Lsi03G020190 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G020190
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Translin family protein
Location	chr03: 31575148 .. 31577306 (+)
RNA-Seq Expression	Lsi03G020190
Synteny	Lsi03G020190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCATGCCATTGCATCAGGCATGAAGTATGACCTGCGAAGAGTTGAAGAAGTATACTACGATGTTAAGATTCGAGGTTTATCGGCAACGGGTGATTGAACAAGGATACAATCCTTGACGATATGTTATCACTACCAGAACCCCAGTACACAGAAGGAAAAAGGGGAGACGGTCCTTTCTTGTGTTGATTTTGTCATATCTCAGAGATGTTCTTAGGGTATCAAGTTTTGTTTGGTAAAAAGATGGAAAATGATACCTGGTAAAAACCTTACTCTTATAATGGGGCATTCTCCAAGATAACAGCGATTATTGCTTAGGTATTATAGTCAAGCTTTCAAGTCGCTCCCATGTGACTGACCTCCTTTCCTAAGGGTTAATCATATTATCAAATCATTTATGTTTATTATTAAGATTCTTTGCAGGTTACATGAATGGATTGGCATTGGTAACTTCCTACCATTATTAATACTATCCATGGGACGGTTTTTTAAGGTACATTTCTCGAATAATTTACTTTGGTAAAAGGTTTGCAAAAACCAATGCAAGTAGTGTCCCAAACGTGAAAGTATAATCATTTACATTCCCTTGGGGTTGAAAGATCCCTGAAATTGTGGTTGATAACGAAGCCATTGCAGATGCAACCTTATCTCATAGGGTGAAGGAATTACAATCCCAAGGATACTGTGGGTAATGTAAATATCTTTTCCATTTTATATATATATATATATATATATATATATACTTTTCATCAAAAGCAAAGTAATTTACGACCGCAGAGCATTTTAATACCTAAGAATGTAAATTTATCTGTTTAAGTGGAATTGCCAATACAGGTGTTGTTAAAATATTCGAAAATGAAAAATTATTATGTTTGGATGTGATTGGTCCGCGAAAGTTTAATAAAGTTAACAAGTTTTCGATATTGCCTATGTCTTTCGTTTATTGCTAATTAATTTTATTTGTTAAACTGAACATTCTTTTTTTGAAAAAAAAAACGAACTCATTTTCGTGGATTTGATTTATCAGTGAAATATCACTTCAACATAAGGACTTGAAACTTGGCCCATTTGAATCGATCTTTCACCCCAATAGGTGATTAGTCTAAAGGAAAAAAAAAAAGAACTACTAAACGAAAAAGTTGGAGAAATGAGATATTTTAAGTAATTTCATTGCATTATATCCCTCAGTGATGCGACCTTCAGAAGGAAGGTGAAACGAGAGTGGACGAGAAATATTAAACAGGACCATGTTTACTTTTCAGGTTCTACCAATATTTTCAATCTCTTTGATATAAATGTCATCATAGTCGTAAATGATGGCATTAATAAAATCTAGTTGAAAAGTTGTGTTCATTTCCCCGGTTTGACCATAACAAAAACTAAATAAAAATGCTAGAGAGAGGAAAACATTGGTATTAAAAAATAATTTATTTTTGAAGTGCTTGAAACTTGAAAGTCAATCCGAACACTAAGAAAGTGAACAAGTAAAAAGTATGGCCTACCTCAATAGTAATCAAACACTTCCTTTCTATAAAAGGAAAGTGAGGATTATTTTGTCAACATTGAAGTATGTAGTTAGTTACTATATAATTAAGAATGAGAGATTTTCCAAAGTCGACCTGTCATCTTAATCAAAAGTATACTAAATCAAGCAATCATATGGAACACTACAAAACTATTCATCTAAGCATATATGAGGGTATCACCATAATTGGAGTTAAATTTTCTTTCAAACACTTTATTAAGTGTAGACTGTAGTGTGGGCATCATGACTTGTGAGAAAATAATGGATGTCCTTTACAGACTTAAGAATAGTGTACCCATCATGTCTTTCAAGTAAAGTGCAGTTCCTCCTCTATTTGAGCCGTATTATCTAGTTTTTAAAAGTAAAAGTACATGGCCCTATCAAATTTGTTGATTGCTACCCTCGTGATTGTTCCAAAGTTTACCACAATAGCCACTTTTTACTCCCCAACAAATCACATTGGGAGGTCTTCTAGGTTGATTGTGTTCAAATATTCATCATTAGCTTCAGAATGCTCATATTGCATGCTTTGTTAACCTGTAGGTGCTAATTCTAGGTTTTCATTTCCTGTCATTGCCCTTTTTCCCGGTTCAGTTTCTCTTGATGTGATCCAAACGGCCTCGAGTGCTTGA

mRNA sequence

ATGAATCATGCCATTGCATCAGGCATGAAGTATGACCTGCGAAGAGTTGAAGAAGTATACTACGATGTTAAGATTCGAGGTTTATCGGCAACGGAGATGTTCTTAGGGTATCAAGTTTTGTTTGGTAAAAAGATGGAAAATGATACCTGGTTACATGAATGGATTGGCATTGGTAACTTCCTACCATTATTAATACTATCCATGGGACGGTTTTTTAAGATCCCTGAAATTGTGGTTGATAACGAAGCCATTGCAGATGCAACCTTATCTCATAGGGTGAAGGAATTACAATCCCAAGGATACTGTGGTGAAATATCACTTCAACATAAGGACTTGAAACTTGGCCCATTTGAATCGATCTTTCACCCCAATAGTGATGCGACCTTCAGAAGGAAGGTGAAACGAGAGTGGACGAGAAATATTAAACAGGACCATGTTTACTTTTCAGGTGCTAATTCTAGGTTTTCATTTCCTGTCATTGCCCTTTTTCCCGGTTCAGTTTCTCTTGATGTGATCCAAACGGCCTCGAGTGCTTGA

Coding sequence (CDS)

ATGAATCATGCCATTGCATCAGGCATGAAGTATGACCTGCGAAGAGTTGAAGAAGTATACTACGATGTTAAGATTCGAGGTTTATCGGCAACGGAGATGTTCTTAGGGTATCAAGTTTTGTTTGGTAAAAAGATGGAAAATGATACCTGGTTACATGAATGGATTGGCATTGGTAACTTCCTACCATTATTAATACTATCCATGGGACGGTTTTTTAAGATCCCTGAAATTGTGGTTGATAACGAAGCCATTGCAGATGCAACCTTATCTCATAGGGTGAAGGAATTACAATCCCAAGGATACTGTGGTGAAATATCACTTCAACATAAGGACTTGAAACTTGGCCCATTTGAATCGATCTTTCACCCCAATAGTGATGCGACCTTCAGAAGGAAGGTGAAACGAGAGTGGACGAGAAATATTAAACAGGACCATGTTTACTTTTCAGGTGCTAATTCTAGGTTTTCATTTCCTGTCATTGCCCTTTTTCCCGGTTCAGTTTCTCTTGATGTGATCCAAACGGCCTCGAGTGCTTGA

Protein sequence

MNHAIASGMKYDLRRVEEVYYDVKIRGLSATEMFLGYQVLFGKKMENDTWLHEWIGIGNFLPLLILSMGRFFKIPEIVVDNEAIADATLSHRVKELQSQGYCGEISLQHKDLKLGPFESIFHPNSDATFRRKVKREWTRNIKQDHVYFSGANSRFSFPVIALFPGSVSLDVIQTASSA

Homology

[Close]

BLAST of Lsi03G020190 vs. TAIR 10
Match: AT2G37020.1 (Translin family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0


Query: 9   MKYDLRRVEEVYYDVKIRGL 29
           MKYDLRRVEEVYYDVKIRGL
Sbjct: 273 MKYDLRRVEEVYYDVKIRGL 292

[Close]

BLAST of Lsi03G020190 vs. TAIR 10
Match: AT2G37020.2 (Translin family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0


Query: 9   MKYDLRRVEEVYYDVKIRGL 29
           MKYDLRRVEEVYYDVKIRGL
Sbjct: 275 MKYDLRRVEEVYYDVKIRGL 294

The following BLAST results are available for this feature:

BLAST of Lsi03G020190 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G020190 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G020190 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G020190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37020.1	1.2e-04	100.00	Translin family protein	[more]
AT2G37020.2	1.2e-04	100.00	Translin family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G020190.1	Lsi03G020190.1	mRNA