Lsi03G013040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G013040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr03: 23868222 .. 23868620 (-)
RNA-Seq Expression	Lsi03G013040
Synteny	Lsi03G013040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTCGACGATTGGGAACTCATTGATTGCCATGAAGATGACGAGAAAAAGCATCGCAGTGACGACCAGAACATCGTTTTCGCTCTAAACCATACCGATCAATCTATTGTTTCTGTTTCGAAAGTTTCCGGCCAGAAATTGATCGGCGACATGAGAAAGGAGTCGGGAACCGCCGTGGAATTAGATGTGGAGGAGGAGGAAAAAGTAAATTCAAGAAGAATGAATATGGCGAATCTGGCGATGGAGAAGAGGAAACAATGGGGGAGAACGGCAATTTGTTCGGTTGGAATTGCTGTGGCGGCTACGATTTGCACTGTGTTATTGGGAAGCCATAGCCACCGCCAAGGCGGAGCTTCGCTTGTGAATAAGCGCCATTCTTTGAAGGCTGAACCCTGA

mRNA sequence

ATGGGCCTCGACGATTGGGAACTCATTGATTGCCATGAAGATGACGAGAAAAAGCATCGCAGTGACGACCAGAACATCGTTTTCGCTCTAAACCATACCGATCAATCTATTGTTTCTGTTTCGAAAGTTTCCGGCCAGAAATTGATCGGCGACATGAGAAAGGAGTCGGGAACCGCCGTGGAATTAGATGTGGAGGAGGAGGAAAAAGTAAATTCAAGAAGAATGAATATGGCGAATCTGGCGATGGAGAAGAGGAAACAATGGGGGAGAACGGCAATTTGTTCGGTTGGAATTGCTGTGGCGGCTACGATTTGCACTGTGTTATTGGGAAGCCATAGCCACCGCCAAGGCGGAGCTTCGCTTGTGAATAAGCGCCATTCTTTGAAGGCTGAACCCTGA

Coding sequence (CDS)

ATGGGCCTCGACGATTGGGAACTCATTGATTGCCATGAAGATGACGAGAAAAAGCATCGCAGTGACGACCAGAACATCGTTTTCGCTCTAAACCATACCGATCAATCTATTGTTTCTGTTTCGAAAGTTTCCGGCCAGAAATTGATCGGCGACATGAGAAAGGAGTCGGGAACCGCCGTGGAATTAGATGTGGAGGAGGAGGAAAAAGTAAATTCAAGAAGAATGAATATGGCGAATCTGGCGATGGAGAAGAGGAAACAATGGGGGAGAACGGCAATTTGTTCGGTTGGAATTGCTGTGGCGGCTACGATTTGCACTGTGTTATTGGGAAGCCATAGCCACCGCCAAGGCGGAGCTTCGCTTGTGAATAAGCGCCATTCTTTGAAGGCTGAACCCTGA

Protein sequence

MGLDDWELIDCHEDDEKKHRSDDQNIVFALNHTDQSIVSVSKVSGQKLIGDMRKESGTAVELDVEEEEKVNSRRMNMANLAMEKRKQWGRTAICSVGIAVAATICTVLLGSHSHRQGGASLVNKRHSLKAEP

Homology

[Close]

BLAST of Lsi03G013040 vs. ExPASy TrEMBL
Match: A0A0A0LG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.9e-29
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 0


Query: 1   MGLDDWELIDCHEDDEKKHRSDDQNIVFALNHTDQSIVSVSKVSGQKLIGDMRKESGTAV 60
           MGLDDWEL+DCHED +++     +N+V               +SGQKLIGD + E     
Sbjct: 1   MGLDDWELLDCHEDHDQEKSRPHENVV---------------ISGQKLIGDTKNEMEAVA 60

Query: 61  ELDVEEEEKVNSRRMNMANLAMEKRKQWGRTAICSVGIAVAATICTVLLGSHSHRQGGAS 120
           E DVEEEEKV+SR     ++AMEKRKQWGRT +CS GIAVAATIC+VLLGSHSH  GG +
Sbjct: 61  EFDVEEEEKVDSR--GGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGA 109

Query: 121 LVNKRH 127
            VNKRH
Sbjct: 121 FVNKRH 109

[Close]

BLAST of Lsi03G013040 vs. ExPASy TrEMBL
Match: A0A5D3D5E0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00740 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 69/126 (54.76%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 1   MGLDDWELIDCHEDDEKKHRSDDQNIVFALNHTDQSIVSVSKVSGQKLIGDMRKESGTAV 60
           MGLDDWEL+DCHED E+K R +++                  +SGQKLI D +KE     
Sbjct: 1   MGLDDWELLDCHEDREEKSRHENE-----------------VISGQKLIADTKKELEIVA 60

Query: 61  ELDVEEEEKVNSRRMNMANLAMEKRKQWGRTAICSVGIAVAATICTVLLGSHSHRQGGAS 120
           E +VEEEEK NSRR    ++A EK+KQ GR  +CS GIAVAATIC+VLLGSHSH  GG +
Sbjct: 61  EFEVEEEEKENSRR--GMDMATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGA 107

Query: 121 LVNKRH 127
            VNKRH
Sbjct: 121 FVNKRH 107

[Close]

BLAST of Lsi03G013040 vs. NCBI nr
Match: KGN59752.1 (hypothetical protein Csa_001232 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-28
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 0


Query: 1   MGLDDWELIDCHEDDEKKHRSDDQNIVFALNHTDQSIVSVSKVSGQKLIGDMRKESGTAV 60
           MGLDDWEL+DCHED +++     +N+V               +SGQKLIGD + E     
Sbjct: 1   MGLDDWELLDCHEDHDQEKSRPHENVV---------------ISGQKLIGDTKNEMEAVA 60

Query: 61  ELDVEEEEKVNSRRMNMANLAMEKRKQWGRTAICSVGIAVAATICTVLLGSHSHRQGGAS 120
           E DVEEEEKV+SR     ++AMEKRKQWGRT +CS GIAVAATIC+VLLGSHSH  GG +
Sbjct: 61  EFDVEEEEKVDSR--GGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGA 109

Query: 121 LVNKRH 127
            VNKRH
Sbjct: 121 FVNKRH 109

[Close]

BLAST of Lsi03G013040 vs. NCBI nr
Match: KAA0057194.1 (hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK18767.1 hypothetical protein E5676_scaffold257G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 5.6e-25
Identity = 69/126 (54.76%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 1   MGLDDWELIDCHEDDEKKHRSDDQNIVFALNHTDQSIVSVSKVSGQKLIGDMRKESGTAV 60
           MGLDDWEL+DCHED E+K R +++                  +SGQKLI D +KE     
Sbjct: 1   MGLDDWELLDCHEDREEKSRHENE-----------------VISGQKLIADTKKELEIVA 60

Query: 61  ELDVEEEEKVNSRRMNMANLAMEKRKQWGRTAICSVGIAVAATICTVLLGSHSHRQGGAS 120
           E +VEEEEK NSRR    ++A EK+KQ GR  +CS GIAVAATIC+VLLGSHSH  GG +
Sbjct: 61  EFEVEEEEKENSRR--GMDMATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGA 107

Query: 121 LVNKRH 127
            VNKRH
Sbjct: 121 FVNKRH 107

The following BLAST results are available for this feature:

BLAST of Lsi03G013040 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G013040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG95	6.9e-29	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1	[more]
A0A5D3D5E0	2.7e-25	54.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lsi03G013040 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59752.1	1.4e-28	57.14	hypothetical protein Csa_001232 [Cucumis sativus]	[more]
KAA0057194.1	5.6e-25	54.76	hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK1876...	[more]

BLAST of Lsi03G013040 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G013040.1	Lsi03G013040.1	mRNA