGDGDDHQENDDDDDDDDDKKREIARPYLSEAWIIRRPNSPLLNLRMPKVSSTSDMKKH 180

Query: 242 LKSWAKTVAFEIQ 251
           L+SWAKTVAFEIQ
Sbjct: 181 LRSWAKTVAFEIQ 190

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BLAST of Lsi03G020370 vs. TAIR 10
Match: AT2G42760.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 4.8e-07
Identity = 61/206 (29.61%), Postives = 103/206 (50.00%), Query Frame = 0


Query: 54  SPLPFSPLMDQTIILPSSLSSPSVSSDNISLVSQEDYSNDEDKDKQDGKRESSEESLNNL 113
           SP    P+    + L + LS   V++   ++  +E   +++++ ++  K++S      N+
Sbjct: 88  SPRSVLPVKPTPMKLQTILSGKEVNA--FTIAERERLLSEKEEQRKKKKKKS------NV 147

Query: 114 KFSVGRKLNKSISCKSLGELELEEVKGFMDLGFEFKR-ENLSPQMVKLLPGLQRLRNQVN 173
           +   G         KS+ +LE EE+KGFMDLGF F   ++    +V +LPGLQRL  +  
Sbjct: 148 RTRKG---------KSMSDLEYEELKGFMDLGFVFSEDDHKDSDLVSILPGLQRLVKK-- 207

Query: 174 EQNIEECNDEDDDDDDDKDEENDDDKKRDIARPYLSEAWTI------KRPNSPLLNLRM- 233
                   D+    +++++EE D       ARPYLSEAW        K+  +P +  R+ 
Sbjct: 208 --------DDGVTKEEEEEEEEDKIGGNRAARPYLSEAWDHCGGRKGKKQITPEIKWRVP 266

Query: 234 -PKVSSTCDMKKHLKSWAKTVAFEIQ 251
            P  +S  D+K +L+ WA  VA  I+
Sbjct: 268 APAAASEVDLKDNLRLWAHAVASTIR 266

The following BLAST results are available for this feature:

BLAST of Lsi03G020370 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G020370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B6W6	3.1e-91	78.52	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103486470 PE=4 SV=1	[more]
A0A6J1CVW5	7.5e-77	71.94	uncharacterized protein LOC111015056 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5D3DPB9	6.8e-70	81.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1J6B4	1.7e-68	64.92	uncharacterized protein LOC111482158 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J2S9	6.6e-65	62.10	uncharacterized protein LOC111482158 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi03G020370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903410.1	2.1e-105	86.06	uncharacterized protein LOC120090009 isoform X1 [Benincasa hispida]	[more]
XP_008442668.1	6.5e-91	78.52	PREDICTED: putative uncharacterized protein YGR160W [Cucumis melo]	[more]
XP_004137815.3	1.3e-83	76.36	uncharacterized protein LOC101215662 [Cucumis sativus] >KGN59144.2 hypothetical ...	[more]
XP_022145659.1	2.6e-76	71.54	uncharacterized protein LOC111015056 [Momordica charantia]	[more]
KAA0044020.1	1.4e-69	81.35	putative uncharacterized protein [Cucumis melo var. makuwa] >TYK25120.1 hypothet...	[more]

BLAST of Lsi03G020370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42760.1	4.8e-07	29.61	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012881	Protein of unknown function DUF1685	PFAM	PF07939	DUF1685	coord: 134..174 e-value: 7.1E-5 score: 22.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..201
None	No IPR available	PANTHER	PTHR33785	FAMILY NOT NAMED	coord: 1..250
None	No IPR available	PANTHER	PTHR33785:SF2	SUBFAMILY NOT NAMED	coord: 1..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G020370.1	Lsi03G020370.1	mRNA