Lsi03G013740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G013740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ADP-ribosylation factor
Location	chr03: 24691718 .. 24695082 (+)
RNA-Seq Expression	Lsi03G013740
Synteny	Lsi03G013740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGGAAACTTCGGAACCGGAACGCTCTCTCTCGCATCCATTTTCACATTCAGATTTCTCACGAATTCGAGCGGTAATCAATCTTCGTATCTATCCCTTTTCATTATCCATTTCTCAATTTTGGTTCCGCAGGATCTCTGGAAGATCTTTTGTTGATCTGAAGTTGTAGATTTACGGATTCATTTTATCCTTTTTTTTTCCTGGTAGATTGTGAATTGTTTTCGTAACATTATAATGATTGTTCGTTTTTTTGGATTTTCGATTTAATTTCTCATGATATGTGAAAATCTTTCACACTTTTCGATGTTTGGATATGTTTTGTTGCTTGCCGAATCAATTTGATCATGTCAGTCGTATTGGAAATCACAATGGATTAGTTTGAAATTCTCATTGCATGGTATAAATGTCATTAGAGGATCGGCAGCGACAAAGTATTTTGGAAATTTTAATTTATTTGGTGGTTCATTGCGGTTTTACTTTTGGATTCTTCTTTTTAGGATGTTATTTTTTTGTTCATGATAATTCATTGGGTGTTAGTAGTTGGAGATCTATTTGTTTGTAATCGAAACAATTCGAAATGTTTGATTTCTGATTTTAAGTGATATTGGATGCCAGTGCTGTGAATCTGTGATTGTTGGCCAGATAGAAGGAAGCGGAAATGGGGTTGACCTTTACGAAGCTCTTCGGTAGGCTTTTCTCTAAGAAAGAGATGCGCATTTTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACGATCTTGTACAAGCTGAAGCTCGGAGAAATTGTGACCACCATTCCCACTATCGGTGAGTCTTTATCCTATAAAGTACAGTTTTTGTGGAACTTTGGAAAATGAGAACTCAGATGTATTTGACTCCTAAGAGAATGAAAGCTATGTCAATTTTCATCTTCTATAACAGCAGGCTGGAAAACCTGCAGTATTAATATGATACAGAGGGTTCCGAATTCCGATCAATTACTTTCTCATCTTCAATAACAAAACTATTGCCAACACTGGACATGACATCACAAATCCAGTGTTTTCTCAGCCTGCTAGTAACAAAATTAAGGCCAAGAACTTTGGAATCGACCAACTATCTACATCTAATTTTTGACGAAGAACAGGAAAATAAAAGGCTAAGACACACCCTAGTCAAGTAGGAAAATTAACATACATAGAACTAGAGATTTATATTTTAGTGCCCGTTTCAAATTTAAAAGAGAAAGTGTTACAATAACTTGATATAGTTCCCATCTCCAAGGTTGATGATTCAATTCCTCCCATAATTGTTGAACCCAAAAGAATAACTTGATGTAGTTCTGTGAGCAAGTGAAATTATTTCTCAGTCAAGAAACCTAATCAGAGTTTTAATTAGAGGTTCTTCAGTTCAGGTAACCTGGAGGTTGAAGGTTCAAAGCTAGGTTCATGTGGGACAAATATCTCACGAATTTGTACCCTTAACAGTCCTGATTATCAAATGTTTAGGGTCGATTACTGGTCTGCAATTTCAAGCGAACTGTGGTATTTAAGGGTTTTAAAAGAGACAAGCTAGCAAATGAACAATGAATGAGATTAAATGCTCTAGTTTTATATAGTTGCTGTGGATCATAGTATCTTTTGGATTCTCACTTTTGGGTTTCCTAAGCATATATGGATTTTCAGGCAATGAAATAATGGTGTGATTTGTGAGACTATTAGGCCTCTGCTCAATCTAATTTTAGTTCAGCCGAGTTTTCCTTCAGAGCATTACAATTGTTGCTTAATGTTTAACAATTGCCATTATGTGGAATTTTATTAAAATCCACCTTAGGGAAGTCATAGACGTAAGACTCCATTCTTTTCTCAGGATTTAATGTGGAGACTGTAGAATACAAGAACATCAGCTTTACCGTTTGGGATGTTGGTGGTCAGGACAAGGTATGCATCTCCTCTTTTCAGTAGTGAAGGAGGAGAGACAGATTCTGCTTTTAACTATATTTCAGAGACAACCAGTTCATTTTGAATTTAACACCAATATAGAAATTCACACTTTTAATTATTATTTTTCCTTCTTATTTGCACATAAAGTGGTTGATGCTTTAGTAAGTTCTAATGTTAATTTAAGAGACATCCAGTTCTTGTTCTAATGTTAATTTAACGCAGCAATTGCCATTTTCAATATTCGAGGGTTGCTGCATTTCATTTGTTATGTTTGATATGTTATATGTGAAACTCTGTAACATAAAAAACGTAATAAATTTGAATTAGCAGTAACTGAATATTGGTTCAAATTTGGTATGTTGGTGCATGTTCTTATTTTCTTAATTCGATCATATAATATATTTTTGTATTATCAAGAATAAAATACTTACATTTTCTAGAATGAGGATTGTGCATGAATATAACTGGATTATTGCTAGGGCCTTTTAGGTTTTTGCTTATGTTTTATATGTTCATAAATTCTTTAAACTAAAATTTTCATAAGAAATTATTTTGAACTATTATGTCTACTCGAAGTTTGACTGAAGTGGTTTCTTTTTGAAAGATCCGTCCACTTTGGAGGCATTACTTCCAGAATACACAGGGCCTTATCTTTGTTGTGGATAGCAATGATAGGGACCGAGTCGTAGAGGCAAGAGATGAGTTGCACAGGATGTTGAATGAGGTATGGTTGATGTTTGTAGCTTTTCACACTGCATCTTAATGAACCTAATTGGCAGTTCCCCTACTTGATGGACTATAGCTGTGTACTGGTGTATAGCTTGCTTTTGTTCCTACTGTGTCAATAATTTTCTCTATCATGCCTGATCCCTCTGCCCTCTTGTTGTTGCTATTTTATTTCTTCTAAATCCTTATTAGATTCCGCTATTCAACTTCTGTTTTGGTATACAATTTTGTGAGATACAATTTTTAGAAACTATTTTGTTGCAACTTAGCAGCAGGATTTTACTAGAGTTTGTTACAAGACAGTTAGTTCAGTTGTTGCTGCTTAGGAAGAAGATTTGCTAAATTTGGCTATCTAATTTGTTGTTTGGTTTTGATCTTCTTCCTCCCCGTGCTTTTATCAATAGCCAGAATGCTAGCTATTTGACAAGAACTGGTTTTTAGCCAGTTTCCTGTCATTAGAAAGTATGATTGATAAAGATCTCTTGTATTGCTGAGTTTCTTTCTTTCTTTCCTTTTTTTTTCTGTCCGCTTTATTAATATTGCCTAACTGGGACACTTTGTGGTATCACATAAAATGATGAATTTGGTTGCAGGATGAACTTAGAGATGCTGTTTTGCTTGTATTTGCTAACAAGCAAGATCTTCCTAATGCCATGAATGCTGCAGAAATAACTGACAAACTCGGCCTCCACTCCCTTCGCCAGCGCCACTGGTAA

mRNA sequence

AAAAAGGAAACTTCGGAACCGGAACGCTCTCTCTCGCATCCATTTTCACATTCAGATTTCTCACGAATTCGAGCGTGCTGTGAATCTGTGATTGTTGGCCAGATAGAAGGAAGCGGAAATGGGGTTGACCTTTACGAAGCTCTTCGGTAGGCTTTTCTCTAAGAAAGAGATGCGCATTTTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACGATCTTGTACAAGCTGAAGCTCGGAGAAATTGTGACCACCATTCCCACTATCGGATTTAATGTGGAGACTGTAGAATACAAGAACATCAGCTTTACCGTTTGGGATGTTGGTGGTCAGGACAAGGGCCTTATCTTTGTTGTGGATAGCAATGATAGGGACCGAGTCGTAGAGGCAAGAGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTATTTGCTAACAAGCAAGATCTTCCTAATGCCATGAATGCTGCAGAAATAACTGACAAACTCGGCCTCCACTCCCTTCGCCAGCGCCACTGGTAA

Coding sequence (CDS)

ATGGGGTTGACCTTTACGAAGCTCTTCGGTAGGCTTTTCTCTAAGAAAGAGATGCGCATTTTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACGATCTTGTACAAGCTGAAGCTCGGAGAAATTGTGACCACCATTCCCACTATCGGATTTAATGTGGAGACTGTAGAATACAAGAACATCAGCTTTACCGTTTGGGATGTTGGTGGTCAGGACAAGGGCCTTATCTTTGTTGTGGATAGCAATGATAGGGACCGAGTCGTAGAGGCAAGAGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTATTTGCTAACAAGCAAGATCTTCCTAATGCCATGAATGCTGCAGAAATAACTGACAAACTCGGCCTCCACTCCCTTCGCCAGCGCCACTGGTAA

Protein sequence

MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW

Homology

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BLAST of Lsi03G013740 vs. ExPASy Swiss-Prot
Match: Q06396 (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-69
Identity = 137/153 (89.54%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLF RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. ExPASy Swiss-Prot
Match: P51823 (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF PE=2 SV=2)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-69
Identity = 137/153 (89.54%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLF RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. ExPASy Swiss-Prot
Match: O48920 (ADP-ribosylation factor OS=Vigna unguiculata OX=3917 GN=ARF PE=2 SV=3)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-69
Identity = 137/153 (89.54%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+FTKLF RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. ExPASy Swiss-Prot
Match: P49076 (ADP-ribosylation factor OS=Zea mays OX=4577 GN=ARF1 PE=2 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 3.1e-69
Identity = 137/153 (89.54%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLF RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGL+SLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLNSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. ExPASy Swiss-Prot
Match: O48649 (ADP-ribosylation factor 1 OS=Salix bakko OX=72444 GN=ARF1 PE=2 SV=3)

HSP 1 Score: 261.9 bits (668), Expect = 4.1e-69
Identity = 137/153 (89.54%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+FTKL GRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRV EARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. ExPASy TrEMBL
Match: A0A6J1JNM1 (ADP-ribosylation factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486324 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. ExPASy TrEMBL
Match: A0A1S3B896 (ADP-ribosylation factor 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487103 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. ExPASy TrEMBL
Match: A0A6J1EJ94 (ADP-ribosylation factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111435103 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. ExPASy TrEMBL
Match: A0A5D3BNK1 (ADP-ribosylation factor 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00290 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. ExPASy TrEMBL
Match: A0A0A0LD15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G837640 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. NCBI nr
Match: XP_022152140.1 (ADP-ribosylation factor 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 268.5 bits (685), Expect = 3.3e-68
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. NCBI nr
Match: XP_008443534.1 (PREDICTED: ADP-ribosylation factor 1-like isoform X1 [Cucumis melo] >XP_008443535.1 PREDICTED: ADP-ribosylation factor 1-like isoform X1 [Cucumis melo] >XP_008443536.1 PREDICTED: ADP-ribosylation factor 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 268.5 bits (685), Expect = 3.3e-68
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. NCBI nr
Match: XP_023530507.1 (ADP-ribosylation factor 1-like [Cucurbita pepo subsp. pepo] >XP_023530508.1 ADP-ribosylation factor 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 3.3e-68
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. NCBI nr
Match: XP_022928206.1 (ADP-ribosylation factor 1-like [Cucurbita moschata] >XP_022928207.1 ADP-ribosylation factor 1-like [Cucurbita moschata] >XP_022989174.1 ADP-ribosylation factor 1-like [Cucurbita maxima] >XP_022989175.1 ADP-ribosylation factor 1-like [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 3.3e-68
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. NCBI nr
Match: KAA0053656.1 (ADP-ribosylation factor 1-like isoform X1 [Cucumis melo var. makuwa] >TYK00827.1 ADP-ribosylation factor 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 3.3e-68
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. TAIR 10
Match: AT5G14670.1 (ADP-ribosylation factor A1B )

HSP 1 Score: 263.1 bits (671), Expect = 1.3e-70
Identity = 137/153 (89.54%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL FTKLF RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. TAIR 10
Match: AT1G70490.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-70
Identity = 136/153 (88.89%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+F KLF RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. TAIR 10
Match: AT1G23490.1 (ADP-ribosylation factor 1 )

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-70
Identity = 136/153 (88.89%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+F KLF RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. TAIR 10
Match: AT1G10630.1 (ADP-ribosylation factor A1F )

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-70
Identity = 136/153 (88.89%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+F KLF RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of Lsi03G013740 vs. TAIR 10
Match: AT1G70490.3 (Ras-related small GTP-binding family protein )

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-70
Identity = 136/153 (88.89%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MGLTFTKLFGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+F KLF RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDK-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDK             GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 141
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

The following BLAST results are available for this feature:

BLAST of Lsi03G013740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06396	1.4e-69	89.54	ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g08134...	[more]
P51823	1.4e-69	89.54	ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF PE=2 S...	[more]
O48920	1.4e-69	89.54	ADP-ribosylation factor OS=Vigna unguiculata OX=3917 GN=ARF PE=2 SV=3	[more]
P49076	3.1e-69	89.54	ADP-ribosylation factor OS=Zea mays OX=4577 GN=ARF1 PE=2 SV=2	[more]
O48649	4.1e-69	89.54	ADP-ribosylation factor 1 OS=Salix bakko OX=72444 GN=ARF1 PE=2 SV=3	[more]

BLAST of Lsi03G013740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNM1	1.6e-68	91.50	ADP-ribosylation factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486324 PE=3 ...	[more]
A0A1S3B896	1.6e-68	91.50	ADP-ribosylation factor 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348710...	[more]
A0A6J1EJ94	1.6e-68	91.50	ADP-ribosylation factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111435103 PE=...	[more]
A0A5D3BNK1	1.6e-68	91.50	ADP-ribosylation factor 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0LD15	1.6e-68	91.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G837640 PE=3 SV=1	[more]

BLAST of Lsi03G013740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152140.1	3.3e-68	91.50	ADP-ribosylation factor 1-like isoform X1 [Momordica charantia]	[more]
XP_008443534.1	3.3e-68	91.50	PREDICTED: ADP-ribosylation factor 1-like isoform X1 [Cucumis melo] >XP_00844353...	[more]
XP_023530507.1	3.3e-68	91.50	ADP-ribosylation factor 1-like [Cucurbita pepo subsp. pepo] >XP_023530508.1 ADP-...	[more]
XP_022928206.1	3.3e-68	91.50	ADP-ribosylation factor 1-like [Cucurbita moschata] >XP_022928207.1 ADP-ribosyla...	[more]
KAA0053656.1	3.3e-68	91.50	ADP-ribosylation factor 1-like isoform X1 [Cucumis melo var. makuwa] >TYK00827.1...	[more]

BLAST of Lsi03G013740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14670.1	1.3e-70	89.54	ADP-ribosylation factor A1B	[more]
AT1G70490.1	3.8e-70	88.89	Ras-related small GTP-binding family protein	[more]
AT1G23490.1	3.8e-70	88.89	ADP-ribosylation factor 1	[more]
AT1G10630.1	3.8e-70	88.89	ADP-ribosylation factor A1F	[more]
AT1G70490.3	3.8e-70	88.89	Ras-related small GTP-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006689	Small GTPase superfamily, ARF/SAR type	PRINTS	PR00328	SAR1GTPBP	coord: 19..42 score: 52.45 coord: 47..71 score: 33.65
IPR006689	Small GTPase superfamily, ARF/SAR type	SMART	SM00178	sar_sub_1	coord: 1..140 e-value: 6.3E-4 score: 16.4
IPR006689	Small GTPase superfamily, ARF/SAR type	PFAM	PF00025	Arf	coord: 6..140 e-value: 7.1E-52 score: 175.4
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..140 e-value: 4.3E-81 score: 285.4
None	No IPR available	PANTHER	PTHR11711:SF391	ADP-RIBOSYLATION FACTOR	coord: 1..140
None	No IPR available	PANTHER	PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	coord: 1..140
None	No IPR available	PROSITE	PS51417	ARF	coord: 11..140 score: 16.199865
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 4..140 e-value: 2.7E-56 score: 191.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 13..140
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 16..125 e-value: 1.0E-14 score: 52.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G013740.1	Lsi03G013740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding