Lsi03G018390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G018390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NDR1/HIN1-like protein 10
Location	chr03: 29825388 .. 29825969 (+)
RNA-Seq Expression	Lsi03G018390
Synteny	Lsi03G018390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTTTATGGTGTCTTTTGATGTGCGTCATTATTGGGTTTGGAGTATCTTTTGGTTTCTCTGTGTTGATCTTATGGCTTGTTTTCATAACCCACAAGATCAAATTCAATGTAATCGACGCCACTCTCACTCAATTTAACTTCACCAACAATGACACCCAACTCCATTACAATCTTGGTATTTACTTCACCATTAGAAACCCTAATGAGCAAGTTGGAATCTACTATGACACCATCGAAGCAACTACAATTTACAAAGATCAAAACTTTGACACAAGATTGCTTACCCCTTTTTACCAAACCCCAAAGACCACAAGCCTAGTTAGAGGACGGTTTGAAGGGCAACAGCTTGTGGTAATCGCCAACAACAAAGTTTCTGAATTCAATTCTGAGAAACTTTCTGGGGTTTATTCCATTGATATCAAATTTCGTCTTTCTTTGAGGTTGAAATTTGGGCTTTATAAAATCGTTAGAGTTAGGCCTAAGGTGGGGTGTGGATTTCAAGTTCCATTGAATGTTAGTGGAACTTCTTCCTTTCCGTGGTTTCAGACTGCTATTGGTTGTCACGTTGATTATTGA

mRNA sequence

ATGGCAAGTTTATGGTGTCTTTTGATGTGCGTCATTATTGGGTTTGGAGTATCTTTTGGTTTCTCTGTGTTGATCTTATGGCTTGTTTTCATAACCCACAAGATCAAATTCAATGTAATCGACGCCACTCTCACTCAATTTAACTTCACCAACAATGACACCCAACTCCATTACAATCTTGGTATTTACTTCACCATTAGAAACCCTAATGAGCAAGTTGGAATCTACTATGACACCATCGAAGCAACTACAATTTACAAAGATCAAAACTTTGACACAAGATTGCTTACCCCTTTTTACCAAACCCCAAAGACCACAAGCCTAGTTAGAGGACGGTTTGAAGGGCAACAGCTTGTGGTAATCGCCAACAACAAAGTTTCTGAATTCAATTCTGAGAAACTTTCTGGGGTTTATTCCATTGATATCAAATTTCGTCTTTCTTTGAGGTTGAAATTTGGGCTTTATAAAATCGTTAGAGTTAGGCCTAAGGTGGGGTGTGGATTTCAAGTTCCATTGAATGTTAGTGGAACTTCTTCCTTTCCGTGGTTTCAGACTGCTATTGGTTGTCACGTTGATTATTGA

Coding sequence (CDS)

ATGGCAAGTTTATGGTGTCTTTTGATGTGCGTCATTATTGGGTTTGGAGTATCTTTTGGTTTCTCTGTGTTGATCTTATGGCTTGTTTTCATAACCCACAAGATCAAATTCAATGTAATCGACGCCACTCTCACTCAATTTAACTTCACCAACAATGACACCCAACTCCATTACAATCTTGGTATTTACTTCACCATTAGAAACCCTAATGAGCAAGTTGGAATCTACTATGACACCATCGAAGCAACTACAATTTACAAAGATCAAAACTTTGACACAAGATTGCTTACCCCTTTTTACCAAACCCCAAAGACCACAAGCCTAGTTAGAGGACGGTTTGAAGGGCAACAGCTTGTGGTAATCGCCAACAACAAAGTTTCTGAATTCAATTCTGAGAAACTTTCTGGGGTTTATTCCATTGATATCAAATTTCGTCTTTCTTTGAGGTTGAAATTTGGGCTTTATAAAATCGTTAGAGTTAGGCCTAAGGTGGGGTGTGGATTTCAAGTTCCATTGAATGTTAGTGGAACTTCTTCCTTTCCGTGGTTTCAGACTGCTATTGGTTGTCACGTTGATTATTGA

Protein sequence

MASLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGIYFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIANNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSFPWFQTAIGCHVDY

Homology

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BLAST of Lsi03G018390 vs. ExPASy Swiss-Prot
Match: Q9SJ52 (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-33
Identity = 80/191 (41.88%), Postives = 116/191 (60.73%), Query Frame = 0


Query: 4   LWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGIY 63
           L  L + VII   V  G + LI WL+     IKF+V DA+LT+F+ T+ D  L YNL + 
Sbjct: 37  LLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALT 96

Query: 64  FTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIAN 123
             +RNPN+++G+YYD IEA   Y+ + F T  LTPFYQ  K T+++   F+GQ LV+   
Sbjct: 97  VPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNA 156

Query: 124 NKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGC-GFQVPLNVSGTSSFPW 183
            +    N+E++SGVY+I+IKFRL +R K G  K  R++PKV C   ++PL+ S  ++   
Sbjct: 157 GQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTS 216

Query: 184 FQTAIGCHVDY 194
               I C  D+
Sbjct: 217 TVFPIKCDFDF 227

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BLAST of Lsi03G018390 vs. ExPASy Swiss-Prot
Match: Q9FNH6 (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-32
Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 0


Query: 11  VIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNF--TNNDTQLHYNLGIYFTIRN 70
           ++I   V  G + LI+WL+F  + IKF+V DA LT+F    TNN   L YNL + FTIRN
Sbjct: 51  ILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNN---LRYNLDLNFTIRN 110

Query: 71  PNEQVGIYYDTIEATTIYKDQNFD-TRLLTPFYQTPKTTSLVRGRFEGQQLVVIANNKVS 130
           PN ++G+YYD IE    Y DQ F  +  ++ FYQ  K T++V  +  GQQLV++   +  
Sbjct: 111 PNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERK 170

Query: 131 EFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSFPWFQTAI 190
           + N +  S +Y ID K RL +R KFGL K  R +PK+ C  +VPL  + TS F +  T  
Sbjct: 171 DLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQPTK- 230

Query: 191 GCHVDY 194
            C VD+
Sbjct: 231 -CDVDF 231

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BLAST of Lsi03G018390 vs. ExPASy Swiss-Prot
Match: Q9SRN1 (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.7e-30
Identity = 72/187 (38.50%), Postives = 113/187 (60.43%), Query Frame = 0


Query: 7   LLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGIYFTI 66
           L+  ++I   V  G + LILWL+F  + +KF V DA L +F+F  N+  LHY+L + FTI
Sbjct: 54  LICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNN-NLHYSLDLNFTI 113

Query: 67  RNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIANNKV 126
           RNPN++VG+YYD    +  Y DQ F +  ++ FYQ  K T+++  + EGQ LVV+ +   
Sbjct: 114 RNPNQRVGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGAR 173

Query: 127 SEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGC-GFQVPLNVSGTSSFPWFQT 186
           ++   ++ SG+Y I+ K RLS+R KF   K  +++PK+ C   ++PL  S ++    FQ 
Sbjct: 174 TDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGGFKFQ- 233

Query: 187 AIGCHVD 193
            + C  D
Sbjct: 234 PVQCDFD 238

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BLAST of Lsi03G018390 vs. ExPASy Swiss-Prot
Match: Q9C615 (Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-19
Identity = 51/148 (34.46%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 32  THKIKFNVIDATLTQFNFTNNDTQLHYNLGIYFTIRNPNEQVGIYYDTIEATTIYKDQNF 91
           ++ +KF V DA LT F+  +N+  L Y+L +  +IRN    +GI+YD  EAT  Y +Q  
Sbjct: 4   SNDVKFQVYDAELTHFDLESNN-NLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 63

Query: 92  DTRLLTPFYQTPKTTSLVRGRFEGQQLVVIANNKVSEFNSEKLSGVYSIDIKFRLSLRLK 151
               +  FY   K T L+R  FEGQ LV++  N+  +F  ++ +GVY ID+K  ++ R+ 
Sbjct: 64  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 123

Query: 152 FGLYKIVRVRPKVGCGFQVPLNVSGTSS 180
                   ++P V C  ++PL +  ++S
Sbjct: 124 VLHLVTWPMKPVVRCHLKIPLALGSSNS 150

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BLAST of Lsi03G018390 vs. ExPASy Swiss-Prot
Match: Q8LD98 (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08
Identity = 48/164 (29.27%), Postives = 77/164 (46.95%), Query Frame = 0


Query: 5   WCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGIYF 64
           +C   C ++   V+ G S+ IL+LVF      +++    LT+F   N D+ L     +  
Sbjct: 66  FCYTFCFLLLLVVAVGASIGILYLVFKPKLPDYSIDRLQLTRFAL-NQDSSLTTAFNVTI 125

Query: 65  TIRNPNEQVGIYY-DTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIAN 124
           T +NPNE++GIYY D  + T  Y +       L  FYQ  + T+++     GQ       
Sbjct: 126 TAKNPNEKIGIYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGL 185

Query: 125 NKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCG 168
               E   ++ +G   + I+    +R+KFG  K+  VR  V CG
Sbjct: 186 RTTLE-EQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCG 227

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BLAST of Lsi03G018390 vs. ExPASy TrEMBL
Match: A0A0A0LGS2 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778960 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.4e-93
Identity = 170/193 (88.08%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MASLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNL 60
           MASLWCLL+ VI+ FGVSFGF+VLILWLVFITHKIKFNV DATLTQFNFTNNDTQL YNL
Sbjct: 23  MASLWCLLISVIVAFGVSFGFTVLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLQYNL 82

Query: 61  GIYFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVV 120
           GIYFTIRNPNE+VGIYYDTIEAT +YKDQNFDTRLLTPFYQTPKTTSL+RGRFEGQ+ VV
Sbjct: 83  GIYFTIRNPNERVGIYYDTIEATAMYKDQNFDTRLLTPFYQTPKTTSLLRGRFEGQRAVV 142

Query: 121 IANNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSF 180
           I NNKVSE NSEKL+GVYSID+KFRLSLRLKFG+YKI+RVRPKV CGFQVPLN +GTSSF
Sbjct: 143 IGNNKVSELNSEKLAGVYSIDVKFRLSLRLKFGIYKIIRVRPKVECGFQVPLNFTGTSSF 202

Query: 181 PWFQTAIGCHVDY 194
           PWFQ AIGCHVDY
Sbjct: 203 PWFQDAIGCHVDY 215

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BLAST of Lsi03G018390 vs. ExPASy TrEMBL
Match: A0A1S3B955 (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103487147 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.4e-91
Identity = 168/193 (87.05%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MASLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNL 60
           MASLWCLL+ VI+ FG SFGF+VLILWLVFITHKIKFNV DATLTQFNFTNNDTQL YNL
Sbjct: 1   MASLWCLLISVIVAFGASFGFTVLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLQYNL 60

Query: 61  GIYFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVV 120
           GIYFTIRNPNE+VGIYYDTIEAT +YKDQNFDTRLLTPFYQTPKTTSL+RGRFEGQ+ VV
Sbjct: 61  GIYFTIRNPNERVGIYYDTIEATAMYKDQNFDTRLLTPFYQTPKTTSLLRGRFEGQRAVV 120

Query: 121 IANNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSF 180
           I NNKVSE  SEKL+GVYS+D+KFRLSLRLKFG+YKIVRVRPKV C FQVPLN SGTSSF
Sbjct: 121 IGNNKVSELKSEKLAGVYSVDVKFRLSLRLKFGIYKIVRVRPKVECRFQVPLNSSGTSSF 180

Query: 181 PWFQTAIGCHVDY 194
           PWFQ AIGCHVDY
Sbjct: 181 PWFQEAIGCHVDY 193

[Close]

BLAST of Lsi03G018390 vs. ExPASy TrEMBL
Match: A0A5A7TR00 (Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001580 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.0e-78
Identity = 148/191 (77.49%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 3   SLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGI 62
           SLWC L+ +I+   +SFG S+LILWL+FIT+KIKFNV DATLTQFNFTNNDTQLHYNLG+
Sbjct: 5   SLWCFLISIIVVIAISFGGSILILWLIFITNKIKFNVTDATLTQFNFTNNDTQLHYNLGV 64

Query: 63  YFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIA 122
           +FTIRNPN+QVGIYYDTI+AT +YK QNFDTRLLTPFYQ   TTSL++GRFEGQQ+VVI 
Sbjct: 65  FFTIRNPNKQVGIYYDTIDATAMYKGQNFDTRLLTPFYQGSSTTSLLKGRFEGQQVVVIP 124

Query: 123 NNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSFPW 182
           NN VSE  SEKLSGVYSID++FRLSLRLKFGL+K +RVRPKVGCGFQVPLN SG SS   
Sbjct: 125 NNTVSELKSEKLSGVYSIDVEFRLSLRLKFGLFKFIRVRPKVGCGFQVPLNSSGASS--- 184

Query: 183 FQTAIGCHVDY 194
           FQ AIGC VDY
Sbjct: 185 FQNAIGCDVDY 192

[Close]

BLAST of Lsi03G018390 vs. ExPASy TrEMBL
Match: A0A1S3B970 (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103487148 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.0e-78
Identity = 148/191 (77.49%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 3   SLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGI 62
           SLWC L+ +I+   +SFG S+LILWL+FIT+KIKFNV DATLTQFNFTNNDTQLHYNLG+
Sbjct: 5   SLWCFLISIIVVIAISFGGSILILWLIFITNKIKFNVTDATLTQFNFTNNDTQLHYNLGV 64

Query: 63  YFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIA 122
           +FTIRNPN+QVGIYYDTI+AT +YK QNFDTRLLTPFYQ   TTSL++GRFEGQQ+VVI 
Sbjct: 65  FFTIRNPNKQVGIYYDTIDATAMYKGQNFDTRLLTPFYQGSSTTSLLKGRFEGQQVVVIP 124

Query: 123 NNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSFPW 182
           NN VSE  SEKLSGVYSID++FRLSLRLKFGL+K +RVRPKVGCGFQVPLN SG SS   
Sbjct: 125 NNTVSELKSEKLSGVYSIDVEFRLSLRLKFGLFKFIRVRPKVGCGFQVPLNSSGASS--- 184

Query: 183 FQTAIGCHVDY 194
           FQ AIGC VDY
Sbjct: 185 FQNAIGCDVDY 192

[Close]

BLAST of Lsi03G018390 vs. ExPASy TrEMBL
Match: A0A0A0LEQ7 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778970 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.9e-77
Identity = 146/191 (76.44%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 3   SLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGI 62
           S+WCLL+ VII F +SFG S+LILWL+FIT+KIKF+V DA LTQFNFTNNDTQLHYNLG+
Sbjct: 4   SIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGV 63

Query: 63  YFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIA 122
           +FTIRNPN+Q+GIYYDTIEAT +YK QNFDTRLLTPFYQ  +TTSL++GRF+GQ++VVI 
Sbjct: 64  FFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIP 123

Query: 123 NNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSFPW 182
           NN VSE  SEKLSGVYSI++KFRLS RLK GLYK +RVRPKVGCGFQVPL  SGTSS   
Sbjct: 124 NNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS--- 183

Query: 183 FQTAIGCHVDY 194
           FQ AIGC VDY
Sbjct: 184 FQNAIGCDVDY 191

[Close]

BLAST of Lsi03G018390 vs. NCBI nr
Match: XP_038904447.1 (NDR1/HIN1-like protein 10 [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.3e-99
Identity = 181/193 (93.78%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MASLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNL 60
           MASLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNV DATLTQFNFTNNDTQLHYNL
Sbjct: 1   MASLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLHYNL 60

Query: 61  GIYFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVV 120
           G+YFTIRNPNEQVGIYYDTIEATT YKDQNF TRLLTPFYQTPKTTSL++GRFEGQQLVV
Sbjct: 61  GVYFTIRNPNEQVGIYYDTIEATTSYKDQNFHTRLLTPFYQTPKTTSLLKGRFEGQQLVV 120

Query: 121 IANNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSF 180
           IANNKVSEFN+EKL+GVYSID+KFRLSLRLKFGLYKI+RVRPKVGCGFQ+PLN SGTSSF
Sbjct: 121 IANNKVSEFNTEKLAGVYSIDVKFRLSLRLKFGLYKIIRVRPKVGCGFQLPLNSSGTSSF 180

Query: 181 PWFQTAIGCHVDY 194
           PWFQTAIGCHVDY
Sbjct: 181 PWFQTAIGCHVDY 193

[Close]

BLAST of Lsi03G018390 vs. NCBI nr
Match: XP_004136708.1 (NDR1/HIN1-like protein 10 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 7.0e-93
Identity = 170/193 (88.08%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MASLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNL 60
           MASLWCLL+ VI+ FGVSFGF+VLILWLVFITHKIKFNV DATLTQFNFTNNDTQL YNL
Sbjct: 1   MASLWCLLISVIVAFGVSFGFTVLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLQYNL 60

Query: 61  GIYFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVV 120
           GIYFTIRNPNE+VGIYYDTIEAT +YKDQNFDTRLLTPFYQTPKTTSL+RGRFEGQ+ VV
Sbjct: 61  GIYFTIRNPNERVGIYYDTIEATAMYKDQNFDTRLLTPFYQTPKTTSLLRGRFEGQRAVV 120

Query: 121 IANNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSF 180
           I NNKVSE NSEKL+GVYSID+KFRLSLRLKFG+YKI+RVRPKV CGFQVPLN +GTSSF
Sbjct: 121 IGNNKVSELNSEKLAGVYSIDVKFRLSLRLKFGIYKIIRVRPKVECGFQVPLNFTGTSSF 180

Query: 181 PWFQTAIGCHVDY 194
           PWFQ AIGCHVDY
Sbjct: 181 PWFQDAIGCHVDY 193

[Close]

BLAST of Lsi03G018390 vs. NCBI nr
Match: XP_008443591.1 (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 344.7 bits (883), Expect = 5.0e-91
Identity = 168/193 (87.05%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MASLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNL 60
           MASLWCLL+ VI+ FG SFGF+VLILWLVFITHKIKFNV DATLTQFNFTNNDTQL YNL
Sbjct: 1   MASLWCLLISVIVAFGASFGFTVLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLQYNL 60

Query: 61  GIYFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVV 120
           GIYFTIRNPNE+VGIYYDTIEAT +YKDQNFDTRLLTPFYQTPKTTSL+RGRFEGQ+ VV
Sbjct: 61  GIYFTIRNPNERVGIYYDTIEATAMYKDQNFDTRLLTPFYQTPKTTSLLRGRFEGQRAVV 120

Query: 121 IANNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSF 180
           I NNKVSE  SEKL+GVYS+D+KFRLSLRLKFG+YKIVRVRPKV C FQVPLN SGTSSF
Sbjct: 121 IGNNKVSELKSEKLAGVYSVDVKFRLSLRLKFGIYKIVRVRPKVECRFQVPLNSSGTSSF 180

Query: 181 PWFQTAIGCHVDY 194
           PWFQ AIGCHVDY
Sbjct: 181 PWFQEAIGCHVDY 193

[Close]

BLAST of Lsi03G018390 vs. NCBI nr
Match: KAE8651105.1 (hypothetical protein Csa_001204 [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 4.7e-81
Identity = 150/168 (89.29%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 23  VLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGIYFTIRNPNEQVGIYYDTIEA 82
           VLILWLVFITHKIKFNV DATLTQFNFTNNDTQL YNLGIYFTIRNPNE+VGIYYDTIEA
Sbjct: 186 VLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLQYNLGIYFTIRNPNERVGIYYDTIEA 245

Query: 83  TTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIANNKVSEFNSEKLSGVYSIDI 142
           T +YKDQNFDTRLLTPFYQTPKTTSL+RGRFEGQ+ VVI NNKVSE NSEKL+GVYSID+
Sbjct: 246 TAMYKDQNFDTRLLTPFYQTPKTTSLLRGRFEGQRAVVIGNNKVSELNSEKLAGVYSIDV 305

Query: 143 KFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSFPWFQTAIGCH 191
           KFRLSLRLKFG+YKI+RVRPKV CGFQVPLN +GTSSFPWFQ AIGCH
Sbjct: 306 KFRLSLRLKFGIYKIIRVRPKVECGFQVPLNFTGTSSFPWFQDAIGCH 353

[Close]

BLAST of Lsi03G018390 vs. NCBI nr
Match: XP_008443592.1 (PREDICTED: protein YLS9-like [Cucumis melo] >KAA0043825.1 protein YLS9-like [Cucumis melo var. makuwa])

HSP 1 Score: 300.8 bits (769), Expect = 8.3e-78
Identity = 148/191 (77.49%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 3   SLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGI 62
           SLWC L+ +I+   +SFG S+LILWL+FIT+KIKFNV DATLTQFNFTNNDTQLHYNLG+
Sbjct: 5   SLWCFLISIIVVIAISFGGSILILWLIFITNKIKFNVTDATLTQFNFTNNDTQLHYNLGV 64

Query: 63  YFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIA 122
           +FTIRNPN+QVGIYYDTI+AT +YK QNFDTRLLTPFYQ   TTSL++GRFEGQQ+VVI 
Sbjct: 65  FFTIRNPNKQVGIYYDTIDATAMYKGQNFDTRLLTPFYQGSSTTSLLKGRFEGQQVVVIP 124

Query: 123 NNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSFPW 182
           NN VSE  SEKLSGVYSID++FRLSLRLKFGL+K +RVRPKVGCGFQVPLN SG SS   
Sbjct: 125 NNTVSELKSEKLSGVYSIDVEFRLSLRLKFGLFKFIRVRPKVGCGFQVPLNSSGASS--- 184

Query: 183 FQTAIGCHVDY 194
           FQ AIGC VDY
Sbjct: 185 FQNAIGCDVDY 192

[Close]

BLAST of Lsi03G018390 vs. TAIR 10
Match: AT2G35980.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 144.4 bits (363), Expect = 9.3e-35
Identity = 80/191 (41.88%), Postives = 116/191 (60.73%), Query Frame = 0


Query: 4   LWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGIY 63
           L  L + VII   V  G + LI WL+     IKF+V DA+LT+F+ T+ D  L YNL + 
Sbjct: 37  LLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALT 96

Query: 64  FTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIAN 123
             +RNPN+++G+YYD IEA   Y+ + F T  LTPFYQ  K T+++   F+GQ LV+   
Sbjct: 97  VPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNA 156

Query: 124 NKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGC-GFQVPLNVSGTSSFPW 183
            +    N+E++SGVY+I+IKFRL +R K G  K  R++PKV C   ++PL+ S  ++   
Sbjct: 157 GQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTS 216

Query: 184 FQTAIGCHVDY 194
               I C  D+
Sbjct: 217 TVFPIKCDFDF 227

[Close]

BLAST of Lsi03G018390 vs. TAIR 10
Match: AT2G35460.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-33
Identity = 79/198 (39.90%), Postives = 109/198 (55.05%), Query Frame = 0


Query: 6   CLLMC----------VIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQ 65
           CLL C          ++IG  V  G   LILW +   + +KF V +A LT+F F      
Sbjct: 42  CLLCCGGCLVNIICNILIGVLVCLGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHN 101

Query: 66  LHYNLGIYFTIRNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEG 125
           LHYN+ + F+IRNPN+++GI+YD +E    Y DQ F    +T FYQ  K T++V     G
Sbjct: 102 LHYNISLNFSIRNPNQRLGIHYDQLEVRGYYGDQRFSAANMTSFYQGHKNTTVVGTELNG 161

Query: 126 QQLVVIANNKVSEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVS 185
           Q+LV++      +F  ++ SGVY ID+K R  LR KFG      VRPK+ C  +VPL+ S
Sbjct: 162 QKLVLLGAGGRRDFREDRRSGVYRIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLSTS 221

Query: 186 GTSS-FPWFQTAIGCHVD 193
            +   F +  T   CHVD
Sbjct: 222 SSDERFQFHPTK--CHVD 237

[Close]

BLAST of Lsi03G018390 vs. TAIR 10
Match: AT5G06320.1 (NDR1/HIN1-like 3 )

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-33
Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 0


Query: 11  VIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNF--TNNDTQLHYNLGIYFTIRN 70
           ++I   V  G + LI+WL+F  + IKF+V DA LT+F    TNN   L YNL + FTIRN
Sbjct: 51  ILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNN---LRYNLDLNFTIRN 110

Query: 71  PNEQVGIYYDTIEATTIYKDQNFD-TRLLTPFYQTPKTTSLVRGRFEGQQLVVIANNKVS 130
           PN ++G+YYD IE    Y DQ F  +  ++ FYQ  K T++V  +  GQQLV++   +  
Sbjct: 111 PNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERK 170

Query: 131 EFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGCGFQVPLNVSGTSSFPWFQTAI 190
           + N +  S +Y ID K RL +R KFGL K  R +PK+ C  +VPL  + TS F +  T  
Sbjct: 171 DLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQPTK- 230

Query: 191 GCHVDY 194
            C VD+
Sbjct: 231 -CDVDF 231

[Close]

BLAST of Lsi03G018390 vs. TAIR 10
Match: AT3G11650.1 (NDR1/HIN1-like 2 )

HSP 1 Score: 131.7 bits (330), Expect = 6.2e-31
Identity = 72/187 (38.50%), Postives = 113/187 (60.43%), Query Frame = 0


Query: 7   LLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVIDATLTQFNFTNNDTQLHYNLGIYFTI 66
           L+  ++I   V  G + LILWL+F  + +KF V DA L +F+F  N+  LHY+L + FTI
Sbjct: 54  LICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNN-NLHYSLDLNFTI 113

Query: 67  RNPNEQVGIYYDTIEATTIYKDQNFDTRLLTPFYQTPKTTSLVRGRFEGQQLVVIANNKV 126
           RNPN++VG+YYD    +  Y DQ F +  ++ FYQ  K T+++  + EGQ LVV+ +   
Sbjct: 114 RNPNQRVGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGAR 173

Query: 127 SEFNSEKLSGVYSIDIKFRLSLRLKFGLYKIVRVRPKVGC-GFQVPLNVSGTSSFPWFQT 186
           ++   ++ SG+Y I+ K RLS+R KF   K  +++PK+ C   ++PL  S ++    FQ 
Sbjct: 174 TDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGGFKFQ- 233

Query: 187 AIGCHVD 193
            + C  D
Sbjct: 234 PVQCDFD 238

[Close]

BLAST of Lsi03G018390 vs. TAIR 10
Match: AT1G32270.1 (syntaxin, putative )

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-20
Identity = 51/148 (34.46%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 32  THKIKFNVIDATLTQFNFTNNDTQLHYNLGIYFTIRNPNEQVGIYYDTIEATTIYKDQNF 91
           ++ +KF V DA LT F+  +N+  L Y+L +  +IRN    +GI+YD  EAT  Y +Q  
Sbjct: 4   SNDVKFQVYDAELTHFDLESNN-NLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 63

Query: 92  DTRLLTPFYQTPKTTSLVRGRFEGQQLVVIANNKVSEFNSEKLSGVYSIDIKFRLSLRLK 151
               +  FY   K T L+R  FEGQ LV++  N+  +F  ++ +GVY ID+K  ++ R+ 
Sbjct: 64  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 123

Query: 152 FGLYKIVRVRPKVGCGFQVPLNVSGTSS 180
                   ++P V C  ++PL +  ++S
Sbjct: 124 VLHLVTWPMKPVVRCHLKIPLALGSSNS 150

The following BLAST results are available for this feature:

BLAST of Lsi03G018390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ52	1.3e-33	41.88	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]
Q9FNH6	2.5e-32	43.01	NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1	[more]
Q9SRN1	8.7e-30	38.50	NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1	[more]
Q9C615	2.4e-19	34.46	Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1	[more]
Q8LD98	2.5e-08	29.27	NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1	[more]

BLAST of Lsi03G018390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGS2	3.4e-93	88.08	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778960 PE=4 ...	[more]
A0A1S3B955	2.4e-91	87.05	protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103487147 PE=4 SV=1	[more]
A0A5A7TR00	4.0e-78	77.49	Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00...	[more]
A0A1S3B970	4.0e-78	77.49	protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103487148 PE=4 SV=1	[more]
A0A0A0LEQ7	9.9e-77	76.44	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778970 PE=4 ...	[more]

BLAST of Lsi03G018390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904447.1	1.3e-99	93.78	NDR1/HIN1-like protein 10 [Benincasa hispida]	[more]
XP_004136708.1	7.0e-93	88.08	NDR1/HIN1-like protein 10 [Cucumis sativus]	[more]
XP_008443591.1	5.0e-91	87.05	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
KAE8651105.1	4.7e-81	89.29	hypothetical protein Csa_001204 [Cucumis sativus]	[more]
XP_008443592.1	8.3e-78	77.49	PREDICTED: protein YLS9-like [Cucumis melo] >KAA0043825.1 protein YLS9-like [Cuc...	[more]

BLAST of Lsi03G018390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35980.1	9.3e-35	41.88	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G35460.1	1.3e-33	39.90	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G06320.1	1.7e-33	43.01	NDR1/HIN1-like 3	[more]
AT3G11650.1	6.2e-31	38.50	NDR1/HIN1-like 2	[more]
AT1G32270.1	1.7e-20	34.46	syntaxin, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 64..164 e-value: 1.7E-11 score: 44.6
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 4..186
None	No IPR available	PANTHER	PTHR31415:SF105	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 4..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G018390.1	Lsi03G018390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0016021	integral component of membrane