Lsi03G013750 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G013750
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Peptide deformylase
Location	chr03: 24698273 .. 24705817 (-)
RNA-Seq Expression	Lsi03G013750
Synteny	Lsi03G013750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTCTCTCTATTCTACCTAGAACTATATCTCAGTTCTAGCTCTTTTATTGTAACTGGATCAGTGGTTTTTTTTTTTGGGGGGGTCGCTATGGTGGCTTCAAGGCTCTTAAGCTTGCAAACTGTCGAGCTTTATTATAGACCGGGGAGGCATAAAGAAATGATGGATTCATATCGTGTGATGCATACATACATAACATCAGCAGTGACCCATAATTATAGTGAACAATGTATAAACTTCTTGGATATTGTGTCTGGATCAGCAAGTCAGAGCTTCTGTCTGTTGCAAGAGTTTTATCAAACCACTTTGAAAGCCCTTGAAGAGCAAAGAATGAGGTAAGAAAATGATTCTACTTTTACCATTTATTGCATTCTTTAATGAAGTAGCCTTGTGTTCTGTTGCTCTTTTGTGGTATAGAGGCTTTGATTCAAAACTAATTTAAATCTCTGCAAGATTTGGTTTGATATTGGTGAACATGGTCGTATGATTAAGTTAGCTTTCTTTTTTTTCCTGAAAGAGAATATTAACCTCTAAATTTTGAAGGAACAACACAAGTCCTATCAAAGAGAAGACGGTACAAATGATCAAAAGAAAGGAAGTCAACTTCTGGAGGTATGTACAATTAAGATTTAAAAGTATGCTAAGACTTCAGGCGGATTGTCTCGTGGTATTAGTCGAGGTGCGTGTAAATTGGCCTAGACACTCACAGATAAAAAAAGTAGTATATTGAGACTAAAAAAACAAAAAGCTCAAGGTAACGATTATCTAGCATTCTTGTGCATTCCATTCTGAGTTGCATGATATTGTGTAATTATAAGTTATTTATGGTGCTAGCGTTTCTTGCCAAACCGAGCATAGCTCAATTGACATACATTATTAACATCACTTCCTACCACTCTAGAAGTCCTATTCCTTGGCCAAAATTGATCTATAGCATAAAATTTTAGTTTTCTTCTTAATGTGGTGAGACATAAAACTGAGGAGACGAAACTCTTGAAAGATCTAGTTTAAGCCACAGACGTAACAAAGATATTTTTGCAGCTTGTTGTAAGCCCTTATCTTCTGTATTAAGATCTCCCAACATAATTAATGCTGGAGAATGAGATACTTGAGTTTGAGAAAAATTCTCAAGGTAACTGTGAGAAAGAGAAGTATATGTATGCATTTTTCTGGCTCTCTTCCCCTTCCTCCCTCCCCGGTTCGGTTTCGACACGATGGCTTTTGATTTATTCTTTCTTTTTACAGAGTGATAGAAAAACAATCATGTGATGCTTTCATTGGGAATTACATTCAAGATCCAGAACTCAAGGATTACTCAAACTTCTTATCAAGCCTTACACAAGAATTCGAATTCTATTTATATATCGAAGGCGACAGCTTTAGGTTCGGTTCGTGTCTTTTTCCTATCCCTTTCTGAAACGAACTTTCACAATTTCTTGATATCTGGTGTGTGGGTTGTGATTTGTGAATGTGGTGTTAATTCCCCCACCTTCCAAGAGTTTATGGTTGACGTTGAACAAAACTTTGTTTTGGTACTTAATGGTTTGAAAGGAATGCAAGGATTTTCAGGGATGTTTTCTCATCTCTCAATTGCATGCATTGTATTGTGTAAGCATAAACAATCATTTTTTAGATTATCTGGAAATGAAAACAATCGTTGTATTTGATGTTTTTAGATATGTATTTAGTAGTAGATTTAGAAATTGAATTCTAATTTAAACAATTGTTTAAAATATGTTTGTTACTATATTTATAAATCATAATACTAGATGTAGTTACTTCCTAAATATTAGTTGACAATAAATTTATTATTAATATATTTATGTTAAAAAAAATTGTATAACTATTATTTTGTAATGTTATATATTTTAGAGTTGTTTTCAAAATAGAAAAAATATTAAACTATTTATAAATATAGAAAAATTTCACTGTATATCAGATAGAGAAATTGATAGATTGCGATAGAATCTATCGCATTGTGATAGAAATCTATCGTGGACTATCGCGGATAGATAGTGAAATTTTTCTATACTTGTAAATAGTTTGATATTTTTTTCATTTATAATAATTTTCCTATATTTTATAATACATTACATAATTCATATTTTAATTTTTTTTAAAAAAATGAGTTAAGTTTATAACGTGACATACGAGTATTTCTAAATATTTTTATCTTTATTTAATATAATTTTGTATTTTAAAATTTAAAATTCAAAATCTAGATACAATGAAAACATAAAAATGTTGTTCAGAATTCGAGTTGTCTGCTAAATACATATTTGTTGAAGAGTTTTTTTTTTGTATAGATAACCCATTCACATGGTCTTTATAATTAATGACCCGCTTCCCACAAATATATGAAACCTAGCATTTGCTTATGTCAAAGCGCATTCCTAATGCATTACGTTATAAAATGCATATAGTTTGTTGTATTTTTCCCCTGTATTCGATAGGCCTTTGAACTTTAAATATGTATAATAAATTATTGATTTTTTTTTTTATTTTGTAACATATTCAAGAAAAATTTAACTTAATTGATACATTATATTTAATATCTAATTTTGTAGTAGGATGCTAAATTTTGAATAATTTGTTTGGCAGGTATGTCAAAGGTTTTAATATCGAATATGTCACAGGTTTATTAGGACACTACAATTAAAAATTTAGAGACCTATTAAACATGAGGTTGAAAGTTGAAGATCTAATTTTTTTTAAAAAATAATGATAAAAGAATGATCTATTAGACATTTTTTAAAAGTTTAAATTTTGTTATTGGAAACAAAATTAAATTAAAAAAATAGAGACTAAATAGATATAAACATGAAAGTTTATAAACTAAATTTGTAATTTCACTTTTCATTTATTTTTCTTTTTTTGGTAGGTTAAATCCTCCTCAGTTTATTTGAATTATAATATTTTTAAACAATAAAACTTGAAAATGATAAGTTTCAATAATAATTAAAATACTAAACATAACAAATACTTCCTAACAAATTAAATAATTTTTAATTTTCAATTTTCAATTTCGTCTCAATATCTTAAAATTTTCAATTCCACGTTCCATAAATAACTTATTAACAAATTTTGGTTGGTTAAAGTAGAATTTGGATTGACCCAACTCAACTCGAATTACATGTGTATTAATGAAAAATATATATACTTCTGTTTGTTTAAAGTTTGATTACTTTGTATTGATAAATTTATAATTTTTTAATTTTTTTTTTTTTAGAATTGTTATTATGTTTATCTTCATTTAAAGTTTGTAATATCATAGATATTTGGTATTTAATATTTGAATTTTATGAGATTTTAGCTAGTCGTATGTTTTGTAGATAAATTTACGTTTTAAATTAGAAGGGAAAAAAAGTTATAACTCGACCACCTAACTCAAATTTTAAGAGTTGGGTTGGAGACTTTATTCAGGTCTTTTAGATTGTCAATCCAACCAACCCAAATTTTTGGATTGGTAAAAAAATATTCAACCCAACCTATGTGTACATGCCTTTCTTTTCTCTTTATTTCTATTTGTGTCTCACTATTTTCTTCATTTTACAATTAAACCCCAAAATAATTTCCAATTATTTCTCTAATCTTCAGCAAAATTACACATTACGGCACAACTTTTAGCCACAGCCTTCTCCTTGGCAAAAGCTTGTGAGATCATTATTCAACAACAGGCGTCCCTTGTCTCAGGTCTGCTTCTCACCGGTCCACCGTCCGCGGCCGTTCTGGCCAATTTCTCGCCGCCATGGCTTACGCTACTCGATTACACCTTTCTCTCCCACACGCTCTTCCTACTGTATCCCGCCGGTTGGCGCTTCCCGCCGTTTTCCGGCGGCTGACCAGTTTTCCCTCAACCGGAAAGTTCTTCTCCCATTCGAGTAAGTTCAGGCCTCCGTCGACTCTAGTTTACGCGCAGGCCAAGCGAGGTTTCTCTGCCAAAGAAGACGATGTAGCTTCGTGTAAGCTCAAACCTCAAATTTCGTTTTGCAACTTGTAGTGCTATCTCTTTTCTATTGTCATTTCTTCAATTTTTCACATAGGTTTATTTAATTTTGCTAATAAAGTTGTGGTTTTTTAGCTGTTGATCTTGAATTTGAGGCACCGCTCAAAATTGTGGAATATCCGGACTCAATACTTAGAGCAAAGAATAAGCGTATCGATTCCTTTGATGATAATCTGAAGAAGTTGGTGTACGAAATGTTTGATGTAATGTATAAGTAAGTTTCTGAATTATTTTTTTGTTCCAATGTCTTCTTCCAAATCTTCATTGCCTCTGGTAATTGAGTGCCTTTACTTTTATCATTTCATGAAAGAATGATGAAATCTTTAGTTTAAGGATAAACGTTCTAAAAATGTTCCTAGCACTCTTCTCCTTCACTTGTGAGTTTCAAAATTAGCACGAAATCCAACCATTAGACTACCGACACAGTTACAAGATATGAACACAGAAACTAGTACCAGTCTAAGACCATGTTAAACTTTTATTAAACTAAAAGACTAACGACGTGTTTGAGAGTGATTTTATAAATAGTGGTTATAGTAAAAATGATTTGTTTACAAGTGATTTTCATATATTCATTTGGATGTTTAGTTTTACACTTTAAACGCAATTTTTTGTATAATTAAAATTGATTTTCAATGATTCAAAGCATGATTGAGAGTGATTTTTAACATGACAAAAGTGATTTTAACTATTTCAAAATTACTCTCAACTGGTGGCCACTTACCTAGGATTTATACAAAGTGTTGTAGAGTCAAGCAGGTTGTCTCGTGAGATTAGTTGAGCTGTACACTACGCCTAAACACTCACAAATATATATATATATATATATATATATATATATATATATATAAACATGTCATAAGCTAATAGGCAAGAACATGTTCAATCTTTTTCAATAAAATTACCATGAACTTTTGTATTTTCGATCTTTTATTGTTAGCTGAATCTGTTCTTACTGGATGATCTATGAAAAGCTTTTACCATGCATGAATGATGATTTCTGAGTTAGAGCCATTATTACCTTGTTATTTACAGGAAAGTGAACAATACTTGTTGGCTTCATTGTCCACAGAACTGATGGTATTGGGCTCTCAGCACCTCAAGTGGGAGTTAATGTTCAACTAATGGTATTTAATCCAGTCGGTGAACGTGGTGAAGGTGAGGAAATTGTTCTTGTGAACCCTAGAGTTTACAGATATTCCAAGAAAACTGTACTCTTTAATGAAGGTTGCTTATCGTTCCCGAGGATATATGCTGATGTAGAGGTATTGTACTATTGTTGTTTACTGGCTCTTATCTCTCACTGCCCGGTGCCTACACTTTCTAGTTTAATGCTCATTAAGGATGGCGCCAAGTATCTTTTTCTGAACTCGAAATAATGTTTTCTTGGCTAATCTAAATTCCAATTGGCTAAGTATTTGGTATGTTTTCAGCCAAAGCTTGCAAAAGATGAGTTTGTTCTAATATAGGGTGTTCGTAGTTTGTCAAGTTGGTTTAAATTCTCTTTGACTGCTACCTCCTTCTAAAGCTTACTACACCTTCTCCTTGAATGCCTACTGAAAGTCAAACTCAAGGTTGATACTATTTTGAAGTTTAACTTACAAGTTTAATCTCGGAACATTTTCAGAGTTTTTTCTTGTAGGTCTCTAAACTTTGGTCTCTAAATTTTAATTTTATGTCTTATACGTCATTAAACATTAGAAGTGTTTATGTCTTTGAACTTTTAATTGTCTCATGGATTTCATAGACATTTTTAATAATTCACATACCTCATAAACACAAAATTAAAATGTCAGAGTTTTATTAGATTGAAAATTCAATTTTGTGGCTAATATGCTGGGGTGTTTTAGGAATTGTCCTCTAGATCAGACATATTTATTCTATGCATTTTTTCTGTTAGACATGGATTTCGTAGACATTTTTTCTGTTAGATAGTTTTTCAATTTCAGGAACTTATTAGACACAACCCGGGACTAAACTTATACTTTCACCTATATTGGATACTGGTCAGGCCAATTAGATGTTCTTCTAATGCTTTCTGGGAATTGAAATTTTAACATAGTTTCTCTAGTTGCGAAACGATGCTTGTTTTTAAGGACCACACAATTTCTAGCTGCCAAATTCTGTTCTTTATTCTTTGAGTTGTGATTGTGATGAGCTAGTTCATTCTTTGGAAATTGCAGAGACCAGAATCAGTTAAGATCGATGCACGAGACATCAATGGTACAAGGTTCATGGTCAACTTATCAGGTCTTCCTGCAAGAGTGTTCCAGCATGAATTTGACCATTTGCAGGTCTTTTAATTAGTACAAGATTTAAGTTATTATACACGACATTCACTTTTACAACGTTTAATTTAGCTGTGTCACACACATTCTTCCCCACAAACTCTGTTTTCAGCAACATTGCTCAAGTGACATTCTAGCAGTGCATGATTATGTTGGTCTGGATCCTGTGATAATATCCACTAATCATTTGGGTTAGTTCATATTTTTTTTTCTAAGTGAACTGTTAATTTTGCAGGGAATTTTGTTCTTTGATAGAATGACGGATGAAGTAGTTGATACCATTCGCCCTCAGCTGCAGGTGAGTGGCCCCCTGTACATTGTTTCATCTTCTATATGATCCAAAGAAATATCCTTGAACAATAGGGAGAGGCATATTCTAATAATTTTTTAACTTTTTCTAATAATGGTCGAAAAAACCATAATGGATGGCATAGTGGTCAAGTGGAGTCGATCTAAATAGCAAAGAGCTTAAAAGGAATGAGTTCAAGGCATGATCATTACCTAGCTAAGATTTATTATCCTACTAATTTCATGGGCAGCCAAATATAGTAAGGTTAGGCAGTTGTCCCATGAGAACTGAGAATAGTCAATTTGCGTGTAAGTTTGTCCCAAGTGTATATAAAATTCACCAGTCTAGTGACACAAAATATTTCATTAGACATAAAATTTAAATTTATATTTAACAACTCAATTAATTTTGAAATTTTGAAATTTATTAGGATATCTCAAACACAAAATTCAAAATTTAATGACATATTAGACGCTTTTAAAAGTTCAGCGACTAAGTAGATACAAACTTTAAAGTTCACAACTAAACTTAACCTCGGAAATAAAATTCAAAAAGTGATTTTTCCAGATTGAAAATGAATTGAGTTAAGATGTTCCTTATTGACTATTGATGCAGGCCTTAGAAAAGAAGTACGAAGATAAAACTGGATTACCAAGTCCTGAAAGAATAGAGAACTTCAGAACAAGGAAGGTTGCTGCTGGTTTCGGAAAATCATGATCATAGATTATGAATATGAATGCCTACTAAATTTAATGAATTGTATGATATAAAGTAATTTGATTCTGTTCGGCTTTGTTAGATATTATATCAAGTTTGAATCTACCTATATCTTAAAATTTTGGGTTAATTGGTGATTTAATATGGTATCAGAGCAAGTTGCTTCAAGATGTTCTGGATTCAAGTCCGTATTGTTGTTTTCTCTCCAATTAATATCTATTTTCACTTGCTTGGCTCTTCTT

mRNA sequence

ATGTTTCTCTCTCTATTCTACCTAGAACTATATCTCAGTTCTAGCTCTTTTATTGTAACTGGATCAGTGGTTTTTTTTTTTGGGGGGGTCGCTATGGTGGCTTCAAGGCTCTTAAGCTTGCAAACTGTCGAGCTTTATTATAGACCGGGGAGGCATAAAGAAATGATGGATTCATATCGTGTGATGCATACATACATAACATCAGCAGTGACCCATAATTATAGTGAACAATGTATAAACTTCTTGGATATTGTGTCTGGATCAGCAAGTCAGAGCTTCTGTCTGTTGCAAGAGTTTTATCAAACCACTTTGAAAGCCCTTGAAGAGCAAAGAATGAGAGTGATAGAAAAACAATCATGTGATGCTTTCATTGGGAATTACATTCAAGATCCAGAACTCAAGGATTACTCAAACTTCTTATCAAGCCTTACACAAGAATTCGAATTCTATTTATATATCGAAGGCGACAGCTTTAGGTCTGCTTCTCACCGGTCCACCGTCCGCGGCCGTTCTGGCCAATTTCTCGCCGCCATGGCTTACGCTACTCGATTACACCTTTCTCTCCCACACGCTCTTCCTACTGTATCCCGCCGGTTGGCGCTTCCCGCCGTTTTCCGGCGGCTGACCAGTTTTCCCTCAACCGGAAAGTTCTTCTCCCATTCGAGTAAGTTCAGGCCTCCGTCGACTCTAGTTTACGCGCAGGCCAAGCGAGGTTTCTCTGCCAAAGAAGACGATGTAGCTTCGTCTGTTGATCTTGAATTTGAGGCACCGCTCAAAATTGTGGAATATCCGGACTCAATACTTAGAGCAAAGAATAAGCGTATCGATTCCTTTGATGATAATCTGAAGAAGTTGGTGTACGAAATGTTTGATGTAATGTATAAAACTGATGGTATTGGGCTCTCAGCACCTCAAGTGGGAGTTAATGTTCAACTAATGGTATTTAATCCAGTCGGTGAACGTGGTGAAGGTGAGGAAATTGTTCTTGTGAACCCTAGAGTTTACAGATATTCCAAGAAAACTGTACTCTTTAATGAAGGTTGCTTATCGTTCCCGAGGATATATGCTGATGTAGAGAGACCAGAATCAGTTAAGATCGATGCACGAGACATCAATGGTACAAGGTTCATGGTCAACTTATCAGGTCTTCCTGCAAGAGTGTTCCAGCATGAATTTGACCATTTGCAGGGAATTTTGTTCTTTGATAGAATGACGGATGAAGTAGTTGATACCATTCGCCCTCAGCTGCAGGCCTTAGAAAAGAAGTACGAAGATAAAACTGGATTACCAAGTCCTGAAAGAATAGAGAACTTCAGAACAAGGAAGGTTGCTGCTGGTTTCGGAAAATCATGATCATAGATTATGAATATGAATGCCTACTAAATTTAATGAATTGTATGATATAAAGTAATTTGATTCTGTTCGGCTTTGTTAGATATTATATCAAGTTTGAATCTACCTATATCTTAAAATTTTGGGTTAATTGGTGATTTAATATGGTATCAGAGCAAGTTGCTTCAAGATGTTCTGGATTCAAGTCCGTATTGTTGTTTTCTCTCCAATTAATATCTATTTTCACTTGCTTGGCTCTTCTT

Coding sequence (CDS)

ATGTTTCTCTCTCTATTCTACCTAGAACTATATCTCAGTTCTAGCTCTTTTATTGTAACTGGATCAGTGGTTTTTTTTTTTGGGGGGGTCGCTATGGTGGCTTCAAGGCTCTTAAGCTTGCAAACTGTCGAGCTTTATTATAGACCGGGGAGGCATAAAGAAATGATGGATTCATATCGTGTGATGCATACATACATAACATCAGCAGTGACCCATAATTATAGTGAACAATGTATAAACTTCTTGGATATTGTGTCTGGATCAGCAAGTCAGAGCTTCTGTCTGTTGCAAGAGTTTTATCAAACCACTTTGAAAGCCCTTGAAGAGCAAAGAATGAGAGTGATAGAAAAACAATCATGTGATGCTTTCATTGGGAATTACATTCAAGATCCAGAACTCAAGGATTACTCAAACTTCTTATCAAGCCTTACACAAGAATTCGAATTCTATTTATATATCGAAGGCGACAGCTTTAGGTCTGCTTCTCACCGGTCCACCGTCCGCGGCCGTTCTGGCCAATTTCTCGCCGCCATGGCTTACGCTACTCGATTACACCTTTCTCTCCCACACGCTCTTCCTACTGTATCCCGCCGGTTGGCGCTTCCCGCCGTTTTCCGGCGGCTGACCAGTTTTCCCTCAACCGGAAAGTTCTTCTCCCATTCGAGTAAGTTCAGGCCTCCGTCGACTCTAGTTTACGCGCAGGCCAAGCGAGGTTTCTCTGCCAAAGAAGACGATGTAGCTTCGTCTGTTGATCTTGAATTTGAGGCACCGCTCAAAATTGTGGAATATCCGGACTCAATACTTAGAGCAAAGAATAAGCGTATCGATTCCTTTGATGATAATCTGAAGAAGTTGGTGTACGAAATGTTTGATGTAATGTATAAAACTGATGGTATTGGGCTCTCAGCACCTCAAGTGGGAGTTAATGTTCAACTAATGGTATTTAATCCAGTCGGTGAACGTGGTGAAGGTGAGGAAATTGTTCTTGTGAACCCTAGAGTTTACAGATATTCCAAGAAAACTGTACTCTTTAATGAAGGTTGCTTATCGTTCCCGAGGATATATGCTGATGTAGAGAGACCAGAATCAGTTAAGATCGATGCACGAGACATCAATGGTACAAGGTTCATGGTCAACTTATCAGGTCTTCCTGCAAGAGTGTTCCAGCATGAATTTGACCATTTGCAGGGAATTTTGTTCTTTGATAGAATGACGGATGAAGTAGTTGATACCATTCGCCCTCAGCTGCAGGCCTTAGAAAAGAAGTACGAAGATAAAACTGGATTACCAAGTCCTGAAAGAATAGAGAACTTCAGAACAAGGAAGGTTGCTGCTGGTTTCGGAAAATCATGA

Protein sequence

MFLSLFYLELYLSSSSFIVTGSVVFFFGGVAMVASRLLSLQTVELYYRPGRHKEMMDSYRVMHTYITSAVTHNYSEQCINFLDIVSGSASQSFCLLQEFYQTTLKALEEQRMRVIEKQSCDAFIGNYIQDPELKDYSNFLSSLTQEFEFYLYIEGDSFRSASHRSTVRGRSGQFLAAMAYATRLHLSLPHALPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAKRGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQLQALEKKYEDKTGLPSPERIENFRTRKVAAGFGKS

Homology

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BLAST of Lsi03G013750 vs. ExPASy Swiss-Prot
Match: Q9FV54 (Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1B PE=2 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 2.4e-94
Identity = 173/260 (66.54%), Postives = 205/260 (78.85%), Query Frame = 0


Query: 193 PTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAKRGFSAKE--DDVASSV 252
           P +SR  +   +   L  + S    F  +S  +PP   VYAQA+R  S+K   D++A+  
Sbjct: 20  PLLSRNSSPSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQARRVLSSKTKGDEIATPA 79

Query: 253 DLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKTDGIGLSAPQVGVNV 312
           DL F  PLKIVEYPD ILRAKNKRID+FD NLKKLV EMFD+MYKTDGIGLSAPQVG+NV
Sbjct: 80  DLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNV 139

Query: 313 QLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARD 372
           QLMVFN  GERGEGEEIVLVNPRV RYS++ + + EGCLSFP I+ DV+RPESVK+DA+D
Sbjct: 140 QLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQD 199

Query: 373 INGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQLQALEKKYEDKTGLP 432
           INGTRF ++LS LPARVFQHEFDHLQG+LFFD+MTDEV+DTIR +L ALEKKYED+TGLP
Sbjct: 200 INGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEKKYEDRTGLP 259

Query: 433 SPERIENFRTRKVAAGFGKS 451
           +PE I   + +K A GFGKS
Sbjct: 260 TPESINTRKIKKAAVGFGKS 279

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BLAST of Lsi03G013750 vs. ExPASy Swiss-Prot
Match: Q9FUZ2 (Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDF1B PE=1 SV=2)

HSP 1 Score: 335.5 bits (859), Expect = 9.3e-91
Identity = 170/259 (65.64%), Postives = 205/259 (79.15%), Query Frame = 0


Query: 198 RLALPAVFRRLTS-------FPSTGKFFSHSSKFRPPSTLVYAQAKRGFSAKEDDVASSV 257
           R+ LP + RR T+         ST  F S  ++  P ++ V A+ KR  S K+D VAS+ 
Sbjct: 15  RILLPVLSRRATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR-VSRKDDKVASAT 74

Query: 258 DLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKTDGIGLSAPQVGVNV 317
           D++FE PLKIVEYPD ILRAKNKRID FD+NLK LV  MFDVMYKTDGIGLSAPQVG+NV
Sbjct: 75  DVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNV 134

Query: 318 QLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARD 377
           QLMVFNP GE GEG+EIVLVNP++ +YS K V F+EGCLSFP IYA+V RP+SVKIDARD
Sbjct: 135 QLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARD 194

Query: 378 INGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQLQALEKKYEDKTGLP 437
           I G RF ++LS LPAR+FQHE+DHL+G+LFFDRMTD+V+D+IR +L+ALEKKYE+KTGLP
Sbjct: 195 ITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEEKTGLP 254

Query: 438 SPERIENFRTRKVAAGFGK 450
           SPER+E  + RK   GFGK
Sbjct: 255 SPERVEARQKRKAGVGFGK 272

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BLAST of Lsi03G013750 vs. ExPASy Swiss-Prot
Match: Q5VNN5 (Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDF1B PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 3.3e-80
Identity = 147/236 (62.29%), Postives = 186/236 (78.81%), Query Frame = 0


Query: 222 SKFRPPSTLVYAQAKRGFS--------AKEDDVASSVDLEFEAPLKIVEYPDSILRAKNK 281
           S+    + L  A+A+RGF         A+++D A++ DL+FE PLK+V+YPD ILRA+NK
Sbjct: 34  SRMGSVAPLAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNK 93

Query: 282 RIDSFDDNLKKLVYEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPR 341
           RI++FDDNL+ L  EMFDVMYKTDGIGLSAPQVGVNVQLMVFNP G +GEGEEIVLVNP 
Sbjct: 94  RINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPV 153

Query: 342 VYRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFD 401
           VY+ SK+ +++ EGCLSFP IYA+V RP++VKIDA+D+ G +  V LSGL ARVFQHEFD
Sbjct: 154 VYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFD 213

Query: 402 HLQGILFFDRMTDEVVDTIRPQLQALEKKYEDKTGLPSPERIENFRTRKVAAGFGK 450
           HLQGILFFDRM+ +V++++R  L+ LEKKYE+ TGL SPE IEN++ RK    F +
Sbjct: 214 HLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESIENYKGRKDLISFSR 269

[Close]

BLAST of Lsi03G013750 vs. ExPASy Swiss-Prot
Match: Q7UHZ5 (Peptide deformylase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) OX=243090 GN=def PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.8e-33
Identity = 72/175 (41.14%), Postives = 103/175 (58.86%), Query Frame = 0


Query: 257 PLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKTDGIGLSAPQVGVNVQLMVFN 316
           PL I+ +P   LR  ++ I   D  LK +  EM D+MY+ DG+GL+A QV + +++ V N
Sbjct: 2   PLSIIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVAN 61

Query: 317 PVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARDINGTRF 376
           P G+R EGE  V++NP + R  K      EGCLS P +Y  V+RP++V++   D+ G   
Sbjct: 62  PTGKRDEGESWVILNPEIDR-PKGNDTAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEI 121

Query: 377 MVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQLQALEKKYEDKTGLPS 432
              L G  ARV QHE DHL GI+FFDR+ +E +  +   L+  +  YE K G  S
Sbjct: 122 NQVLDGFMARVVQHEVDHLDGIMFFDRIGEEGLRDLEGHLEEFKTDYESKQGTGS 175

[Close]

BLAST of Lsi03G013750 vs. ExPASy Swiss-Prot
Match: Q7NIF5 (Peptide deformylase 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=def2 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-32
Identity = 70/160 (43.75%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 257 PLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKTDGIGLSAPQVGVNVQLMVFN 316
           PL I    D +LR  +K+I   +D ++KL  +M   MY  DGIGL+APQVGVN +++V +
Sbjct: 16  PLAIHTLGDRVLRQGSKQISGINDEVRKLAQQMLQTMYSADGIGLAAPQVGVNKRMIVVD 75

Query: 317 PVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARDINGTRF 376
              E      +VL+NP + ++S    +  EGCLS P IYADV RPE V    RD+NG   
Sbjct: 76  IDPENAARPPLVLINPLIKQFSSDLAVDQEGCLSVPSIYADVRRPERVVATYRDLNGRPV 135

Query: 377 MVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
            +  +GL AR  QHE DHL G+LF DR+ +++   + PQL
Sbjct: 136 TLEATGLLARCIQHEIDHLDGVLFVDRVENQI--ALAPQL 173

[Close]

BLAST of Lsi03G013750 vs. ExPASy TrEMBL
Match: A0A6J1JF23 (Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111486320 PE=3 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 1.4e-134
Identity = 246/275 (89.45%), Postives = 260/275 (94.55%), Query Frame = 0


Query: 178 MAYATRLHLSLPHA-LPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAK 237
           MAY  RLH+SLPHA LPT+SRR ALPAV RRL+ F STG+  S+SSKFRPP+TLVYAQAK
Sbjct: 1   MAYTARLHVSLPHALLPTLSRRSALPAVLRRLSRFSSTGRLLSNSSKFRPPTTLVYAQAK 60

Query: 238 RGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKT 297
           RGFS KEDDVASS DLEFEAPL+IVEYPD ILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 298 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYA 357
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+VYRYSKKT+LFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTILFNEGCLSFPRIYA 180

Query: 358 DVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
           DV+RPESVKIDARDI+GTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEV+DTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 418 QALEKKYEDKTGLPSPERIENFRTR-KVAAGFGKS 451
           QALEKKYED+TGLPSPERIEN RTR KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Lsi03G013750 vs. ExPASy TrEMBL
Match: A0A6J1EN89 (Peptide deformylase OS=Cucurbita moschata OX=3662 GN=LOC111435101 PE=3 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 3.2e-134
Identity = 247/275 (89.82%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 178 MAYATRLHLSLPHA-LPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAK 237
           MAY  RLHLSLPHA LPT+SRR ALPAV RRL+ F STG+  S+SSKFRPP+TLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPAVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 238 RGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKT 297
           RGFS KEDDVASS DLEFEAPL+IVEYPD ILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 298 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYA 357
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+VYRYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPSIYA 180

Query: 358 DVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
           DV+RPESVKIDARDI+GTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEV+DTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 418 QALEKKYEDKTGLPSPERIENFRTR-KVAAGFGKS 451
           QALEKKYED+TGLPSPERIEN RTR KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Lsi03G013750 vs. ExPASy TrEMBL
Match: A0A6J1DF55 (Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111019929 PE=3 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 6.0e-133
Identity = 246/273 (90.11%), Postives = 256/273 (93.77%), Query Frame = 0


Query: 178 MAYATRLHLSLPHA-LPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAK 237
           MAY  RLHLSL HA LP   RRLALPAVFRRL+ F ST +FFSHSSK RPPSTLVYAQAK
Sbjct: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60

Query: 238 RGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKT 297
           RGFSAKEDD A S DLEFEAPLKIVEYPD ILRAKNKRIDSFDDNLKKLV+EMFDVMYKT
Sbjct: 61  RGFSAKEDDAALSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120

Query: 298 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYA 357
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRV+RYSKKTVLFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180

Query: 358 DVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
           DVERPESVKIDARDI+GTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEV+DTIR QL
Sbjct: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240

Query: 418 QALEKKYEDKTGLPSPERIENFRT-RKVAAGFG 449
           QALEKKYE++TGLPSPERIENFRT +KVAAG+G
Sbjct: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 273

[Close]

BLAST of Lsi03G013750 vs. ExPASy TrEMBL
Match: A0A0A0LG66 (Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_3G837630 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.9e-131
Identity = 246/274 (89.78%), Postives = 256/274 (93.43%), Query Frame = 0


Query: 178 MAYATRLHLSLPHA-LPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAK 237
           MAYATRLH+SLPHA LPTVS  L+ PAVFRRL+ F ST K FSHSSKF+ PSTLVYAQAK
Sbjct: 1   MAYATRLHISLPHALLPTVSCWLSPPAVFRRLSGFSSTCKLFSHSSKFKAPSTLVYAQAK 60

Query: 238 RGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKT 297
           RGFSAKEDDVASSVDLEFEAPLKIVEYPD ILRAKNKRI SFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSAKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIGSFDDNLKKLVQEMFDVMYKT 120

Query: 298 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYA 357
           DGIGLSAPQVGVNVQLMVFN VGERGEGEEIVLVNP+VYRYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNSVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPMIYA 180

Query: 358 DVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
           DVERPES+KIDARDI+GTRFMVNLSGL ARVFQHEFDHLQG LFFDRMTDEV++TIRPQL
Sbjct: 181 DVERPESIKIDARDISGTRFMVNLSGLSARVFQHEFDHLQGTLFFDRMTDEVLETIRPQL 240

Query: 418 QALEKKYEDKTGLPSPERIENFRTRKVAAGFGKS 451
           QALEKKYED+TGLPSPERIENFR RKV AGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENFR-RKVGAGFGKS 273

[Close]

BLAST of Lsi03G013750 vs. ExPASy TrEMBL
Match: A0A1S3B8C2 (Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103487104 PE=3 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 1.1e-129
Identity = 244/274 (89.05%), Postives = 252/274 (91.97%), Query Frame = 0


Query: 178 MAYATRLHLSLPHA-LPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAK 237
           MAY TRLH+SLP A LPTVS  L+ P VFRRL+ F ST    SHSSKFR PSTLVYAQAK
Sbjct: 1   MAYTTRLHISLPRALLPTVSCWLSPPVVFRRLSGFSSTCTLISHSSKFRAPSTLVYAQAK 60

Query: 238 RGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKT 297
           RGF AKEDDVASSVDLEFEAPLKIVEYPD ILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFYAKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 298 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYA 357
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+VYRYSKKTV FNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVPFNEGCLSFPMIYA 180

Query: 358 DVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
           DVERPES+KIDARDI GTRFMVNLSGL ARVFQHEFDHLQGILFFDRMTDEV++TIRPQL
Sbjct: 181 DVERPESIKIDARDIRGTRFMVNLSGLSARVFQHEFDHLQGILFFDRMTDEVLETIRPQL 240

Query: 418 QALEKKYEDKTGLPSPERIENFRTRKVAAGFGKS 451
           QALEKKYED+TGLPSPERIENFR RKVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENFR-RKVAAGFGKS 273

[Close]

BLAST of Lsi03G013750 vs. NCBI nr
Match: XP_038904020.1 (peptide deformylase 1B, chloroplastic [Benincasa hispida])

HSP 1 Score: 509.2 bits (1310), Expect = 3.6e-140
Identity = 257/274 (93.80%), Postives = 262/274 (95.62%), Query Frame = 0


Query: 178 MAYATRLHLSLPHA-LPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAK 237
           M Y TRLHLSL HA LPTVSRRL+LPAVFRRL+ FP TGKFFSH SKFRPPST+VYAQAK
Sbjct: 1   MEYTTRLHLSLQHALLPTVSRRLSLPAVFRRLSGFPLTGKFFSHWSKFRPPSTVVYAQAK 60

Query: 238 RGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKT 297
           RGFSAKEDDVA SVDLEFEAPLKIVEYPD ILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSAKEDDVAKSVDLEFEAPLKIVEYPDKILRAKNKRIDSFDDNLKKLVREMFDVMYKT 120

Query: 298 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYA 357
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPMIYA 180

Query: 358 DVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
           DVERPESVKIDARDI+GTRFM NLSGLPARVFQHEFDHLQGILFFDRMTDEV+DTIRPQL
Sbjct: 181 DVERPESVKIDARDISGTRFMFNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRPQL 240

Query: 418 QALEKKYEDKTGLPSPERIENFRTRKVAAGFGKS 451
           QALEKKYEDKTGLPSPERIENFRTRKVAAGFGKS
Sbjct: 241 QALEKKYEDKTGLPSPERIENFRTRKVAAGFGKS 274

[Close]

BLAST of Lsi03G013750 vs. NCBI nr
Match: XP_022989167.1 (peptide deformylase 1B, chloroplastic [Cucurbita maxima])

HSP 1 Score: 489.6 bits (1259), Expect = 2.9e-134
Identity = 246/275 (89.45%), Postives = 260/275 (94.55%), Query Frame = 0


Query: 178 MAYATRLHLSLPHA-LPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAK 237
           MAY  RLH+SLPHA LPT+SRR ALPAV RRL+ F STG+  S+SSKFRPP+TLVYAQAK
Sbjct: 1   MAYTARLHVSLPHALLPTLSRRSALPAVLRRLSRFSSTGRLLSNSSKFRPPTTLVYAQAK 60

Query: 238 RGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKT 297
           RGFS KEDDVASS DLEFEAPL+IVEYPD ILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 298 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYA 357
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+VYRYSKKT+LFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTILFNEGCLSFPRIYA 180

Query: 358 DVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
           DV+RPESVKIDARDI+GTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEV+DTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 418 QALEKKYEDKTGLPSPERIENFRTR-KVAAGFGKS 451
           QALEKKYED+TGLPSPERIEN RTR KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Lsi03G013750 vs. NCBI nr
Match: XP_022928203.1 (peptide deformylase 1B, chloroplastic [Cucurbita moschata])

HSP 1 Score: 488.4 bits (1256), Expect = 6.5e-134
Identity = 247/275 (89.82%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 178 MAYATRLHLSLPHA-LPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAK 237
           MAY  RLHLSLPHA LPT+SRR ALPAV RRL+ F STG+  S+SSKFRPP+TLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPAVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 238 RGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKT 297
           RGFS KEDDVASS DLEFEAPL+IVEYPD ILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 298 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYA 357
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+VYRYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPSIYA 180

Query: 358 DVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
           DV+RPESVKIDARDI+GTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEV+DTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 418 QALEKKYEDKTGLPSPERIENFRTR-KVAAGFGKS 451
           QALEKKYED+TGLPSPERIEN RTR KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Lsi03G013750 vs. NCBI nr
Match: XP_023530509.1 (peptide deformylase 1B, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 485.7 bits (1249), Expect = 4.2e-133
Identity = 246/275 (89.45%), Postives = 258/275 (93.82%), Query Frame = 0


Query: 178 MAYATRLHLSLPHA-LPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAK 237
           MAY  RLHLSLPHA LPT+SRR ALP V RRL+ F STG+  S+SSKFRPP+TLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPTVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 238 RGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKT 297
           RGFS KEDDVASS DLEFEAPL+IVEYPD ILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 298 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYA 357
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+VYRYSKKTVLFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180

Query: 358 DVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
           DV+RPESVKIDARDI+GTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEV+DTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 418 QALEKKYEDKTGLPSPERIENFRTR-KVAAGFGKS 451
           QALEKKYED+TGL SPERIEN RTR KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLRSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Lsi03G013750 vs. NCBI nr
Match: XP_022152139.1 (peptide deformylase 1B, chloroplastic [Momordica charantia])

HSP 1 Score: 484.2 bits (1245), Expect = 1.2e-132
Identity = 246/273 (90.11%), Postives = 256/273 (93.77%), Query Frame = 0


Query: 178 MAYATRLHLSLPHA-LPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAK 237
           MAY  RLHLSL HA LP   RRLALPAVFRRL+ F ST +FFSHSSK RPPSTLVYAQAK
Sbjct: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60

Query: 238 RGFSAKEDDVASSVDLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKT 297
           RGFSAKEDD A S DLEFEAPLKIVEYPD ILRAKNKRIDSFDDNLKKLV+EMFDVMYKT
Sbjct: 61  RGFSAKEDDAALSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120

Query: 298 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYA 357
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRV+RYSKKTVLFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180

Query: 358 DVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQL 417
           DVERPESVKIDARDI+GTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEV+DTIR QL
Sbjct: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240

Query: 418 QALEKKYEDKTGLPSPERIENFRT-RKVAAGFG 449
           QALEKKYE++TGLPSPERIENFRT +KVAAG+G
Sbjct: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 273

[Close]

BLAST of Lsi03G013750 vs. TAIR 10
Match: AT5G14660.1 (peptide deformylase 1B )

HSP 1 Score: 335.5 bits (859), Expect = 6.6e-92
Identity = 170/259 (65.64%), Postives = 205/259 (79.15%), Query Frame = 0


Query: 198 RLALPAVFRRLTS-------FPSTGKFFSHSSKFRPPSTLVYAQAKRGFSAKEDDVASSV 257
           R+ LP + RR T+         ST  F S  ++  P ++ V A+ KR  S K+D VAS+ 
Sbjct: 15  RILLPVLSRRATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR-VSRKDDKVASAT 74

Query: 258 DLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKTDGIGLSAPQVGVNV 317
           D++FE PLKIVEYPD ILRAKNKRID FD+NLK LV  MFDVMYKTDGIGLSAPQVG+NV
Sbjct: 75  DVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNV 134

Query: 318 QLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARD 377
           QLMVFNP GE GEG+EIVLVNP++ +YS K V F+EGCLSFP IYA+V RP+SVKIDARD
Sbjct: 135 QLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARD 194

Query: 378 INGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQLQALEKKYEDKTGLP 437
           I G RF ++LS LPAR+FQHE+DHL+G+LFFDRMTD+V+D+IR +L+ALEKKYE+KTGLP
Sbjct: 195 ITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEEKTGLP 254

Query: 438 SPERIENFRTRKVAAGFGK 450
           SPER+E  + RK   GFGK
Sbjct: 255 SPERVEARQKRKAGVGFGK 272

[Close]

BLAST of Lsi03G013750 vs. TAIR 10
Match: AT5G14660.2 (peptide deformylase 1B )

HSP 1 Score: 335.5 bits (859), Expect = 6.6e-92
Identity = 170/259 (65.64%), Postives = 205/259 (79.15%), Query Frame = 0


Query: 198 RLALPAVFRRLTS-------FPSTGKFFSHSSKFRPPSTLVYAQAKRGFSAKEDDVASSV 257
           R+ LP + RR T+         ST  F S  ++  P ++ V A+ KR  S K+D VAS+ 
Sbjct: 15  RILLPVLSRRATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR-VSRKDDKVASAT 74

Query: 258 DLEFEAPLKIVEYPDSILRAKNKRIDSFDDNLKKLVYEMFDVMYKTDGIGLSAPQVGVNV 317
           D++FE PLKIVEYPD ILRAKNKRID FD+NLK LV  MFDVMYKTDGIGLSAPQVG+NV
Sbjct: 75  DVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNV 134

Query: 318 QLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARD 377
           QLMVFNP GE GEG+EIVLVNP++ +YS K V F+EGCLSFP IYA+V RP+SVKIDARD
Sbjct: 135 QLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARD 194

Query: 378 INGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVDTIRPQLQALEKKYEDKTGLP 437
           I G RF ++LS LPAR+FQHE+DHL+G+LFFDRMTD+V+D+IR +L+ALEKKYE+KTGLP
Sbjct: 195 ITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEEKTGLP 254

Query: 438 SPERIENFRTRKVAAGFGK 450
           SPER+E  + RK   GFGK
Sbjct: 255 SPERVEARQKRKAGVGFGK 272

[Close]

BLAST of Lsi03G013750 vs. TAIR 10
Match: AT1G15390.1 (peptide deformylase 1A )

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-20
Identity = 72/242 (29.75%), Postives = 106/242 (43.80%), Query Frame = 0


Query: 188 LPHALPTVSRRLALPAVFRRLTSFPSTGKFFSHSSKFRPPSTLVYAQAKRGFSAKEDDVA 247
           LP +     R +  P       S P +    +      P S+      K G+     +  
Sbjct: 22  LPVSAAVTCRSIRFP------VSRPGSSHLLNRKLYNLPTSSSSSLSTKAGWLLGLGEKK 81

Query: 248 SSVDLEFEAPLKIVEYPDSILRAKNKRIDSFD---DNLKKLVYEMFDVMYKTDGIGLSAP 307
             VDL      +IV   D +L  K + +D  +   + ++K++ +M  VM    G+GL+AP
Sbjct: 82  KKVDLP-----EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAP 141

Query: 308 QVGVNVQLMVFNP--------------VGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLS 367
           Q+GV ++++V                   ER   + +V+VNP +   S K  LF EGCLS
Sbjct: 142 QIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLS 201

Query: 368 FPRIYADVERPESVKIDARDINGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVVD 413
                A VER   V +   D  G R  VN SG  AR+ QHE DHL G L+ D+M      
Sbjct: 202 VDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFR 252

[Close]

BLAST of Lsi03G013750 vs. TAIR 10
Match: AT2G26990.1 (proteasome family protein )

HSP 1 Score: 96.3 bits (238), Expect = 6.7e-20
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 41  QTVELYYRPGRHKEMMDSYRVMHTYITSAVTHNYSEQCI-NFLDIVSGSASQSFCLLQEF 100
           QTV++YYR G++KEMM++Y  M TYI SAVT NYSE+CI N +D VSGSASQ+  LLQEF
Sbjct: 68  QTVKIYYRLGKYKEMMEAYTEMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNTGLLQEF 127

Query: 101 YQTTLKALEEQR 112
           YQTTLKALEE +
Sbjct: 128 YQTTLKALEEAK 139

The following BLAST results are available for this feature:

BLAST of Lsi03G013750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FV54	2.4e-94	66.54	Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1B P...	[more]
Q9FUZ2	9.3e-91	65.64	Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3...	[more]
Q5VNN5	3.3e-80	62.29	Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q7UHZ5	6.8e-33	41.14	Peptide deformylase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / ...	[more]
Q7NIF5	2.6e-32	43.75	Peptide deformylase 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX...	[more]

BLAST of Lsi03G013750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JF23	1.4e-134	89.45	Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111486320 PE=3 SV=1	[more]
A0A6J1EN89	3.2e-134	89.82	Peptide deformylase OS=Cucurbita moschata OX=3662 GN=LOC111435101 PE=3 SV=1	[more]
A0A6J1DF55	6.0e-133	90.11	Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111019929 PE=3 SV=1	[more]
A0A0A0LG66	1.9e-131	89.78	Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_3G837630 PE=3 SV=1	[more]
A0A1S3B8C2	1.1e-129	89.05	Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103487104 PE=3 SV=1	[more]

BLAST of Lsi03G013750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904020.1	3.6e-140	93.80	peptide deformylase 1B, chloroplastic [Benincasa hispida]	[more]
XP_022989167.1	2.9e-134	89.45	peptide deformylase 1B, chloroplastic [Cucurbita maxima]	[more]
XP_022928203.1	6.5e-134	89.82	peptide deformylase 1B, chloroplastic [Cucurbita moschata]	[more]
XP_023530509.1	4.2e-133	89.45	peptide deformylase 1B, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022152139.1	1.2e-132	90.11	peptide deformylase 1B, chloroplastic [Momordica charantia]	[more]

BLAST of Lsi03G013750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14660.1	6.6e-92	65.64	peptide deformylase 1B	[more]
AT5G14660.2	6.6e-92	65.64	peptide deformylase 1B	[more]
AT1G15390.1	2.3e-20	29.75	peptide deformylase 1A	[more]
AT2G26990.1	6.7e-20	69.44	proteasome family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023635	Peptide deformylase	PRINTS	PR01576	PDEFORMYLASE	coord: 287..316 score: 40.62 coord: 377..406 score: 47.28 coord: 358..376 score: 35.09 coord: 346..357 score: 57.1
IPR023635	Peptide deformylase	TIGRFAM	TIGR00079	TIGR00079	coord: 258..407 e-value: 1.4E-45 score: 152.7
IPR023635	Peptide deformylase	PFAM	PF01327	Pep_deformylase	coord: 258..406 e-value: 4.3E-48 score: 162.9
IPR023635	Peptide deformylase	PANTHER	PTHR10458	PEPTIDE DEFORMYLASE	coord: 224..424
IPR023635	Peptide deformylase	HAMAP	MF_00163	Pep_deformylase	coord: 256..419 score: 27.342833
IPR023635	Peptide deformylase	CDD	cd00487	Pep_deformylase	coord: 260..400 e-value: 3.51839E-62 score: 196.168
IPR036821	Peptide deformylase superfamily	GENE3D	3.90.45.10	Peptide deformylase	coord: 242..434 e-value: 2.2E-65 score: 221.1
IPR036821	Peptide deformylase superfamily	SUPERFAMILY	56420	Peptide deformylase	coord: 257..426
None	No IPR available	PANTHER	PTHR10458:SF2	PEPTIDE DEFORMYLASE, MITOCHONDRIAL	coord: 224..424

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G013750.1	Lsi03G013750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018206	peptidyl-methionine modification
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0042586	peptide deformylase activity