Lsi03G014410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G014410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	myosin-4-like isoform X3
Location	chr03: 25358269 .. 25359372 (+)
RNA-Seq Expression	Lsi03G014410
Synteny	Lsi03G014410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTGATCGGTTGGTTAGTTTTCTCGACGTAACTAATCGTTGATTTCCAGGTCCAGACGGTTTACTCTTCCTTTATAATTTCACTTCCTCATTTTCCTTCTCTCTGTTTCTTACCTACATTGATACTGATATTCTCAATTTCCATATACCACTACAGCAAAATTAGTAAAGAGCAAATCATGAGCACAAGATCATTGGTGCTATCTGAAAATCAAAAGATGCTTTTCTCCCTAATCAACGAGTACGTGGATGAAAAAAAGCAAGAAGGTATTTGTATGCAAGAAGGGATGTTAAATCCCTAGAAAATGTTCTTTTCATAATGCTAGCACTTTTTACTGTATTCCGATCATATTTTATTTTTTTTCCTGAAAGGTGATTGTCTTGTTGAATATTGGTGTTTGTAGTAGAATTTATGTTGATTAGGAGGTATTTCTATGCAAGAACAAATGTTAAAATCATAATTCTAGCAATTATTACTGTATTTGATCCGATTTGTTTTGGAAAGGCAGTCTGATTGAGTATTGGCGATTCAAGCGGAATTTTAGGTTTTATAAGGAGGTATTTATATGCAAGAACAATGTTGGATCCCTGGAAAATATTATACTCGAAATGCTAGCAATCAGATGATTACCTTTAGGAAACAAGTTTGATCAAATCATATTCGTGGTTGTACCAGAATTTATTTTGATAAGAACTGTGTAGCGAATTATATTTATCATGAAATTTGACGATGCAATTTCTTAATTCCTTCGTTTCTTGAAAACTAGAGCAAAGAGTTGTTGTTTTGAAGAAGAGGGTTGAAGAACTGCGATCTGAGCTTGAAGCCACAAATGCGGAACTCGAAAATGTAAAGCGCGGTAAAGAAACCACTGAACAGGAACTTAAAGGCTGTGAAGTTGAATTGTCTCTGAATGAAACTTCAATTCAGACTCTCGAGGTTTTATTTCTATTTCTCTTACATTTCATTTTTACAATTGCGTTACCATTAATTATTCTTTTTGCTTCTTAAATTTAATTTATCCACTCCAGGCAAGGATTTCTGTGCTACAAGGTGAAATTGCATCTGTTGGATCCGAGTTGGACTCTCTTAAGGTGCTGAGTTGA

mRNA sequence

GGTTGATCGGTTGGTTAGTTTTCTCGACGTAACTAATCGTTGATTTCCAGCAAAATTAGTAAAGAGCAAATCATGAGCACAAGATCATTGGTGCTATCTGAAAATCAAAAGATGCTTTTCTCCCTAATCAACGAGTACGTGGATGAAAAAAAGCAAGAAGAGCAAAGAGTTGTTGTTTTGAAGAAGAGGGTTGAAGAACTGCGATCTGAGCTTGAAGCCACAAATGCGGAACTCGAAAATGTAAAGCGCGGTAAAGAAACCACTGAACAGGAACTTAAAGGCTGTGAAGTTGAATTGTCTCTGAATGAAACTTCAATTCAGACTCTCGAGGCAAGGATTTCTGTGCTACAAGGTGAAATTGCATCTGTTGGATCCGAGTTGGACTCTCTTAAGGTGCTGAGTTGA

Coding sequence (CDS)

ATGAGCACAAGATCATTGGTGCTATCTGAAAATCAAAAGATGCTTTTCTCCCTAATCAACGAGTACGTGGATGAAAAAAAGCAAGAAGAGCAAAGAGTTGTTGTTTTGAAGAAGAGGGTTGAAGAACTGCGATCTGAGCTTGAAGCCACAAATGCGGAACTCGAAAATGTAAAGCGCGGTAAAGAAACCACTGAACAGGAACTTAAAGGCTGTGAAGTTGAATTGTCTCTGAATGAAACTTCAATTCAGACTCTCGAGGCAAGGATTTCTGTGCTACAAGGTGAAATTGCATCTGTTGGATCCGAGTTGGACTCTCTTAAGGTGCTGAGTTGA

Protein sequence

MSTRSLVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRGKETTEQELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLKVLS

Homology

[Close]

BLAST of Lsi03G014410 vs. ExPASy TrEMBL
Match: A0A6J1F7L7 (uncharacterized protein LOC111441601 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111441601 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 6   LVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRGKETTE 65
           + LSENQK+  SLINEY  EK Q EQ VVVLKKR EELRSELE  N ELENVKR KETTE
Sbjct: 12  MALSENQKLFLSLINEYAAEKSQGEQSVVVLKKRTEELRSELEVANVELENVKRVKETTE 71

Query: 66  QELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLKVL 110
           QELKGCEVELSLNET+IQTLEARISVLQGEIASVGSELDSLKV+
Sbjct: 72  QELKGCEVELSLNETAIQTLEARISVLQGEIASVGSELDSLKVV 115

[Close]

BLAST of Lsi03G014410 vs. ExPASy TrEMBL
Match: A0A6J1F1R4 (uncharacterized protein LOC111441601 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441601 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 6   LVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRGKETTE 65
           + LSENQK+  SLINEY  EK Q EQ VVVLKKR EELRSELE  N ELENVKR KETTE
Sbjct: 12  MALSENQKLFLSLINEYAAEKSQGEQSVVVLKKRTEELRSELEVANVELENVKRVKETTE 71

Query: 66  QELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLKVL 110
           QELKGCEVELSLNET+IQTLEARISVLQGEIASVGSELDSLKV+
Sbjct: 72  QELKGCEVELSLNETAIQTLEARISVLQGEIASVGSELDSLKVV 115

[Close]

BLAST of Lsi03G014410 vs. ExPASy TrEMBL
Match: A0A6J1F7L8 (myosin-4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441601 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 6   LVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRGKETTE 65
           + LSENQK+  SLINEY  EK Q EQ VVVLKKR EELRSELE  N ELENVKR KETTE
Sbjct: 12  MALSENQKLFLSLINEYAAEKSQGEQSVVVLKKRTEELRSELEVANVELENVKRVKETTE 71

Query: 66  QELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLKVL 110
           QELKGCEVELSLNET+IQTLEARISVLQGEIASVGSELDSLKV+
Sbjct: 72  QELKGCEVELSLNETAIQTLEARISVLQGEIASVGSELDSLKVV 115

[Close]

BLAST of Lsi03G014410 vs. ExPASy TrEMBL
Match: A0A6J1F7M3 (uncharacterized protein LOC111441601 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111441601 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 6   LVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRGKETTE 65
           + LSENQK+  SLINEY  EK Q EQ VVVLKKR EELRSELE  N ELENVKR KETTE
Sbjct: 12  MALSENQKLFLSLINEYAAEKSQGEQSVVVLKKRTEELRSELEVANVELENVKRVKETTE 71

Query: 66  QELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLKVL 110
           QELKGCEVELSLNET+IQTLEARISVLQGEIASVGSELDSLKV+
Sbjct: 72  QELKGCEVELSLNETAIQTLEARISVLQGEIASVGSELDSLKVV 115

[Close]

BLAST of Lsi03G014410 vs. ExPASy TrEMBL
Match: A0A6J1F2P5 (myosin-4-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111441601 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 6   LVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRGKETTE 65
           + LSENQK+  SLINEY  EK Q EQ VVVLKKR EELRSELE  N ELENVKR KETTE
Sbjct: 12  MALSENQKLFLSLINEYAAEKSQGEQSVVVLKKRTEELRSELEVANVELENVKRVKETTE 71

Query: 66  QELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLKVL 110
           QELKGCEVELSLNET+IQTLEARISVLQGEIASVGSELDSLKV+
Sbjct: 72  QELKGCEVELSLNETAIQTLEARISVLQGEIASVGSELDSLKVV 115

[Close]

BLAST of Lsi03G014410 vs. NCBI nr
Match: XP_038905387.1 (uncharacterized protein LOC120091435 isoform X2 [Benincasa hispida])

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 92/107 (85.98%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MSTRSLVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRG 60
           MSTRS+VLSENQK+  SLI EY  EK+QEEQR+VVLKKR+EEL+SELEATN ELENVK  
Sbjct: 1   MSTRSMVLSENQKLFLSLIKEYTTEKQQEEQRIVVLKKRIEELQSELEATNVELENVKHA 60

Query: 61  KETTEQELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLK 108
           KETTEQELKGCEVELSLN+TSIQTLEARISVLQGEIASVGSELDSLK
Sbjct: 61  KETTEQELKGCEVELSLNDTSIQTLEARISVLQGEIASVGSELDSLK 107

[Close]

BLAST of Lsi03G014410 vs. NCBI nr
Match: XP_038905386.1 (uncharacterized protein LOC120091435 isoform X1 [Benincasa hispida])

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 92/107 (85.98%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MSTRSLVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRG 60
           MSTRS+VLSENQK+  SLI EY  EK+QEEQR+VVLKKR+EEL+SELEATN ELENVK  
Sbjct: 1   MSTRSMVLSENQKLFLSLIKEYTTEKQQEEQRIVVLKKRIEELQSELEATNVELENVKHA 60

Query: 61  KETTEQELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLK 108
           KETTEQELKGCEVELSLN+TSIQTLEARISVLQGEIASVGSELDSLK
Sbjct: 61  KETTEQELKGCEVELSLNDTSIQTLEARISVLQGEIASVGSELDSLK 107

[Close]

BLAST of Lsi03G014410 vs. NCBI nr
Match: XP_022934416.1 (uncharacterized protein LOC111441601 isoform X2 [Cucurbita moschata])

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-33
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 6   LVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRGKETTE 65
           + LSENQK+  SLINEY  EK Q EQ VVVLKKR EELRSELE  N ELENVKR KETTE
Sbjct: 12  MALSENQKLFLSLINEYAAEKSQGEQSVVVLKKRTEELRSELEVANVELENVKRVKETTE 71

Query: 66  QELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLKVL 110
           QELKGCEVELSLNET+IQTLEARISVLQGEIASVGSELDSLKV+
Sbjct: 72  QELKGCEVELSLNETAIQTLEARISVLQGEIASVGSELDSLKVV 115

[Close]

BLAST of Lsi03G014410 vs. NCBI nr
Match: XP_022934415.1 (myosin-4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-33
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 6   LVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRGKETTE 65
           + LSENQK+  SLINEY  EK Q EQ VVVLKKR EELRSELE  N ELENVKR KETTE
Sbjct: 12  MALSENQKLFLSLINEYAAEKSQGEQSVVVLKKRTEELRSELEVANVELENVKRVKETTE 71

Query: 66  QELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLKVL 110
           QELKGCEVELSLNET+IQTLEARISVLQGEIASVGSELDSLKV+
Sbjct: 72  QELKGCEVELSLNETAIQTLEARISVLQGEIASVGSELDSLKVV 115

[Close]

BLAST of Lsi03G014410 vs. NCBI nr
Match: XP_022934418.1 (uncharacterized protein LOC111441601 isoform X4 [Cucurbita moschata] >XP_022934419.1 uncharacterized protein LOC111441601 isoform X4 [Cucurbita moschata])

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-33
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 6   LVLSENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRGKETTE 65
           + LSENQK+  SLINEY  EK Q EQ VVVLKKR EELRSELE  N ELENVKR KETTE
Sbjct: 12  MALSENQKLFLSLINEYAAEKSQGEQSVVVLKKRTEELRSELEVANVELENVKRVKETTE 71

Query: 66  QELKGCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLKVL 110
           QELKGCEVELSLNET+IQTLEARISVLQGEIASVGSELDSLKV+
Sbjct: 72  QELKGCEVELSLNETAIQTLEARISVLQGEIASVGSELDSLKVV 115

[Close]

BLAST of Lsi03G014410 vs. TAIR 10
Match: AT3G28370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink). )

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-22
Identity = 57/98 (58.16%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 10  ENQKMLFSLINEYVDEKKQEEQRVVVLKKRVEELRSELEATNAELENVKRGKETTEQELK 69
           + QK L SLI ++  E+ + EQRVV LKKR+E L+SE+EA N+E+E  KR KE  E+EL 
Sbjct: 5   DTQKQLLSLIRDFTSERSRGEQRVVGLKKRIEILQSEVEAANSEVEKAKRIKEVAEEELN 64

Query: 70  GCEVELSLNETSIQTLEARISVLQGEIASVGSELDSLK 108
           G EVELSLN+ +IQ+LEARIS+LQ E+ ++GSE+D+LK
Sbjct: 65  GYEVELSLNDATIQSLEARISLLQDEVTTIGSEVDALK 102

The following BLAST results are available for this feature:

BLAST of Lsi03G014410 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G014410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7L7	1.3e-33	83.65	uncharacterized protein LOC111441601 isoform X4 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F1R4	1.3e-33	83.65	uncharacterized protein LOC111441601 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F7L8	1.3e-33	83.65	myosin-4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441601 PE=4 SV=1	[more]
A0A6J1F7M3	1.3e-33	83.65	uncharacterized protein LOC111441601 isoform X5 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F2P5	1.3e-33	83.65	myosin-4-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111441601 PE=4 SV=1	[more]

BLAST of Lsi03G014410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905387.1	1.8e-37	85.98	uncharacterized protein LOC120091435 isoform X2 [Benincasa hispida]	[more]
XP_038905386.1	1.8e-37	85.98	uncharacterized protein LOC120091435 isoform X1 [Benincasa hispida]	[more]
XP_022934416.1	2.7e-33	83.65	uncharacterized protein LOC111441601 isoform X2 [Cucurbita moschata]	[more]
XP_022934415.1	2.7e-33	83.65	myosin-4-like isoform X1 [Cucurbita moschata]	[more]
XP_022934418.1	2.7e-33	83.65	uncharacterized protein LOC111441601 isoform X4 [Cucurbita moschata] >XP_0229344...	[more]

BLAST of Lsi03G014410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28370.1	1.3e-22	58.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..74
None	No IPR available	GENE3D	1.20.5.340		coord: 4..108 e-value: 3.1E-7 score: 32.5
None	No IPR available	PANTHER	PTHR36001	CTAGE FAMILY PROTEIN-RELATED	coord: 3..108
None	No IPR available	SUPERFAMILY	57997	Tropomyosin	coord: 22..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G014410.1	Lsi03G014410.1	mRNA