Lsi03G013080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G013080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Tubulin alpha chain
Location	chr03: 23891533 .. 23892164 (+)
RNA-Seq Expression	Lsi03G013080
Synteny	Lsi03G013080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCGTATCTTATTGCAGAAGTTGTTTAAAAGTGTATGATGCAAATTTTGCTGTCTTGTCTAACTGTAGACAGTAGCATGATGGGGAACTCCTCTGCAGAAATTAAAAAAAAAAAAGATTCATTCATGTTTAGCATATGATTGAGATCAAGCTATAAAGTATCATTCATCCTGAAGTAAACTTCCCCAAAGGATATTAGTTTAGTTGGTTATTTTTAGAAAAAGGTTCTTATAAATCAAGTCAAAAGTAGGGTAGGCATACATAATTTTCTAAATGTTATGCTTTGAATTAAAGTTGTGCCATCGGAATTTTCCAGGTGTCCTACTGGCTTCAAATGCGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGTGATCTCGCCAAGGTGCAGCGAGCTGTCTGTATGATAAGCAACAGCACAGCCGTTGCCGAAGTCTTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCTTTTGTCCATTGGTATGTGGGGGAGGGCATGGAGGAAGGTGAATTCTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGATTACGAGGAAGTGGGGGCCGAAGATGTCGATGAAGAGGAAGAAGGGGAAGATTATTAA

mRNA sequence

ATGGCCCTTGTGCCATCGGAATTTTCCAGGTGTCCTACTGGCTTCAAATGCGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGTGATCTCGCCAAGGTGCAGCGAGCTGTCTGTATGATAAGCAACAGCACAGCCGTTGCCGAAGTCTTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCTTTTGTCCATTGGTATGTGGGGGAGGGCATGGAGGAAGGTGAATTCTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGATTACGAGGAAGTGGGGGCCGAAGATGTCGATGAAGAGGAAGAAGGGGAAGATTATTAA

Coding sequence (CDS)

ATGGCCCTTGTGCCATCGGAATTTTCCAGGTGTCCTACTGGCTTCAAATGCGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGTGATCTCGCCAAGGTGCAGCGAGCTGTCTGTATGATAAGCAACAGCACAGCCGTTGCCGAAGTCTTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCTTTTGTCCATTGGTATGTGGGGGAGGGCATGGAGGAAGGTGAATTCTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGATTACGAGGAAGTGGGGGCCGAAGATGTCGATGAAGAGGAAGAAGGGGAAGATTATTAA

Protein sequence

MALVPSEFSRCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY

Homology

[Close]

BLAST of Lsi03G013080 vs. ExPASy Swiss-Prot
Match: O22349 (Tubulin alpha-3 chain OS=Eleusine indica OX=29674 GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.9e-49
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E +EGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEGEDY 450

[Close]

BLAST of Lsi03G013080 vs. ExPASy Swiss-Prot
Match: Q43473 (Tubulin alpha-1 chain OS=Hordeum vulgare OX=4513 GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.4e-49
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E +EG+DY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEGDDY 450

[Close]

BLAST of Lsi03G013080 vs. ExPASy Swiss-Prot
Match: P28752 (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.4e-49
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E ++GEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDENDDGEDY 450

[Close]

BLAST of Lsi03G013080 vs. ExPASy Swiss-Prot
Match: Q56WH1 (Tubulin alpha-3 chain OS=Arabidopsis thaliana OX=3702 GN=TUBA3 PE=1 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 6.4e-49
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DEE+EGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEEDEGEDY 450

[Close]

BLAST of Lsi03G013080 vs. ExPASy Swiss-Prot
Match: B9DHQ0 (Tubulin alpha-5 chain OS=Arabidopsis thaliana OX=3702 GN=TUBA5 PE=1 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 6.4e-49
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DEE+EGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEEDEGEDY 450

[Close]

BLAST of Lsi03G013080 vs. ExPASy TrEMBL
Match: A0A5D3D5F0 (Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00780 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 449

[Close]

BLAST of Lsi03G013080 vs. ExPASy TrEMBL
Match: A0A6J1I8Z7 (Tubulin alpha chain OS=Cucurbita maxima OX=3661 GN=LOC111470761 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 449

[Close]

BLAST of Lsi03G013080 vs. ExPASy TrEMBL
Match: A0A6J1IRT1 (Tubulin alpha chain OS=Cucurbita maxima OX=3661 GN=LOC111479935 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 449

[Close]

BLAST of Lsi03G013080 vs. ExPASy TrEMBL
Match: A0A6J1EX84 (Tubulin alpha chain OS=Cucurbita moschata OX=3662 GN=LOC111436987 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 449

[Close]

BLAST of Lsi03G013080 vs. ExPASy TrEMBL
Match: A0A6J1F2F1 (Tubulin alpha chain OS=Cucurbita moschata OX=3662 GN=LOC111439152 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 449

[Close]

BLAST of Lsi03G013080 vs. NCBI nr
Match: XP_022930580.1 (tubulin alpha-3 chain-like [Cucurbita moschata] >XP_022980617.1 tubulin alpha-3 chain-like [Cucurbita maxima] >XP_023526047.1 tubulin alpha-3 chain-like [Cucurbita pepo subsp. pepo] >KAG6581659.1 Tubulin alpha-3 chain, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018153.1 Tubulin alpha-3 chain [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.0 bits (528), Expect = 4.3e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 449

[Close]

BLAST of Lsi03G013080 vs. NCBI nr
Match: XP_008464962.1 (PREDICTED: tubulin alpha-3 chain-like [Cucumis melo] >XP_022932678.1 tubulin alpha-3 chain-like [Cucurbita moschata] >XP_022972128.1 tubulin alpha-3 chain-like [Cucurbita maxima] >XP_023539676.1 tubulin alpha-3 chain-like [Cucurbita pepo subsp. pepo] >KAA0057190.1 tubulin alpha-3 chain-like [Cucumis melo var. makuwa] >TYK18771.1 tubulin alpha-3 chain-like [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.3e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 449

[Close]

BLAST of Lsi03G013080 vs. NCBI nr
Match: XP_038904017.1 (tubulin alpha-5 chain-like [Benincasa hispida])

HSP 1 Score: 208.0 bits (528), Expect = 4.3e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 449

[Close]

BLAST of Lsi03G013080 vs. NCBI nr
Match: XP_022155952.1 (tubulin alpha-3 chain-like [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 5.6e-50
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAED+DEEEEGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDIDEEEEGEDY 449

[Close]

BLAST of Lsi03G013080 vs. NCBI nr
Match: XP_004141134.1 (tubulin alpha-6 chain [Cucumis sativus] >KGN59749.1 hypothetical protein Csa_001017 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 9.6e-50
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG+DY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGDDY 449

[Close]

BLAST of Lsi03G013080 vs. TAIR 10
Match: AT5G19770.1 (tubulin alpha-3 )

HSP 1 Score: 194.5 bits (493), Expect = 4.6e-50
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DEE+EGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEEDEGEDY 450

[Close]

BLAST of Lsi03G013080 vs. TAIR 10
Match: AT5G19780.1 (tubulin alpha-5 )

HSP 1 Score: 194.5 bits (493), Expect = 4.6e-50
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DEE+EGEDY
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEEDEGEDY 450

[Close]

BLAST of Lsi03G013080 vs. TAIR 10
Match: AT1G04820.1 (tubulin alpha-4 chain )

HSP 1 Score: 191.8 bits (486), Expect = 3.0e-49
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DE++EGE+Y
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450

[Close]

BLAST of Lsi03G013080 vs. TAIR 10
Match: AT1G50010.1 (tubulin alpha-2 chain )

HSP 1 Score: 191.8 bits (486), Expect = 3.0e-49
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DE++EGE+Y
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450

[Close]

BLAST of Lsi03G013080 vs. TAIR 10
Match: AT4G14960.2 (Tubulin/FtsZ family protein )

HSP 1 Score: 191.8 bits (486), Expect = 3.0e-49
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 11  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVH 70
           CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVH
Sbjct: 347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVH 406

Query: 71  WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEEGEDY 114
           WYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DE++EGE+Y
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450

The following BLAST results are available for this feature:

BLAST of Lsi03G013080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22349	2.9e-49	94.23	Tubulin alpha-3 chain OS=Eleusine indica OX=29674 GN=TUBA3 PE=2 SV=1	[more]
Q43473	6.4e-49	93.27	Tubulin alpha-1 chain OS=Hordeum vulgare OX=4513 GN=TUBA1 PE=2 SV=1	[more]
P28752	6.4e-49	93.27	Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBA1 PE=1 SV=...	[more]
Q56WH1	6.4e-49	94.23	Tubulin alpha-3 chain OS=Arabidopsis thaliana OX=3702 GN=TUBA3 PE=1 SV=2	[more]
B9DHQ0	6.4e-49	94.23	Tubulin alpha-5 chain OS=Arabidopsis thaliana OX=3702 GN=TUBA5 PE=1 SV=2	[more]

BLAST of Lsi03G013080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5F0	2.1e-50	100.00	Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G...	[more]
A0A6J1I8Z7	2.1e-50	100.00	Tubulin alpha chain OS=Cucurbita maxima OX=3661 GN=LOC111470761 PE=3 SV=1	[more]
A0A6J1IRT1	2.1e-50	100.00	Tubulin alpha chain OS=Cucurbita maxima OX=3661 GN=LOC111479935 PE=3 SV=1	[more]
A0A6J1EX84	2.1e-50	100.00	Tubulin alpha chain OS=Cucurbita moschata OX=3662 GN=LOC111436987 PE=3 SV=1	[more]
A0A6J1F2F1	2.1e-50	100.00	Tubulin alpha chain OS=Cucurbita moschata OX=3662 GN=LOC111439152 PE=3 SV=1	[more]

BLAST of Lsi03G013080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930580.1	4.3e-50	100.00	tubulin alpha-3 chain-like [Cucurbita moschata] >XP_022980617.1 tubulin alpha-3 ...	[more]
XP_008464962.1	4.3e-50	100.00	PREDICTED: tubulin alpha-3 chain-like [Cucumis melo] >XP_022932678.1 tubulin alp...	[more]
XP_038904017.1	4.3e-50	100.00	tubulin alpha-5 chain-like [Benincasa hispida]	[more]
XP_022155952.1	5.6e-50	99.03	tubulin alpha-3 chain-like [Momordica charantia]	[more]
XP_004141134.1	9.6e-50	99.03	tubulin alpha-6 chain [Cucumis sativus] >KGN59749.1 hypothetical protein Csa_001...	[more]

BLAST of Lsi03G013080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19770.1	4.6e-50	94.23	tubulin alpha-3	[more]
AT5G19780.1	4.6e-50	94.23	tubulin alpha-5	[more]
AT1G04820.1	3.0e-49	92.31	tubulin alpha-4 chain	[more]
AT1G50010.1	3.0e-49	92.31	tubulin alpha-2 chain	[more]
AT4G14960.2	3.0e-49	92.31	Tubulin/FtsZ family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 82..109
None	No IPR available	PANTHER	PTHR11588:SF373	TUBULIN ALPHA CHAIN	coord: 10..111
IPR002452	Alpha tubulin	PRINTS	PR01162	ALPHATUBULIN	coord: 86..102 score: 90.81 coord: 24..43 score: 86.34 coord: 49..65 score: 83.59 coord: 11..24 score: 93.1
IPR023123	Tubulin, C-terminal	GENE3D	1.10.287.600	Helix hairpin bin	coord: 48..113 e-value: 1.3E-32 score: 113.5
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	PFAM	PF03953	Tubulin_C	coord: 11..56 e-value: 5.1E-10 score: 39.6
IPR037103	Tubulin/FtsZ-like, C-terminal domain	GENE3D	3.30.1330.20		coord: 7..47 e-value: 1.6E-14 score: 55.6
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 10..111
IPR008280	Tubulin/FtsZ, C-terminal	SUPERFAMILY	55307	Tubulin C-terminal domain-like	coord: 11..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G013080.1	Lsi03G013080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton