Lsi03G012580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G012580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	R3h domain containing protein, putative
Location	chr03: 23204410 .. 23204634 (-)
RNA-Seq Expression	Lsi03G012580
Synteny	Lsi03G012580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGGAACTCAAGCTTCAGTTAACTATGGGCCTCATCCAAGTCCTGTTGTAAGCCCTTTCTGCGCAATGGGTTTACACCAGGCATCTAGAGATGCTTCTTATGAGCAGTGGCAGAGTGCTGCAATGATGTATGCCCATTCCTACAACCAGCTCAGGCACTCTGCTTTTCAGGCCCCATTCTGTCAGCAACCCCTCAGCTTTGACTATTCTCAAAACCATTAG

mRNA sequence

ATGCTAGGAACTCAAGCTTCAGTTAACTATGGGCCTCATCCAAGTCCTGTTGTAAGCCCTTTCTGCGCAATGGGTTTACACCAGGCATCTAGAGATGCTTCTTATGAGCAGTGGCAGAGTGCTGCAATGATGTATGCCCATTCCTACAACCAGCTCAGGCACTCTGCTTTTCAGGCCCCATTCTGTCAGCAACCCCTCAGCTTTGACTATTCTCAAAACCATTAG

Coding sequence (CDS)

ATGCTAGGAACTCAAGCTTCAGTTAACTATGGGCCTCATCCAAGTCCTGTTGTAAGCCCTTTCTGCGCAATGGGTTTACACCAGGCATCTAGAGATGCTTCTTATGAGCAGTGGCAGAGTGCTGCAATGATGTATGCCCATTCCTACAACCAGCTCAGGCACTCTGCTTTTCAGGCCCCATTCTGTCAGCAACCCCTCAGCTTTGACTATTCTCAAAACCATTAG

Protein sequence

MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH

Homology

[Close]

BLAST of Lsi03G012580 vs. ExPASy TrEMBL
Match: A0A0A0LFE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G817720 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAP 60
           M GTQASVNYGPHPSPVVSPFCAMGL+QASRDASYEQWQSAAMMYAHSYNQ RHSAFQAP
Sbjct: 281 MPGTQASVNYGPHPSPVVSPFCAMGLNQASRDASYEQWQSAAMMYAHSYNQFRHSAFQAP 340

Query: 61  FCQQPLSFDYSQNH 75
           FCQQPLSFDYSQNH
Sbjct: 341 FCQQPLSFDYSQNH 354

[Close]

BLAST of Lsi03G012580 vs. ExPASy TrEMBL
Match: A0A1S3B8A9 (uncharacterized protein LOC103486865 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486865 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-32
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1   MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAP 60
           M GTQASVNYGPHPS VVSPFCAMGL+QASRDASYEQWQ+AAMMYAHSYNQ RHSAFQAP
Sbjct: 281 MPGTQASVNYGPHPSSVVSPFCAMGLNQASRDASYEQWQNAAMMYAHSYNQFRHSAFQAP 340

Query: 61  FCQQPLSFDYSQNH 75
           FCQQPLSFDYSQNH
Sbjct: 341 FCQQPLSFDYSQNH 354

[Close]

BLAST of Lsi03G012580 vs. ExPASy TrEMBL
Match: A0A6J1DGF4 (uncharacterized protein LOC111019846 OS=Momordica charantia OX=3673 GN=LOC111019846 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.3e-32
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 3   GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC 62
           GTQASV+YGPHPSPVVSPFC +GL+Q SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC
Sbjct: 286 GTQASVSYGPHPSPVVSPFCTVGLNQTSRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC 345

Query: 63  QQPLSFDYSQNH 75
           QQPLSFDYSQNH
Sbjct: 346 QQPLSFDYSQNH 357

[Close]

BLAST of Lsi03G012580 vs. ExPASy TrEMBL
Match: A0A6J1J0D7 (uncharacterized protein LOC111482320 OS=Cucurbita maxima OX=3661 GN=LOC111482320 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-30
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 3   GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC 62
           GTQ S+NYGPHPSPVVSPF AMG+++ SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC
Sbjct: 283 GTQPSLNYGPHPSPVVSPFSAMGMNRTSRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC 342

Query: 63  QQPLSFDYSQNH 75
           QQPLSFDYSQNH
Sbjct: 343 QQPLSFDYSQNH 354

[Close]

BLAST of Lsi03G012580 vs. ExPASy TrEMBL
Match: A0A6J1I664 (uncharacterized protein LOC111469995 OS=Cucurbita maxima OX=3661 GN=LOC111469995 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-30
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 3   GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC 62
           GTQASV+YGPHPSP VSPFC +GL+Q SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPF 
Sbjct: 283 GTQASVSYGPHPSPAVSPFCTVGLNQTSRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFI 342

Query: 63  QQPLSFDYSQNH 75
           QQPLSFDYSQNH
Sbjct: 343 QQPLSFDYSQNH 354

[Close]

BLAST of Lsi03G012580 vs. NCBI nr
Match: XP_038903441.1 (uncharacterized protein LOC120090027 [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 8.2e-34
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAP 60
           M GTQASVNYGPHPSPVVSPFCAMGL+QASRDASYEQWQSAAMMYAHSYNQLRHSAFQAP
Sbjct: 281 MPGTQASVNYGPHPSPVVSPFCAMGLNQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAP 340

Query: 61  FCQQPLSFDYSQNH 75
           FCQQPLSFDYSQNH
Sbjct: 341 FCQQPLSFDYSQNH 354

[Close]

BLAST of Lsi03G012580 vs. NCBI nr
Match: XP_004136625.2 (uncharacterized protein LOC101215817 isoform X1 [Cucumis sativus] >KGN59412.1 hypothetical protein Csa_001624 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 2.4e-33
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAP 60
           M GTQASVNYGPHPSPVVSPFCAMGL+QASRDASYEQWQSAAMMYAHSYNQ RHSAFQAP
Sbjct: 281 MPGTQASVNYGPHPSPVVSPFCAMGLNQASRDASYEQWQSAAMMYAHSYNQFRHSAFQAP 340

Query: 61  FCQQPLSFDYSQNH 75
           FCQQPLSFDYSQNH
Sbjct: 341 FCQQPLSFDYSQNH 354

[Close]

BLAST of Lsi03G012580 vs. NCBI nr
Match: XP_008443221.1 (PREDICTED: uncharacterized protein LOC103486865 isoform X2 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 4.5e-32
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1   MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAP 60
           M GTQASVNYGPHPS VVSPFCAMGL+QASRDASYEQWQ+AAMMYAHSYNQ RHSAFQAP
Sbjct: 281 MPGTQASVNYGPHPSSVVSPFCAMGLNQASRDASYEQWQNAAMMYAHSYNQFRHSAFQAP 340

Query: 61  FCQQPLSFDYSQNH 75
           FCQQPLSFDYSQNH
Sbjct: 341 FCQQPLSFDYSQNH 354

[Close]

BLAST of Lsi03G012580 vs. NCBI nr
Match: XP_022152036.1 (uncharacterized protein LOC111019846 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 3   GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC 62
           GTQASV+YGPHPSPVVSPFC +GL+Q SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC
Sbjct: 286 GTQASVSYGPHPSPVVSPFCTVGLNQTSRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC 345

Query: 63  QQPLSFDYSQNH 75
           QQPLSFDYSQNH
Sbjct: 346 QQPLSFDYSQNH 357

[Close]

BLAST of Lsi03G012580 vs. NCBI nr
Match: XP_023527688.1 (uncharacterized protein LOC111790835 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 3.2e-30
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 3   GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC 62
           GTQ S+NYGPHPSPVVSPF AMG+++ SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC
Sbjct: 283 GTQPSLNYGPHPSPVVSPFSAMGMNRTSRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFC 342

Query: 63  QQPLSFDYSQNH 75
           QQPLSFDYSQNH
Sbjct: 343 QQPLSFDYSQNH 354

[Close]

BLAST of Lsi03G012580 vs. TAIR 10
Match: AT3G56680.1 (Single-stranded nucleic acid binding R3H protein )

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-13
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 6   ASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQP 65
           A + +GPHPS ++SP+        + DA Y  W +AAMMYAH Y Q R+ + QA F QQP
Sbjct: 291 APLGFGPHPSSIMSPY------GTTMDAMYMHWPNAAMMYAHPYEQFRNGSLQAQFVQQP 350

Query: 66  LSFDYSQN 74
           LSFDY QN
Sbjct: 351 LSFDYMQN 352

[Close]

BLAST of Lsi03G012580 vs. TAIR 10
Match: AT2G40960.1 (Single-stranded nucleic acid binding R3H protein )

HSP 1 Score: 67.4 bits (163), Expect = 5.5e-12
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 7   SVNYGPHPSPVVSPFCAMGLHQASRDAS-YEQW-QSAAMMYAHSYNQLRHSAFQAPFCQQ 66
           S+N G H   V+SP    GL+Q SRDA+ Y QW  +AA+MY HSY+  R+S FQA F  Q
Sbjct: 284 SLNLGQH--SVMSPCVTTGLNQPSRDAAMYMQWPNAAAVMYTHSYDHFRNSPFQAQFYPQ 343

Query: 67  PLSFDYSQN 74
           PLSFDY QN
Sbjct: 344 PLSFDYMQN 350

[Close]

BLAST of Lsi03G012580 vs. TAIR 10
Match: AT5G33406.1 (hAT dimerisation domain-containing protein / transposase-related )

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-10
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 6   ASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQP 65
           A + +GP PS  +SP+        + DA Y    +AAMMYAH Y QLR+   QA F QQP
Sbjct: 428 APLGFGPPPSSTMSPY------GTTMDAMYMHLPNAAMMYAHPYEQLRNGPLQAQFVQQP 487

Query: 66  LSFDYSQN 74
           LSFDY +N
Sbjct: 488 LSFDYCRN 489

The following BLAST results are available for this feature:

BLAST of Lsi03G012580 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G012580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFE9	1.2e-33	95.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G817720 PE=4 SV=1	[more]
A0A1S3B8A9	2.2e-32	93.24	uncharacterized protein LOC103486865 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1DGF4	8.3e-32	93.06	uncharacterized protein LOC111019846 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1J0D7	1.6e-30	90.28	uncharacterized protein LOC111482320 OS=Cucurbita maxima OX=3661 GN=LOC111482320...	[more]
A0A6J1I664	3.5e-30	90.28	uncharacterized protein LOC111469995 OS=Cucurbita maxima OX=3661 GN=LOC111469995...	[more]

BLAST of Lsi03G012580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903441.1	8.2e-34	97.30	uncharacterized protein LOC120090027 [Benincasa hispida]	[more]
XP_004136625.2	2.4e-33	95.95	uncharacterized protein LOC101215817 isoform X1 [Cucumis sativus] >KGN59412.1 hy...	[more]
XP_008443221.1	4.5e-32	93.24	PREDICTED: uncharacterized protein LOC103486865 isoform X2 [Cucumis melo]	[more]
XP_022152036.1	1.7e-31	93.06	uncharacterized protein LOC111019846 [Momordica charantia]	[more]
XP_023527688.1	3.2e-30	90.28	uncharacterized protein LOC111790835 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi03G012580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56680.1	1.3e-13	51.47	Single-stranded nucleic acid binding R3H protein	[more]
AT2G40960.1	5.5e-12	56.52	Single-stranded nucleic acid binding R3H protein	[more]
AT5G33406.1	2.3e-10	48.53	hAT dimerisation domain-containing protein / transposase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15672:SF15	OS05G0411600 PROTEIN	coord: 3..74
None	No IPR available	PANTHER	PTHR15672	CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN	coord: 3..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G012580.1	Lsi03G012580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding