Lsi03G018290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G018290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	chr03: 29789966 .. 29790601 (+)
RNA-Seq Expression	Lsi03G018290
Synteny	Lsi03G018290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTACGACTGCGAGAAGCACTGCAAGAAAAAGCGCAAGAAGCTCATCAAACTAATCGGCGCCATCATCGGCATCTTCATCTTCCTCGTACTCCTCACCATCCTCATCGTCTGGGCCGTCCTCCGCCCTACCAAGCCCACTTTCTACCTTCAAGACGTCACCGTCTACGCCTTCAACGCTACCGTCCCCAGCTTTCTCACCTCCAATTTCCTCCTCACTGTCTCCGCTCGCAACCCCAACCGCCGCATCGGAATCTACTACGACGACCTCCACGTCTACGCTATCTACCGGAACCAACAGATCACTCTCCGGACCATCATCCCTCGGTTTTACCAGGGCCATAAGGACGTCAACGTATGGTCCCCTTTCGTCTCCGGCACCTCCGTGCCGGTCGCGCCCTTCATCAGTTCGGCGCTGAATCAGGACCGGGACGCCGGAGCGCTGATGCTCCTGGTCAAAATTGACGGCAAGGTCCGGTGGAAGGTCGGAAGCTTCATCACCGGTCGGTACCAATTCCACGCGAACTGCCCGGTGGTGATAAACTTCGGTGCGTATCCGGCGACCGGAGACGGGTCGATTGTTCAGTATAACGTGAAGTACCAGGTGGTTCAGAGATGCGACGTTAGTGTTTGA

mRNA sequence

ATGGCGTACGACTGCGAGAAGCACTGCAAGAAAAAGCGCAAGAAGCTCATCAAACTAATCGGCGCCATCATCGGCATCTTCATCTTCCTCGTACTCCTCACCATCCTCATCGTCTGGGCCGTCCTCCGCCCTACCAAGCCCACTTTCTACCTTCAAGACGTCACCGTCTACGCCTTCAACGCTACCGTCCCCAGCTTTCTCACCTCCAATTTCCTCCTCACTGTCTCCGCTCGCAACCCCAACCGCCGCATCGGAATCTACTACGACGACCTCCACGTCTACGCTATCTACCGGAACCAACAGATCACTCTCCGGACCATCATCCCTCGGTTTTACCAGGGCCATAAGGACGTCAACGTATGGTCCCCTTTCGTCTCCGGCACCTCCGTGCCGGTCGCGCCCTTCATCAGTTCGGCGCTGAATCAGGACCGGGACGCCGGAGCGCTGATGCTCCTGGTCAAAATTGACGGCAAGGTCCGGTGGAAGGTCGGAAGCTTCATCACCGGTCGGTACCAATTCCACGCGAACTGCCCGGTGGTGATAAACTTCGGTGCGTATCCGGCGACCGGAGACGGGTCGATTGTTCAGTATAACGTGAAGTACCAGGTGGTTCAGAGATGCGACGTTAGTGTTTGA

Coding sequence (CDS)

ATGGCGTACGACTGCGAGAAGCACTGCAAGAAAAAGCGCAAGAAGCTCATCAAACTAATCGGCGCCATCATCGGCATCTTCATCTTCCTCGTACTCCTCACCATCCTCATCGTCTGGGCCGTCCTCCGCCCTACCAAGCCCACTTTCTACCTTCAAGACGTCACCGTCTACGCCTTCAACGCTACCGTCCCCAGCTTTCTCACCTCCAATTTCCTCCTCACTGTCTCCGCTCGCAACCCCAACCGCCGCATCGGAATCTACTACGACGACCTCCACGTCTACGCTATCTACCGGAACCAACAGATCACTCTCCGGACCATCATCCCTCGGTTTTACCAGGGCCATAAGGACGTCAACGTATGGTCCCCTTTCGTCTCCGGCACCTCCGTGCCGGTCGCGCCCTTCATCAGTTCGGCGCTGAATCAGGACCGGGACGCCGGAGCGCTGATGCTCCTGGTCAAAATTGACGGCAAGGTCCGGTGGAAGGTCGGAAGCTTCATCACCGGTCGGTACCAATTCCACGCGAACTGCCCGGTGGTGATAAACTTCGGTGCGTATCCGGCGACCGGAGACGGGTCGATTGTTCAGTATAACGTGAAGTACCAGGTGGTTCAGAGATGCGACGTTAGTGTTTGA

Protein sequence

MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFNATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPATGDGSIVQYNVKYQVVQRCDVSV

Homology

[Close]

BLAST of Lsi03G018290 vs. ExPASy Swiss-Prot
Match: Q9SRN0 (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.0e-60
Identity = 116/211 (54.98%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 4   DCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFNAT- 63
           DCE H   +RK + ++  +II + +F++ LTIL++WA+L+P+KP F LQD TVYAFN + 
Sbjct: 3   DCENHGHSRRKLIRRIFWSIIFV-LFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSG 62

Query: 64  -VPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNVW 123
             P+ LTSNF +T+S+RNPN +IGIYYD L VYA YR+QQIT  T IP  YQGHKDV++W
Sbjct: 63  NPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIW 122

Query: 124 SPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVI 183
           SPFV GTSVP+APF   +L+ D+D G ++L+++ DG+VRWKVG+FITG+Y  H  CP  I
Sbjct: 123 SPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYI 182

Query: 184 NFGAYPATGDGSIVQYN-VKYQVVQRCDVSV 212
           NFG      +G IV  N VKY     C VSV
Sbjct: 183 NFG---NKANGVIVGDNAVKYTFTTSCSVSV 209

[Close]

BLAST of Lsi03G018290 vs. ExPASy Swiss-Prot
Match: Q9SJ54 (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.0e-56
Identity = 109/194 (56.19%), Postives = 141/194 (72.68%), Query Frame = 0


Query: 18  KLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFNATVPSFLTSNFLLTVSA 77
           ++ G IIG FI +VL+TI +VW +L+PTKP F LQD TVYAFN + P+ LTSNF +T+++
Sbjct: 20  RICGVIIG-FIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIAS 79

Query: 78  RNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFIS 137
           RN N RIGIYYD LHVYA YRNQQITLRT IP  YQGHK+ NVWSPFV G SVP+APF +
Sbjct: 80  RNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNA 139

Query: 138 SALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPATGDGSIVQY 197
            AL  +++ G + L+++ DG+VRWKVG+ ITG+Y  H  C   IN  A  A G   + + 
Sbjct: 140 VALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINL-ADKAAG-VHVGEN 199

Query: 198 NVKYQVVQRCDVSV 212
            VKY ++ +C V+V
Sbjct: 200 AVKYMLINKCSVNV 210

[Close]

BLAST of Lsi03G018290 vs. ExPASy Swiss-Prot
Match: Q9FI03 (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.4e-35
Identity = 73/184 (39.67%), Postives = 115/184 (62.50%), Query Frame = 0


Query: 7   KHCKKKRKKLI----KLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFNAT 66
           KHC KK    I    K +      F   +LL I +VW +L P +P F L +  +Y+ N T
Sbjct: 10  KHCAKKGGININNRHKKLFFTFSTFFSGLLLIIFLVWLILHPERPEFSLTEADIYSLNLT 69

Query: 67  VPS--FLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 126
             S   L S+  LT+ ++NPN+++GIYYD L VYA YR QQIT    +P FYQ H+++N+
Sbjct: 70  TSSTHLLNSSVQLTLFSKNPNKKVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINL 129

Query: 127 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 185
            + F+ GT +PVA      ++++R  G +++ +K+DGK+RWK+G++++G Y+F+ NC  +
Sbjct: 130 LTAFLQGTELPVAQSFGYQISRERSTGKIIIGMKMDGKLRWKIGTWVSGAYRFNVNCLAI 189

[Close]

BLAST of Lsi03G018290 vs. ExPASy Swiss-Prot
Match: Q9SJ52 (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-16
Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 0


Query: 16  LIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFNATVP-SFLTSNFLLT 75
           L+ L   +I   I ++ +  LI W ++RP    F++ D ++  F+ T P + L  N  LT
Sbjct: 37  LLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALT 96

Query: 76  VSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPV-A 135
           V  RNPN+RIG+YYD +  +A Y  ++ +  T+ P FYQGHK+  V +P   G ++ +  
Sbjct: 97  VPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTP-FYQGHKNTTVLTPTFQGQNLVIFN 156

Query: 136 PFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANC 178
              S  LN +R +G   + +K   +VR+K+G     R +   +C
Sbjct: 157 AGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDC 199

[Close]

BLAST of Lsi03G018290 vs. ExPASy Swiss-Prot
Match: Q9FNH6 (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-14
Identity = 53/179 (29.61%), Postives = 86/179 (48.04%), Query Frame = 0


Query: 21  GAIIGIFIFLVLLTI--------LIVWAVLRPTKPTFYLQDVTVYAFNATVPSFLTSNFL 80
           G  I   IF +L+TI        LI+W + RP    F++ D  +  F     + L  N  
Sbjct: 41  GCCILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLD 100

Query: 81  LTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVN-VWSPFVSGTSVP 140
           L  + RNPNRRIG+YYD++ V   Y +Q+  +   I +FYQGHK+   V +  V    V 
Sbjct: 101 LNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVL 160

Query: 141 VAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPATG 191
           +       LN+D ++    +  K+  K+R+K G   + R++    C + +   +   +G
Sbjct: 161 LDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSG 219

[Close]

BLAST of Lsi03G018290 vs. ExPASy TrEMBL
Match: A0A5A7TRJ4 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001520 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.2e-112
Identity = 202/211 (95.73%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           MAYDCEKHCKKKRKKLIKLIGAIIG+FIFLVLLTILIVWAVLRPTKPTF+LQDVTVYAFN
Sbjct: 69  MAYDCEKHCKKKRKKLIKLIGAIIGVFIFLVLLTILIVWAVLRPTKPTFFLQDVTVYAFN 128

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
           ATVPSFLTSNFLLT+S+RNPNRRIGIYYD+LHVYAIYRNQQITLRTIIPRFYQGHKDVNV
Sbjct: 129 ATVPSFLTSNFLLTISSRNPNRRIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNV 188

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFVSGTSVPVAPFISSALNQDR+AGALM+LVKIDGKVRWKVGSFITGRYQFHANCPVV
Sbjct: 189 WSPFVSGTSVPVAPFISSALNQDRNAGALMILVKIDGKVRWKVGSFITGRYQFHANCPVV 248

Query: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           INFGAYPA GDGS+VQYNVKYQVVQRCDVSV
Sbjct: 249 INFGAYPANGDGSMVQYNVKYQVVQRCDVSV 279

[Close]

BLAST of Lsi03G018290 vs. ExPASy TrEMBL
Match: A0A5D3DNV1 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004510 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.2e-112
Identity = 202/211 (95.73%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           MAYDCEKHCKKKRKKLIKLIGAIIG+FIFLVLLTILIVWAVLRPTKPTF+LQDVTVYAFN
Sbjct: 1   MAYDCEKHCKKKRKKLIKLIGAIIGVFIFLVLLTILIVWAVLRPTKPTFFLQDVTVYAFN 60

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
           ATVPSFLTSNFLLT+S+RNPNRRIGIYYD+LHVYAIYRNQQITLRTIIPRFYQGHKDVNV
Sbjct: 61  ATVPSFLTSNFLLTISSRNPNRRIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFVSGTSVPVAPFISSALNQDR+AGALM+LVKIDGKVRWKVGSFITGRYQFHANCPVV
Sbjct: 121 WSPFVSGTSVPVAPFISSALNQDRNAGALMILVKIDGKVRWKVGSFITGRYQFHANCPVV 180

Query: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           INFGAYPA GDGS+VQYNVKYQVVQRCDVSV
Sbjct: 181 INFGAYPANGDGSMVQYNVKYQVVQRCDVSV 211

[Close]

BLAST of Lsi03G018290 vs. ExPASy TrEMBL
Match: A0A1S3B6T7 (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103486673 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.2e-112
Identity = 202/211 (95.73%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           MAYDCEKHCKKKRKKLIKLIGAIIG+FIFLVLLTILIVWAVLRPTKPTF+LQDVTVYAFN
Sbjct: 1   MAYDCEKHCKKKRKKLIKLIGAIIGVFIFLVLLTILIVWAVLRPTKPTFFLQDVTVYAFN 60

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
           ATVPSFLTSNFLLT+S+RNPNRRIGIYYD+LHVYAIYRNQQITLRTIIPRFYQGHKDVNV
Sbjct: 61  ATVPSFLTSNFLLTISSRNPNRRIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFVSGTSVPVAPFISSALNQDR+AGALM+LVKIDGKVRWKVGSFITGRYQFHANCPVV
Sbjct: 121 WSPFVSGTSVPVAPFISSALNQDRNAGALMILVKIDGKVRWKVGSFITGRYQFHANCPVV 180

Query: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           INFGAYPA GDGS+VQYNVKYQVVQRCDVSV
Sbjct: 181 INFGAYPANGDGSMVQYNVKYQVVQRCDVSV 211

[Close]

BLAST of Lsi03G018290 vs. ExPASy TrEMBL
Match: A0A0A0LB20 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G779770 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.6e-112
Identity = 204/211 (96.68%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTF+LQDVTVYAFN
Sbjct: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFFLQDVTVYAFN 60

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
           ATVPSFLTSNFLLTVS+RNPNRRIGIYYD+LHVYAIYRNQQITLRTIIPRFYQGHKDVNV
Sbjct: 61  ATVPSFLTSNFLLTVSSRNPNRRIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFVSGTSVPVAPFISS LNQDR+AGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV
Sbjct: 121 WSPFVSGTSVPVAPFISSELNQDRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180

Query: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           INFGAYPA GDGSIVQYNVKYQVVQ+CDVSV
Sbjct: 181 INFGAYPANGDGSIVQYNVKYQVVQKCDVSV 211

[Close]

BLAST of Lsi03G018290 vs. ExPASy TrEMBL
Match: A0A6J1G5B0 (NDR1/HIN1-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111450912 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.9e-103
Identity = 185/211 (87.68%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           MAYDCEKHCK KRKKL+KLIGAIIGIFI LVL TILI+WAVLRPTKPTF LQDVTVYAFN
Sbjct: 1   MAYDCEKHCKNKRKKLVKLIGAIIGIFIVLVLFTILIIWAVLRPTKPTFVLQDVTVYAFN 60

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
           ATVPSFLTSNFLLTV++RNPNRRIGIYYDDL VYA+YRNQQITLRTIIP FYQGHKDVNV
Sbjct: 61  ATVPSFLTSNFLLTVTSRNPNRRIGIYYDDLRVYAVYRNQQITLRTIIPGFYQGHKDVNV 120

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFVSGT+VPVAPFISSALNQDR AGAL+LLVK++G+VRWKVG+FITGRY  HANCP  
Sbjct: 121 WSPFVSGTAVPVAPFISSALNQDRSAGALLLLVKLEGRVRWKVGNFITGRYHLHANCPAA 180

Query: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           INFG YP+  DGSIVQYNVKYQVVQRCDVSV
Sbjct: 181 INFGGYPSPSDGSIVQYNVKYQVVQRCDVSV 211

[Close]

BLAST of Lsi03G018290 vs. NCBI nr
Match: KAA0043819.1 (NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 415.6 bits (1067), Expect = 2.5e-112
Identity = 202/211 (95.73%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           MAYDCEKHCKKKRKKLIKLIGAIIG+FIFLVLLTILIVWAVLRPTKPTF+LQDVTVYAFN
Sbjct: 69  MAYDCEKHCKKKRKKLIKLIGAIIGVFIFLVLLTILIVWAVLRPTKPTFFLQDVTVYAFN 128

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
           ATVPSFLTSNFLLT+S+RNPNRRIGIYYD+LHVYAIYRNQQITLRTIIPRFYQGHKDVNV
Sbjct: 129 ATVPSFLTSNFLLTISSRNPNRRIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNV 188

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFVSGTSVPVAPFISSALNQDR+AGALM+LVKIDGKVRWKVGSFITGRYQFHANCPVV
Sbjct: 189 WSPFVSGTSVPVAPFISSALNQDRNAGALMILVKIDGKVRWKVGSFITGRYQFHANCPVV 248

Query: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           INFGAYPA GDGS+VQYNVKYQVVQRCDVSV
Sbjct: 249 INFGAYPANGDGSMVQYNVKYQVVQRCDVSV 279

[Close]

BLAST of Lsi03G018290 vs. NCBI nr
Match: XP_008442910.2 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >TYK25313.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 415.6 bits (1067), Expect = 2.5e-112
Identity = 202/211 (95.73%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           MAYDCEKHCKKKRKKLIKLIGAIIG+FIFLVLLTILIVWAVLRPTKPTF+LQDVTVYAFN
Sbjct: 1   MAYDCEKHCKKKRKKLIKLIGAIIGVFIFLVLLTILIVWAVLRPTKPTFFLQDVTVYAFN 60

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
           ATVPSFLTSNFLLT+S+RNPNRRIGIYYD+LHVYAIYRNQQITLRTIIPRFYQGHKDVNV
Sbjct: 61  ATVPSFLTSNFLLTISSRNPNRRIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFVSGTSVPVAPFISSALNQDR+AGALM+LVKIDGKVRWKVGSFITGRYQFHANCPVV
Sbjct: 121 WSPFVSGTSVPVAPFISSALNQDRNAGALMILVKIDGKVRWKVGSFITGRYQFHANCPVV 180

Query: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           INFGAYPA GDGS+VQYNVKYQVVQRCDVSV
Sbjct: 181 INFGAYPANGDGSMVQYNVKYQVVQRCDVSV 211

[Close]

BLAST of Lsi03G018290 vs. NCBI nr
Match: XP_004136510.1 (NDR1/HIN1-like protein 1 [Cucumis sativus])

HSP 1 Score: 415.2 bits (1066), Expect = 3.3e-112
Identity = 204/211 (96.68%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTF+LQDVTVYAFN
Sbjct: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFFLQDVTVYAFN 60

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
           ATVPSFLTSNFLLTVS+RNPNRRIGIYYD+LHVYAIYRNQQITLRTIIPRFYQGHKDVNV
Sbjct: 61  ATVPSFLTSNFLLTVSSRNPNRRIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFVSGTSVPVAPFISS LNQDR+AGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV
Sbjct: 121 WSPFVSGTSVPVAPFISSELNQDRNAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180

Query: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           INFGAYPA GDGSIVQYNVKYQVVQ+CDVSV
Sbjct: 181 INFGAYPANGDGSIVQYNVKYQVVQKCDVSV 211

[Close]

BLAST of Lsi03G018290 vs. NCBI nr
Match: XP_038906208.1 (NDR1/HIN1-like protein 1 [Benincasa hispida])

HSP 1 Score: 414.8 bits (1065), Expect = 4.3e-112
Identity = 203/211 (96.21%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           MAYDCEKHCKKKRKKLIKLIGAIIGI IFLVLLTILIVWAVLRPTKPTF+LQDVTVYAFN
Sbjct: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIVIFLVLLTILIVWAVLRPTKPTFFLQDVTVYAFN 60

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
           ATVPSFLTSNFLLT+S+RNPNRRIGIYYD+LHVYAIYRNQQITLRTIIPRFYQGHKDVNV
Sbjct: 61  ATVPSFLTSNFLLTISSRNPNRRIGIYYDELHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFVSGT+VPVAPFISSALNQDR+AGALMLLVKIDGKVRWKVG+FITGRYQFHANCPVV
Sbjct: 121 WSPFVSGTAVPVAPFISSALNQDRNAGALMLLVKIDGKVRWKVGNFITGRYQFHANCPVV 180

Query: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           INFGAYPATGDGSIVQYNVKYQVVQRCDVSV
Sbjct: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 211

[Close]

BLAST of Lsi03G018290 vs. NCBI nr
Match: XP_022946929.1 (NDR1/HIN1-like protein 1 [Cucurbita moschata] >XP_023540735.1 NDR1/HIN1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.0 bits (985), Expect = 8.2e-103
Identity = 185/211 (87.68%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           MAYDCEKHCK KRKKL+KLIGAIIGIFI LVL TILI+WAVLRPTKPTF LQDVTVYAFN
Sbjct: 1   MAYDCEKHCKNKRKKLVKLIGAIIGIFIVLVLFTILIIWAVLRPTKPTFVLQDVTVYAFN 60

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
           ATVPSFLTSNFLLTV++RNPNRRIGIYYDDL VYA+YRNQQITLRTIIP FYQGHKDVNV
Sbjct: 61  ATVPSFLTSNFLLTVTSRNPNRRIGIYYDDLRVYAVYRNQQITLRTIIPGFYQGHKDVNV 120

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFVSGT+VPVAPFISSALNQDR AGAL+LLVK++G+VRWKVG+FITGRY  HANCP  
Sbjct: 121 WSPFVSGTAVPVAPFISSALNQDRSAGALLLLVKLEGRVRWKVGNFITGRYHLHANCPAA 180

Query: 181 INFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           INFG YP+  DGSIVQYNVKYQVVQRCDVSV
Sbjct: 181 INFGGYPSPSDGSIVQYNVKYQVVQRCDVSV 211

[Close]

BLAST of Lsi03G018290 vs. TAIR 10
Match: AT3G11660.1 (NDR1/HIN1-like 1 )

HSP 1 Score: 232.6 bits (592), Expect = 2.8e-61
Identity = 116/211 (54.98%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 4   DCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFNAT- 63
           DCE H   +RK + ++  +II + +F++ LTIL++WA+L+P+KP F LQD TVYAFN + 
Sbjct: 3   DCENHGHSRRKLIRRIFWSIIFV-LFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSG 62

Query: 64  -VPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNVW 123
             P+ LTSNF +T+S+RNPN +IGIYYD L VYA YR+QQIT  T IP  YQGHKDV++W
Sbjct: 63  NPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIW 122

Query: 124 SPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVI 183
           SPFV GTSVP+APF   +L+ D+D G ++L+++ DG+VRWKVG+FITG+Y  H  CP  I
Sbjct: 123 SPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYI 182

Query: 184 NFGAYPATGDGSIVQYN-VKYQVVQRCDVSV 212
           NFG      +G IV  N VKY     C VSV
Sbjct: 183 NFG---NKANGVIVGDNAVKYTFTTSCSVSV 209

[Close]

BLAST of Lsi03G018290 vs. TAIR 10
Match: AT3G52470.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 229.9 bits (585), Expect = 1.8e-60
Identity = 118/212 (55.66%), Postives = 148/212 (69.81%), Query Frame = 0


Query: 1   MAYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFN 60
           M+ DC  H   K   + KL  AII  FI +VL+TI +VW +LRPTKP F LQD TVYAFN
Sbjct: 1   MSKDCGNHGGGKEVVVRKLCAAIIA-FIVIVLITIFLVWVILRPTKPRFVLQDATVYAFN 60

Query: 61  ATVPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNV 120
            + P+ LTSNF +T+++RNPN +IGIYYD LHVYA Y NQQITLRT IP  YQGHK+VNV
Sbjct: 61  LSQPNLLTSNFQVTIASRNPNSKIGIYYDRLHVYATYMNQQITLRTAIPPTYQGHKEVNV 120

Query: 121 WSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVV 180
           WSPFV GT+VP+AP+ S AL +++D G + L+++ DG VRWKV + ITG+Y  H  C   
Sbjct: 121 WSPFVYGTAVPIAPYNSVALGEEKDRGFVGLMIRADGTVRWKVRTLITGKYHIHVRCQAF 180

Query: 181 INFGAYPATGDGSIVQYN-VKYQVVQRCDVSV 212
           IN G   A   G +V  N VKY +  +C V+V
Sbjct: 181 INLGNKAA---GVLVGDNAVKYTLANKCSVNV 208

[Close]

BLAST of Lsi03G018290 vs. TAIR 10
Match: AT3G44220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 224.9 bits (572), Expect = 5.9e-59
Identity = 110/208 (52.88%), Postives = 149/208 (71.63%), Query Frame = 0


Query: 4   DCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFNATV 63
           +CE H   + +K+ K IGA++  F+  VL  + +VWA+L P  P F LQD T+YAFN + 
Sbjct: 5   ECEHH-HDEDEKMRKRIGALVLGFLAAVLFVVFLVWAILHPHGPRFVLQDATIYAFNVSQ 64

Query: 64  PSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSP 123
           P++LTSN  +T+S+RNPN +IGI+YD L +YA YRNQQ+TL T++P  YQGH DV +WSP
Sbjct: 65  PNYLTSNLQVTLSSRNPNDKIGIFYDRLDIYASYRNQQVTLATLLPATYQGHLDVTIWSP 124

Query: 124 FVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINF 183
           F+ GT+VPVAP+ S AL+QD  AG ++L +KIDG VRWKVG++++GRY+ H NCP  I  
Sbjct: 125 FLYGTTVPVAPYFSPALSQDLTAGMVLLNIKIDGWVRWKVGTWVSGRYRLHVNCPAYITL 184

Query: 184 GAYPATGDGSIVQYNVKYQVVQRCDVSV 212
             +  +GDG      VKYQ+VQRC V V
Sbjct: 185 AGH-FSGDGPA----VKYQLVQRCAVDV 206

[Close]

BLAST of Lsi03G018290 vs. TAIR 10
Match: AT2G35960.1 (NDR1/HIN1-like 12 )

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-57
Identity = 109/194 (56.19%), Postives = 141/194 (72.68%), Query Frame = 0


Query: 18  KLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFNATVPSFLTSNFLLTVSA 77
           ++ G IIG FI +VL+TI +VW +L+PTKP F LQD TVYAFN + P+ LTSNF +T+++
Sbjct: 20  RICGVIIG-FIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIAS 79

Query: 78  RNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVNVWSPFVSGTSVPVAPFIS 137
           RN N RIGIYYD LHVYA YRNQQITLRT IP  YQGHK+ NVWSPFV G SVP+APF +
Sbjct: 80  RNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNA 139

Query: 138 SALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPVVINFGAYPATGDGSIVQY 197
            AL  +++ G + L+++ DG+VRWKVG+ ITG+Y  H  C   IN  A  A G   + + 
Sbjct: 140 VALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINL-ADKAAG-VHVGEN 199

Query: 198 NVKYQVVQRCDVSV 212
            VKY ++ +C V+V
Sbjct: 200 AVKYMLINKCSVNV 210

[Close]

BLAST of Lsi03G018290 vs. TAIR 10
Match: AT5G06330.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-54
Identity = 110/212 (51.89%), Postives = 146/212 (68.87%), Query Frame = 0


Query: 2   AYDCEKHCKKKRKKLIKLIGAIIGIFIFLVLLTILIVWAVLRPTKPTFYLQDVTVYAFNA 61
           ++D    C +      K++   I I + L+L+ IL+VWA+L+P+KP F LQD TV+ FN 
Sbjct: 8   SHDSHSSCNR------KIVIWTISIILLLILVVILLVWAILQPSKPRFVLQDATVFNFNV 67

Query: 62  T--VPSFLTSNFLLTVSARNPNRRIGIYYDDLHVYAIYRNQQITLRTIIPRFYQGHKDVN 121
           +   P+ LTSNF  T+S+RNPN +IGIYYD L VYA YR+QQITL + +   YQGHK+VN
Sbjct: 68  SGNPPNLLTSNFQFTLSSRNPNDKIGIYYDRLDVYASYRSQQITLPSPMLTTYQGHKEVN 127

Query: 122 VWSPFVSGTSVPVAPFISSALNQDRDAGALMLLVKIDGKVRWKVGSFITGRYQFHANCPV 181
           VWSPFV G SVPVAP+ +  L+QD  +GA+ML++ +DG+VRWKVGSFITG+Y  H  C  
Sbjct: 128 VWSPFVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVRWKVGSFITGKYHLHVRCHA 187

Query: 182 VINFGAYPATGDGSIVQYNVKYQVVQRCDVSV 212
           +INFG+  A   G IV    KY + + C VSV
Sbjct: 188 LINFGSSAA---GVIVG---KYMLTETCSVSV 207

The following BLAST results are available for this feature:

BLAST of Lsi03G018290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRN0	4.0e-60	54.98	NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1	[more]
Q9SJ54	2.0e-56	56.19	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1	[more]
Q9FI03	4.4e-35	39.67	NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1	[more]
Q9SJ52	2.7e-16	32.93	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]
Q9FNH6	9.6e-14	29.61	NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1	[more]

BLAST of Lsi03G018290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRJ4	1.2e-112	95.73	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3DNV1	1.2e-112	95.73	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B6T7	1.2e-112	95.73	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103486673 PE=4 SV=1	[more]
A0A0A0LB20	1.6e-112	96.68	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G779770 PE=4 ...	[more]
A0A6J1G5B0	3.9e-103	87.68	NDR1/HIN1-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111450912 PE=4 SV=1	[more]

BLAST of Lsi03G018290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043819.1	2.5e-112	95.73	NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_008442910.2	2.5e-112	95.73	PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >TYK25313.1 NDR1/HIN1-like p...	[more]
XP_004136510.1	3.3e-112	96.68	NDR1/HIN1-like protein 1 [Cucumis sativus]	[more]
XP_038906208.1	4.3e-112	96.21	NDR1/HIN1-like protein 1 [Benincasa hispida]	[more]
XP_022946929.1	8.2e-103	87.68	NDR1/HIN1-like protein 1 [Cucurbita moschata] >XP_023540735.1 NDR1/HIN1-like pro...	[more]

BLAST of Lsi03G018290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11660.1	2.8e-61	54.98	NDR1/HIN1-like 1	[more]
AT3G52470.1	1.8e-60	55.66	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G44220.1	5.9e-59	52.88	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G35960.1	1.5e-57	56.19	NDR1/HIN1-like 12	[more]
AT5G06330.1	1.5e-54	51.89	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 74..177 e-value: 3.7E-13 score: 49.9
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 6..211
None	No IPR available	PANTHER	PTHR31415:SF107	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED	coord: 6..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G018290.1	Lsi03G018290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma