Lsi03G018650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G018650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr03: 30089960 .. 30090292 (-)
RNA-Seq Expression	Lsi03G018650
Synteny	Lsi03G018650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAAAGAAGCTAGCTTTGGTGGTGGTGTTGGTGGCGATGGTATTTACGAGTTCGTTAGCTCAACTTGTCTCGAACGACGATGAACAACAACGTCAGTTCGAGGAAAATGAAAATGACAACAATAAACTCCGACTCTTCTCTGACGGTAGCAACGATGTCGAAGGAGTAAACTACATTAACGATAACCCGAGAAAAATGATGAAAGCGGCACCGCCGCGCCCCTCATGTTTTGGAAATTTCTGTGGTGGTGGACTACTCCCCTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAACAAGGGGATATTGTGTTGACTTTTAA

mRNA sequence

ATGGAGGGAAAGAAGCTAGCTTTGGTGGTGGTGTTGGTGGCGATGGTATTTACGAGTTCGTTAGCTCAACTTGTCTCGAACGACGATGAACAACAACGTCAGTTCGAGGAAAATGAAAATGACAACAATAAACTCCGACTCTTCTCTGACGGTAGCAACGATGTCGAAGGAGTAAACTACATTAACGATAACCCGAGAAAAATGATGAAAGCGGCACCGCCGCGCCCCTCATGTTTTGGAAATTTCTGTGGTGGTGGACTACTCCCCTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAACAAGGGGATATTGTGTTGACTTTTAA

Coding sequence (CDS)

ATGGAGGGAAAGAAGCTAGCTTTGGTGGTGGTGTTGGTGGCGATGGTATTTACGAGTTCGTTAGCTCAACTTGTCTCGAACGACGATGAACAACAACGTCAGTTCGAGGAAAATGAAAATGACAACAATAAACTCCGACTCTTCTCTGACGGTAGCAACGATGTCGAAGGAGTAAACTACATTAACGATAACCCGAGAAAAATGATGAAAGCGGCACCGCCGCGCCCCTCATGTTTTGGAAATTTCTGTGGTGGTGGACTACTCCCCTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAACAAGGGGATATTGTGTTGACTTTTAA

Protein sequence

MEGKKLALVVVLVAMVFTSSLAQLVSNDDEQQRQFEENENDNNKLRLFSDGSNDVEGVNYINDNPRKMMKAAPPRPSCFGNFCGGGLLPCAEPCQCNIPMGATRGYCVDF

Homology

[Close]

BLAST of Lsi03G018650 vs. ExPASy TrEMBL
Match: A0A0A0LGQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778180 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 75/115 (65.22%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 1   MEGKKLALVVVLVAMVFTSSLAQLVSNDDEQQRQFEENENDNNKLRLFSDGSNDVEGVNY 60
           MEGKKLALVV++V  +FT SLAQ   NDD  +RQFE+NEN    ++LFSDGSND +GV Y
Sbjct: 1   MEGKKLALVVLMVMTIFTCSLAQDALNDD--KRQFEKNEN-KEYIQLFSDGSND-KGVRY 60

Query: 61  INDNPRKMMKAA-------PPRPSCFGNFCGGGLLPCAEPCQCNIPMGATRGYCV 109
            +D  RKMMK A       PP P CFGNFCGGGLL C EPC CNIPMGATRG CV
Sbjct: 61  KDDYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCV 111

[Close]

BLAST of Lsi03G018650 vs. ExPASy TrEMBL
Match: A0A5D3E3L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9509G00010 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.7e-26
Identity = 72/116 (62.07%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MEGKKLALVVVLVAMVFTSSLAQLVSNDDEQQRQFEENENDNNKLRLFSDGSNDV-EGVN 60
           MEGKKLALVVV+  M+FT  LA +  N   ++RQFEENEN    ++LFSD SN+V EGV 
Sbjct: 1   MEGKKLALVVVMTTMIFTCCLAHVALN---EERQFEENEN-KEYIQLFSDDSNNVGEGVK 60

Query: 61  YINDNPRKMMKAA------PPRPS-CFGNFCGGGLLPCAEPCQCNIPMGATRGYCV 109
           Y ND  RKM+K A      PP PS C+GNFCGGGLLPC EPC C+IP+GATRG CV
Sbjct: 61  YKNDYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 112

[Close]

BLAST of Lsi03G018650 vs. ExPASy TrEMBL
Match: A0A5A7TKL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001870 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20
Identity = 61/105 (58.10%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 12  LVAMVFTSSLAQLVSNDDEQQRQFEENENDNNKLRLFSDGSNDV-EGVNYINDNPRKMMK 71
           +  M+FT  LA +  N   ++RQFEENEN    ++LFSD SN+V EGV Y ND  RKM+K
Sbjct: 1   MTTMIFTCCLAHVALN---EERQFEENEN-KEYIQLFSDDSNNVGEGVKYKNDYSRKMIK 60

Query: 72  AA------PPRPS-CFGNFCGGGLLPCAEPCQCNIPMGATRGYCV 109
            A      PP PS C+GNFCGGGLLPC EPC C+IP+GATRG CV
Sbjct: 61  EAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 101

[Close]

BLAST of Lsi03G018650 vs. NCBI nr
Match: KGN59161.1 (hypothetical protein Csa_002402 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-27
Identity = 75/115 (65.22%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 1   MEGKKLALVVVLVAMVFTSSLAQLVSNDDEQQRQFEENENDNNKLRLFSDGSNDVEGVNY 60
           MEGKKLALVV++V  +FT SLAQ   NDD  +RQFE+NEN    ++LFSDGSND +GV Y
Sbjct: 1   MEGKKLALVVLMVMTIFTCSLAQDALNDD--KRQFEKNEN-KEYIQLFSDGSND-KGVRY 60

Query: 61  INDNPRKMMKAA-------PPRPSCFGNFCGGGLLPCAEPCQCNIPMGATRGYCV 109
            +D  RKMMK A       PP P CFGNFCGGGLL C EPC CNIPMGATRG CV
Sbjct: 61  KDDYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCV 111

[Close]

BLAST of Lsi03G018650 vs. NCBI nr
Match: TYK30388.1 (hypothetical protein E5676_scaffold9509G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-25
Identity = 72/116 (62.07%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MEGKKLALVVVLVAMVFTSSLAQLVSNDDEQQRQFEENENDNNKLRLFSDGSNDV-EGVN 60
           MEGKKLALVVV+  M+FT  LA +  N   ++RQFEENEN    ++LFSD SN+V EGV 
Sbjct: 1   MEGKKLALVVVMTTMIFTCCLAHVALN---EERQFEENEN-KEYIQLFSDDSNNVGEGVK 60

Query: 61  YINDNPRKMMKAA------PPRPS-CFGNFCGGGLLPCAEPCQCNIPMGATRGYCV 109
           Y ND  RKM+K A      PP PS C+GNFCGGGLLPC EPC C+IP+GATRG CV
Sbjct: 61  YKNDYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 112

[Close]

BLAST of Lsi03G018650 vs. NCBI nr
Match: KAA0043852.1 (hypothetical protein E6C27_scaffold236G001870 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 4.5e-20
Identity = 61/105 (58.10%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 12  LVAMVFTSSLAQLVSNDDEQQRQFEENENDNNKLRLFSDGSNDV-EGVNYINDNPRKMMK 71
           +  M+FT  LA +  N   ++RQFEENEN    ++LFSD SN+V EGV Y ND  RKM+K
Sbjct: 1   MTTMIFTCCLAHVALN---EERQFEENEN-KEYIQLFSDDSNNVGEGVKYKNDYSRKMIK 60

Query: 72  AA------PPRPS-CFGNFCGGGLLPCAEPCQCNIPMGATRGYCV 109
            A      PP PS C+GNFCGGGLLPC EPC C+IP+GATRG CV
Sbjct: 61  EAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 101

[Close]

BLAST of Lsi03G018650 vs. NCBI nr
Match: KAG6580718.1 (hypothetical protein SDJN03_20720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-18
Identity = 60/119 (50.42%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 1   MEGKKLALVVVLVAMVFTSSLAQLVSNDDEQQRQFEENENDNNKLRLFSDGSNDVEGVNY 60
           MEGKK+ALVV+LV M FTS+LA                     + +L +DGSND  G + 
Sbjct: 1   MEGKKVALVVLLVTMAFTSALA---------------------RNQLIADGSNDRAGSDE 60

Query: 61  INDNPRKMMKAAP---------PRPSCFGNFCGGGLLPCAEPCQCNIPMGATRGYCVDF 111
             D   KM + AP         PRPSCFGNFCGGGLLPC EPC C IPMG+ RG CVDF
Sbjct: 61  Y-DELIKMAEGAPEAAPEPAPSPRPSCFGNFCGGGLLPCDEPCFCFIPMGSQRGSCVDF 97

The following BLAST results are available for this feature:

BLAST of Lsi03G018650 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G018650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGQ3	1.4e-27	65.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778180 PE=4 SV=1	[more]
A0A5D3E3L2	7.7e-26	62.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TKL8	2.2e-20	58.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lsi03G018650 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59161.1	2.9e-27	65.22	hypothetical protein Csa_002402 [Cucumis sativus]	[more]
TYK30388.1	1.6e-25	62.07	hypothetical protein E5676_scaffold9509G00010 [Cucumis melo var. makuwa]	[more]
KAA0043852.1	4.5e-20	58.10	hypothetical protein E6C27_scaffold236G001870 [Cucumis melo var. makuwa]	[more]
KAG6580718.1	4.2e-18	50.42	hypothetical protein SDJN03_20720, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi03G018650 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G018650.1	Lsi03G018650.1	mRNA