Lsi03G020000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G020000
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Polypeptide N-acetylgalactosaminyltransferase 35A
Location	chr03: 31367016 .. 31369585 (-)
RNA-Seq Expression	Lsi03G020000
Synteny	Lsi03G020000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTATTGTTTCTTTTTCCCTTTTTCCATTAATATTGACGGTTTTGATTTTTCTTTCTTCTCGATTCAGATTAATTGAGATTCATCAAAGCGTTCGTCAGTTCGTCAGATTTGCGATCGTCTTCTTCAATCTCTTCGCAAATCGATTCGAAAATGGTAAAACCCTCAATTTCTTGCGATTGATAGTTTGAAATTTTCTTTTACGTTTGTTTTTTCCTTTGATTAGGTTTGCTTGGCGTGTCTCTTGCCTCTGTTTCTCATTCCAGTCGTCAACGCGCTGCCTGTTCTATTCTATTTAATTATGGTACGCTAATATGATTCTTTTTTCTTTTTGATCTCATCTTTTCGCCTGTTCATCTAATCGCCTAAAAGATTTCGGGTTTTCTATAGTATTTAAGGGAATTTTGTTAATATTCATAATTCATCTCTTGTCGTTTTTCTTGAATTTTCTCTTAGGGCAAAATTTATGGAATTTTTGGCTGGGAATATAGAAAACCACAGAGGGTACCGCCGGCTTGTCCCTATCGCCCTGCTGCCAAACAAAATAGCAATGTGAGTGGGTTCTGCTATTGTTATTACTGTATTTTTGTTTTCTAATTGTCTTTTGACACGAAAGATTAGGGAGATGGATGGATATTTTGTTGAGAAATTGGATATAAATGATGCTTGCGTGTCATGAAGAAGTTTAGAATTTGATCAATTAATCTTGTTGGTGACTAAATGCTTGTTGCTACGGTAGTTTTGGACAACAATGAAGGAGTATTGGCTTCTGCTCTATGTATTGGTTAATTGGTTTTTCAAGAAGTCACGTGTAACAGGGTTCTATCTTGTTACTTCTTGTGACAACTAACGCAGTTCTTCTTCTTTCTTCTGTTTCCAGGGATGGGGGTGGGGGGATTTTCTTCATGTTGAATAGATGCTTGGTGCTACAGTAGTTTTCTAAATCAATTATCTCCTATCGAATAGTGATTTTGGGTAATGGTAGAATGATCAGTTTTCTTTGGTATGTTGAGGTAGATACATGTATGCAAGATTAGGAAGGAAAATGAACTAACTTTTAGACATTGGAAATAAATGATGTGTTCAAAATGACATTTAGCTTGATCCATAAATAAGGAGACCTAATGTTGATTAGGCACTTGTGTCTAGTGTTTTGTAATGTTAGGGTAGTGTCAAAAGAGCAATTAGCTCTACTTAAACAGGCTCAATTCTTTTAGTTTACTTTTTATTTTTTATTTTTTGTATAAGAAGCTGAAATAAATTCGTTCCCGGAACAAAACTGCCCTAAAGGAGAAATGGAGAAGGCGTCCCATTCTCTATGATGAAGGATTACATAAAACTATAAAAGCCCTTCAATCTAAGTTGATGACGTAGGTGGAGTAATGACAAAAAGGAAGAAAAAAGGAAAAAAGAAAGAAAAAAAAAAGAGAAAGAGATTATGTTGGGCTCTCCAATTAGAGACCTTGAACTGTACGAGATCACAAAAATTCTTTGGTGGCAAAACTTCACTGAAGAGGTTGAGAGAGACTCTTTGCTTCGTTTACACCTCATGTTGTTTTGATACTTACCCTTCAAGTCACCAAGGGGAATAGCCTCAAGGCTGCCTCTTTTCCTATTGTTATTAGGTTATAGGACCTGCTAAAATCACTTTTTGTTAGTTGTGAACAATTAAATTTATGCGGGTGTTCGACATTGTTTACACCTACCCTCTAGTGGTTTCAATTCTTAGGGTTTGCTCCTCTGGCTGGTTGAAGCAAGCTTTTTCTTAATCTTAACAGGTGGAGTTAGAACCTCTAGCTGGTCAGCAACACCCACCTCCAAAAGCTGTGGATGCCGTGGATGAGAAGCAAGACTGAATCTAAAGATTTCTGTTGTACATACATGTCAGCAAGATCGACAGATATTTGTGGCCCTGGAAGCTGTGGACGCCGTCGATTTTAGGAAGCTATGATTTCCAATCGATCATGAAGAAAAAAAAAAAAAAAAAAGAACTTTAAACTCTCATCGGTAATACCATCAATACAGTTCATTTTGTGAGAGCGTGCTTTCTGAATAACATCAATACAGACATTGTATGTATGCTTTCTGAATAATTTAGTTGGATGGCTTGAATATGTTTTCCTTAGCTGAAATTGGCCTAAAACATTAGCTTAACTCACTGATACGATGCTTTCTAACTGATGTGTTGTCTGCTTTGTCTGCCTTGATGTTAACACTGTGAAGTTCTCTCTTGGAGCAAGCTGACTAAGATATGTGTTGTTCCCCAATCCACATGGCCCATTGACTGTATAGATTGCATTTTATGTCCACCAATCCACTGTTATTATTGTATGGCTTTTTGTCTTGTTTTTCACTATGTTATATATTTTTGTGATGAAAGGCCAAAAGGCAGAAACGAGATTAGTCGTAACTCCTAAGATAGGAAACCTTATTCAGAAAACTTTAAGTCGAATAAACTTTGTGTAGAGATTATTTTCTCAATGTTTGGCAACATAAATTGTATAGAAGTTATCATCTTGACTGAGTAATATTTATATTTGATAATTTCATAATCATGACTGAGTAATATTT

mRNA sequence

TGGTATTGTTTCTTTTTCCCTTTTTCCATTAATATTGACGGTTTTGATTTTTCTTTCTTCTCGATTCAGATTAATTGAGATTCATCAAAGCGTTCGTCAGTTCGTCAGATTTGCGATCGTCTTCTTCAATCTCTTCGCAAATCGATTCGAAAATGGTTTGCTTGGCGTGTCTCTTGCCTCTGTTTCTCATTCCAGTCGTCAACGCGCTGCCTGTTCTATTCTATTTAATTATGGGCAAAATTTATGGAATTTTTGGCTGGGAATATAGAAAACCACAGAGGGTACCGCCGGCTTGTCCCTATCGCCCTGCTGCCAAACAAAATAGCAATGTGGAGTTAGAACCTCTAGCTGGTCAGCAACACCCACCTCCAAAAGCTGTGGATGCCGTGGATGAGAAGCAAGACTGAATCTAAAGATTTCTGTTGTACATACATGTCAGCAAGATCGACAGATATTTGTGGCCCTGGAAGCTGTGGACGCCGTCGATTTTAGGAAGCTATGATTTCCAATCGATCATGAAGAAAAAAAAAAAAAAAAAAGAACTTTAAACTCTCATCGGTAATACCATCAATACAGTTCATTTTGTGAGAGCGTGCTTTCTGAATAACATCAATACAGACATTGTATGTATGCTTTCTGAATAATTTAGTTGGATGGCTTGAATATGTTTTCCTTAGCTGAAATTGGCCTAAAACATTAGCTTAACTCACTGATACGATGCTTTCTAACTGATGTGTTGTCTGCTTTGTCTGCCTTGATGTTAACACTGTGAAGTTCTCTCTTGGAGCAAGCTGACTAAGATATGTGTTGTTCCCCAATCCACATGGCCCATTGACTGTATAGATTGCATTTTATGTCCACCAATCCACTGTTATTATTGTATGGCTTTTTGTCTTGTTTTTCACTATGTTATATATTTTTGTGATGAAAGGCCAAAAGGCAGAAACGAGATTAGTCGTAACTCCTAAGATAGGAAACCTTATTCAGAAAACTTTAAGTCGAATAAACTTTGTGTAGAGATTATTTTCTCAATGTTTGGCAACATAAATTGTATAGAAGTTATCATCTTGACTGAGTAATATTTATATTTGATAATTTCATAATCATGACTGAGTAATATTT

Coding sequence (CDS)

ATGGTTTGCTTGGCGTGTCTCTTGCCTCTGTTTCTCATTCCAGTCGTCAACGCGCTGCCTGTTCTATTCTATTTAATTATGGGCAAAATTTATGGAATTTTTGGCTGGGAATATAGAAAACCACAGAGGGTACCGCCGGCTTGTCCCTATCGCCCTGCTGCCAAACAAAATAGCAATGTGGAGTTAGAACCTCTAGCTGGTCAGCAACACCCACCTCCAAAAGCTGTGGATGCCGTGGATGAGAAGCAAGACTGA

Protein sequence

MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNVELEPLAGQQHPPPKAVDAVDEKQD

Homology

[Close]

BLAST of Lsi03G020000 vs. ExPASy TrEMBL
Match: A0A0A0LB44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G741830 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.7e-37
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLFYLIMGKIYG+FGWEYRKPQ VPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDEKQD 85
          ELEPLAGQQHPPPK VDA+D+KQD
Sbjct: 61 ELEPLAGQQHPPPKPVDAMDDKQD 84

[Close]

BLAST of Lsi03G020000 vs. ExPASy TrEMBL
Match: A0A1S3B744 (uncharacterized protein LOC103486509 OS=Cucumis melo OX=3656 GN=LOC103486509 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.7e-37
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLFYLIMGKIYG+FGWEYRKPQ VPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDEKQD 85
          ELEPLAGQQHPPPK VDA+D+KQD
Sbjct: 61 ELEPLAGQQHPPPKPVDAMDDKQD 84

[Close]

BLAST of Lsi03G020000 vs. ExPASy TrEMBL
Match: A0A6J1CU80 (uncharacterized protein LOC111014385 OS=Momordica charantia OX=3673 GN=LOC111014385 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLFYLIMGKIYG+FGWEYRKP+RVPPACPYRPAAKQN NV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPERVPPACPYRPAAKQNGNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDEKQD 85
          ELEP AGQQHP PKAVDAVD K+D
Sbjct: 61 ELEPQAGQQHPLPKAVDAVDTKED 84

[Close]

BLAST of Lsi03G020000 vs. ExPASy TrEMBL
Match: A0A6J1F5U6 (uncharacterized protein LOC111442415 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442415 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-34
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNA 60

Query: 61 ELEPLAGQQHPPPKAVDAVDEKQD 85
          ELEP AGQQ PPPK VDA+D+KQD
Sbjct: 61 ELEPPAGQQLPPPKVVDAMDDKQD 84

[Close]

BLAST of Lsi03G020000 vs. ExPASy TrEMBL
Match: A0A6J1KWU0 (uncharacterized protein LOC111498307 OS=Cucurbita maxima OX=3661 GN=LOC111498307 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLF+LIMGKIY IFGWEY KPQRVPPACPYRPAAKQN N 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQN-NE 60

Query: 61 ELEPLAGQQHPPPKAVDAVDEKQD 85
          ELEPLAGQQHPPPKAVDAVD KQD
Sbjct: 61 ELEPLAGQQHPPPKAVDAVDAKQD 83

[Close]

BLAST of Lsi03G020000 vs. NCBI nr
Match: XP_038903023.1 (uncharacterized protein LOC120089725 [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 4.8e-38
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDEKQD 85
          +LEPLAGQQHPPPKAVDA DEKQD
Sbjct: 61 DLEPLAGQQHPPPKAVDAADEKQD 84

[Close]

BLAST of Lsi03G020000 vs. NCBI nr
Match: XP_008442719.1 (PREDICTED: uncharacterized protein LOC103486509 [Cucumis melo] >XP_011651967.1 uncharacterized protein LOC105434961 [Cucumis sativus] >KGN58993.1 hypothetical protein Csa_002586 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 2.0e-36
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLFYLIMGKIYG+FGWEYRKPQ VPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDEKQD 85
          ELEPLAGQQHPPPK VDA+D+KQD
Sbjct: 61 ELEPLAGQQHPPPKPVDAMDDKQD 84

[Close]

BLAST of Lsi03G020000 vs. NCBI nr
Match: XP_023538875.1 (uncharacterized protein LOC111799671 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 3.8e-35
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALPVLF+LIMGKIY IFGWEYRKPQ VPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFHLIMGKIYRIFGWEYRKPQGVPPACPYRPAAKQNSNE 60

Query: 61 ELEPLAGQQHPPPKAVDAVDEKQD 85
          ELEPLAGQQHPPPKAVDAVD KQD
Sbjct: 61 ELEPLAGQQHPPPKAVDAVDAKQD 84

[Close]

BLAST of Lsi03G020000 vs. NCBI nr
Match: KAG6580623.1 (putative xyloglucan endotransglucosylase/hydrolase protein 32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.9 bits (398), Expect = 3.8e-35
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
           MVCLACLLPLFLIPVVNALP+LF LIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV
Sbjct: 291 MVCLACLLPLFLIPVVNALPLLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 350

Query: 61  ELEPLAGQQHPPPKAVDAVDEKQD 85
           ELEPL GQQ PPPK VDAVDEKQD
Sbjct: 351 ELEPLVGQQLPPPKVVDAVDEKQD 374

[Close]

BLAST of Lsi03G020000 vs. NCBI nr
Match: KAG7017382.1 (hypothetical protein SDJN02_19247 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.9 bits (398), Expect = 3.8e-35
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVCLACLLPLFLIPVVNALP+LF LIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV
Sbjct: 1  MVCLACLLPLFLIPVVNALPLLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDEKQD 85
          ELEPL GQQ PPPK VDAVDEKQD
Sbjct: 61 ELEPLVGQQLPPPKVVDAVDEKQD 84

[Close]

BLAST of Lsi03G020000 vs. TAIR 10
Match: AT5G03460.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-14
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60
          MVC+ CL+PLFL+P++N +P +    M K+Y   GWEYRKP RVPPACP++P AK ++  
Sbjct: 1  MVCVMCLVPLFLVPLINLMPRIIDYFMAKLYAWLGWEYRKPARVPPACPFKPVAKNDNAT 60

Query: 61 ELEPLAGQQ 70
          ++    G +
Sbjct: 61 KVGAETGTE 69

The following BLAST results are available for this feature:

BLAST of Lsi03G020000 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G020000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB44	9.7e-37	94.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G741830 PE=4 SV=1	[more]
A0A1S3B744	9.7e-37	94.05	uncharacterized protein LOC103486509 OS=Cucumis melo OX=3656 GN=LOC103486509 PE=...	[more]
A0A6J1CU80	3.1e-35	91.67	uncharacterized protein LOC111014385 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1F5U6	2.6e-34	91.67	uncharacterized protein LOC111442415 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KWU0	1.3e-33	92.86	uncharacterized protein LOC111498307 OS=Cucurbita maxima OX=3661 GN=LOC111498307...	[more]

BLAST of Lsi03G020000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903023.1	4.8e-38	97.62	uncharacterized protein LOC120089725 [Benincasa hispida]	[more]
XP_008442719.1	2.0e-36	94.05	PREDICTED: uncharacterized protein LOC103486509 [Cucumis melo] >XP_011651967.1 u...	[more]
XP_023538875.1	3.8e-35	94.05	uncharacterized protein LOC111799671 [Cucurbita pepo subsp. pepo]	[more]
KAG6580623.1	3.8e-35	94.05	putative xyloglucan endotransglucosylase/hydrolase protein 32, partial [Cucurbit...	[more]
KAG7017382.1	3.8e-35	94.05	hypothetical protein SDJN02_19247 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi03G020000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03460.1	2.3e-14	47.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..84
None	No IPR available	PANTHER	PTHR37756	TRANSMEMBRANE PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G020000.1	Lsi03G020000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane