Lsi03G012530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G012530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 37f
Location	chr03: 23132132 .. 23135393 (-)
RNA-Seq Expression	Lsi03G012530
Synteny	Lsi03G012530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCTATTGGCCTTTTTCTTGTTACCATCTCTAGAACTAGCACGCCGAAGCTGTAAACGTCTCCTTTCATGGAGGCTGTAGAACCAAATCCGTATTCTGCACCAAGAATAGGCGTAATTTAATTGATGCACTTAACATGTTTGATAAAAGTCCTAGATGAAAAAGGGAAAAACAATGGATGGTTGTTTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTAAAATCGTTGGGAATATATTCAATGATTCAATTTGTAATAGCTTTATAGCTTATCATCCTCAAGCTTTTAGGCCTAGTGATATTGATAACTTATCATGGTATGAAGGAGAGGGTCTTAACTTAAGTTAGAACTCTAGATATGATGCAATTGAATTGGGTGAACTCCTATTAGGTCCCTTTCGCTCCCTTTTTGTTTTATAGGCATCTTAGCGGAGATATAGCCGATAGATATGGAGATGGAGGTGGAGAAGCTTTCCTCGACTCTGCTATAACTCACTTGACACTCCTAATCCTAATTTTTTACATTTGCTTGGTATGTAGGTGAATTGAAAGTGAAATTCTTGGATTTTTAAAAGCAGAGAATTATACCTGGTGCAATATATCCAATTGATCCAGTTAACATGTTTGCAGTTGACTTTCCCATGTTTTCAACAGTTGCACCGCTTCCCATTCCAGGGGTCATTAACCTTGAGATACCAAAGTCAGAAACAAGGGCTGTCATGTCATCTTTTAGAAGTACATTGCTTGGCTTTAAATCACAGTGTATGACTCTGACTGGAGAATGATGATGCAGGTATGCCATTCCTTCCGCTATATCACTGCATATATTCACCCTCTCAATAAGGTTTAATTCTGAAGAACCTGGAGCCGAGCTGGTAGGTGAATGTGGATATAGATGGTTATCCAAGCTTCCATTTGCCATATATGGTAGAACTAGAGCTTTAAAATCCGGAAGACTACAAGCTGTTATAATTCTGATAAGGTTTCTGTGGCGAATTCGCTTCAAAACTTCGCATTCCCTGTTAAAACTCTTTGTGGAATTTTCAGATTGTGTATGCAGAACCTTAATAGCTACTGTTGTTCCATCTGGAAGGACGCCTCTATAGACTTGTCCATAGCTGCCCGAACCAATAAGTCTCTGTTCATCAAAACCTCCAGTGGCTTCTGATAGTTGCCTGCTTGTTATTCTTGGAAAATTGTGCATAAAATCTGGCATCTTTGATCTCCTCGATGACTCACTATTTCGTGCTGAAATAATTGCTTTTAGACGTTGACAAGCAATCCCACAGCATATTGTTGATAAGAAAGATGATATGCATATGATTAAAATGAATATAGTCAAGAATACAGGTGACTGAAACCGATTTCTCTTGCCAGGACAGGCTGGTATTCCAGGAATTGTCCCACAAAGGAGTGGATTGTTCAAAAATGACAGAGATGTGGATGATTTGAAAAATCCCTCTCTTGGAATCATTCCTTGGAAGTTATTGAATGAAAGATTCAGGTAAGTGAGAGATTGGAGCTTACCTAGACTGGTTGGAATCATGCCTGACAATTGGTTTTTTGAAATGTCAAATGATTCAAGGTTCTCGAGTTCACCTAGGGAATCTGGAAGATGACCTTGGAGGGAATTATTTGAAAAATTTATCAACCTCAGTGCAATGCAACTTGATATCTGAGGGAAGATGCTTCCAGTGAGGTTATTGGATGAAAGGTCCATCTCTTGAACATTTTTCAGCTTACTAAGCTCAATGGGCAAGTTTCCTTGAAAATTATTATGAGAAAGGTTGATAAAAATTCTTATCTCTTGCAAGCCTAAGATCTCTCGAGGAATGCTTCCTGATAACATGTTGAAAGATAAGTCCAGCTTTTGTAGACCTGTGCACTTTACCAATGCTGAAGGTATTGTTCCAGACAAGAGGTTGTGGTTGAGAAACAAATAGTTCATCTGAGTCAGATTTCCAATACTTTCTGGGATTTCTCCTGAAAGTTGGTTGTGAGATAGATCCAACAATCCAAGATGTGGCAACTCGCCTAATGCTTCTGGAATATCTGAAGTGAAGAGGTTGTGTGATAAGAAAAGCTGCTCCAATTTTGACAACCTGCTTATCTCTGCAGGAATTGTTCCGTTTAGTAGATTTGATGTCAAATTCAACCCTGCAAGTTTGGAAAGCTTGGCTAAACTTGGAGGAATTGATCCAAATATCTGGTTTTCCTGCAAAGACAGAACTGAAAAATTGACACCCAGATGACCAATAGAATTGGGCAGCCTCCCTCCAAGCCCCATCCCAGCCAATTCAAGCTCCTCTAGACTACTGCAGTTTCTAAGAGAAGTAATGAACGGTTCAAGATTGGTATTTCCATCGTGGCTTACCATATCATTATTTGATAAATGAAGGAAGCTAAGTGAAGGCAGGTTTTCTACAAGCACTGCAGGCAGTTCGCCCGAAAGATGATTATATTCGACATCCAAGTTATAGAGCGAAGTGTTTCTTAAAGAAAGAGGAAGATCTCCACTGAACTGGTTGTTGTACAGATTGAGATTCCACAGCTTTGGACAATTTCCAATTTCTTCTGGAATTCTTCCTGTTAGGAAGTTGTTGGAAAGGTCTACATTAAGCAACGACGTGCAATTAGAAAAGAGAGAAGGAGGAACTTTGCCATTTAGCTTGTTCTCCCTAAGACTTATAACAGTAAGCCTAGACAAACTAGCAAGGGAAGTTGGTATGGGACCTTCCAAACTGTTGCTGTCGAGGAGAAGGCGGTGAAGATTTCGAAGAGAAAAAAGTTCAGAAGGAATTTCCCCAAAAAGATAATTGTTAACAATTTCCAGAATTCGAAGACCCGTGAGATTGGAGAGGAAGGGTGGAATCTTTCCCACAAGTCCAACACCAATCAAACTGATCTTCGATACCCGATGACGGTGTCGGTCACAAGCAACACCAGTGAAGTTGCATACATCAACAGCCTCAATCCAGTTAGCTAGAGTGGGAGTGGGGTCATGTATGATGCACTTCCTGAAGGCAAGGAGGGCTGCTTTATCAGTGAGCAAGGACTTATGAGGAGGGTAGTGGTGACCTATAATAACTGGAGTCCCAGAATTCAAAACCAGATACTGAAACAGGAGAAGGAACACAGCTCTGAAGAAAACCATATCAAGCCGAAAAACAATACTACAGTGGAAATGACTTGTAAGGTTACCTTCTATCATCATATCATCCTTTACTGCCTTACATTTCTTCTTCCTGTTTCATAA

mRNA sequence

ATGTCGCATCTTAGCGGAGATATAGCCGATAGATATGGAGATGGAGGTGGAGAAGCTTTCCTCGACTCTGCTATAACTCACTTGACACTCCTAATCCTAATTTTTTACATTTGCTTGAGAATTATACCTGGTGCAATATATCCAATTGATCCAGTTAACATGTTTGCAGTTGACTTTCCCATGTTTTCAACAGTTGCACCGCTTCCCATTCCAGGGGTCATTAACCTTGAGATACCAAAGTCAGAAACAAGGGCTGTCATGTATGCCATTCCTTCCGCTATATCACTGCATATATTCACCCTCTCAATAAGGTTTAATTCTGAAGAACCTGGAGCCGAGCTGGTAGGTGAATGTGGATATAGATGGTTATCCAAGCTTCCATTTGCCATATATGGTAGAACTAGAGCTTTAAAATCCGGAAGACTACAAGCTGTTATAATTCTGATAAGGTTTCTGTGGCGAATTCGCTTCAAAACTTCGCATTCCCTGTTAAAACTCTTTGTGGAATTTTCAGATTGTGCTGGTATTCCAGGAATTGTCCCACAAAGGAGTGGATTGTTCAAAAATGACAGAGATGTGGATGATTTGAAAAATCCCTCTCTTGGAATCATTCCTTGGAAGTTATTGAATGAAAGATTCAGATCCAACAATCCAAGATGTGGCAACTCGCCTAATGCTTCTGGAATATCTGAAGTGAAGAGGTTGTGTGATAAGAAAAGCTGCTCCAATTTTGACAACCTGCTTATCTCTGCAGGAATTGTTCCGTTTAGTAGATTTGATGTCAAATTCAACCCTGCAAAATTGGGCAGCCTCCCTCCAAGCCCCATCCCAGCCAATTCAAGCTCCTCTAGACTACTGCAGTTTCTAAGAGAAGTAATGAACGGTTCAAGATTGAGCGAAGTGTTTCTTAAAGAAAGAGGAAGATCTCCACTGAACTGGTTGTTGTACAGATTGAGATTCCACAGCTTTGGACAATTTCCAATTTCTTCTGGAATTCTTCCTGTTAGGAAGTTGTTGGAAAGGTCTACATTAAGCAACGACGTGCAATTAGAAAAGAGAGAAGGAGGAACTTTGCCATTTAGCTTTAAGCCTAGACAAACTAGCAAGGGAAGTTGGTATGGGACCTTCCAAACTGTTGCTGTCGAGGAGAAGGCGGTGAAGATTTCGAAGAGAAAAAAGTTCAGAAGGAATTTCCCCAAAAAGATAATTGTTAACAATTTCCAGAATTCGAAGACCCGTGAGATTGGAGAGGAAGGGTGGAATCTTTCCCACAAGTCCAACACCAATCAAACTGATCTTCGATACCCGATGACGGTGTCGGTCACAAGCAACACCAGTGAAGTTGCATACATCAACAGCCTCAATCCAAGTGGGAGTGGGGTCATGTATGATGCACTTCCTGAAGGCAAGGAGGGCTGCTTTATCAGTGAGCAAGGACTTATGAGGAGGGTAGTGGTGACCTATAATAACTGGAGTCCCAGAATTCAAAACCAGATACTGAAACAGGAGAAGGAACACAGCTCTGAAGAAAACCATATCAAGCCGAAAAACAATACTACAGTGGAAATGACTTGTAAGGTTACCTTCTATCATCATATCATCCTTTACTGCCTTACATTTCTTCTTCCTGTTTCATAA

Coding sequence (CDS)

ATGTCGCATCTTAGCGGAGATATAGCCGATAGATATGGAGATGGAGGTGGAGAAGCTTTCCTCGACTCTGCTATAACTCACTTGACACTCCTAATCCTAATTTTTTACATTTGCTTGAGAATTATACCTGGTGCAATATATCCAATTGATCCAGTTAACATGTTTGCAGTTGACTTTCCCATGTTTTCAACAGTTGCACCGCTTCCCATTCCAGGGGTCATTAACCTTGAGATACCAAAGTCAGAAACAAGGGCTGTCATGTATGCCATTCCTTCCGCTATATCACTGCATATATTCACCCTCTCAATAAGGTTTAATTCTGAAGAACCTGGAGCCGAGCTGGTAGGTGAATGTGGATATAGATGGTTATCCAAGCTTCCATTTGCCATATATGGTAGAACTAGAGCTTTAAAATCCGGAAGACTACAAGCTGTTATAATTCTGATAAGGTTTCTGTGGCGAATTCGCTTCAAAACTTCGCATTCCCTGTTAAAACTCTTTGTGGAATTTTCAGATTGTGCTGGTATTCCAGGAATTGTCCCACAAAGGAGTGGATTGTTCAAAAATGACAGAGATGTGGATGATTTGAAAAATCCCTCTCTTGGAATCATTCCTTGGAAGTTATTGAATGAAAGATTCAGATCCAACAATCCAAGATGTGGCAACTCGCCTAATGCTTCTGGAATATCTGAAGTGAAGAGGTTGTGTGATAAGAAAAGCTGCTCCAATTTTGACAACCTGCTTATCTCTGCAGGAATTGTTCCGTTTAGTAGATTTGATGTCAAATTCAACCCTGCAAAATTGGGCAGCCTCCCTCCAAGCCCCATCCCAGCCAATTCAAGCTCCTCTAGACTACTGCAGTTTCTAAGAGAAGTAATGAACGGTTCAAGATTGAGCGAAGTGTTTCTTAAAGAAAGAGGAAGATCTCCACTGAACTGGTTGTTGTACAGATTGAGATTCCACAGCTTTGGACAATTTCCAATTTCTTCTGGAATTCTTCCTGTTAGGAAGTTGTTGGAAAGGTCTACATTAAGCAACGACGTGCAATTAGAAAAGAGAGAAGGAGGAACTTTGCCATTTAGCTTTAAGCCTAGACAAACTAGCAAGGGAAGTTGGTATGGGACCTTCCAAACTGTTGCTGTCGAGGAGAAGGCGGTGAAGATTTCGAAGAGAAAAAAGTTCAGAAGGAATTTCCCCAAAAAGATAATTGTTAACAATTTCCAGAATTCGAAGACCCGTGAGATTGGAGAGGAAGGGTGGAATCTTTCCCACAAGTCCAACACCAATCAAACTGATCTTCGATACCCGATGACGGTGTCGGTCACAAGCAACACCAGTGAAGTTGCATACATCAACAGCCTCAATCCAAGTGGGAGTGGGGTCATGTATGATGCACTTCCTGAAGGCAAGGAGGGCTGCTTTATCAGTGAGCAAGGACTTATGAGGAGGGTAGTGGTGACCTATAATAACTGGAGTCCCAGAATTCAAAACCAGATACTGAAACAGGAGAAGGAACACAGCTCTGAAGAAAACCATATCAAGCCGAAAAACAATACTACAGTGGAAATGACTTGTAAGGTTACCTTCTATCATCATATCATCCTTTACTGCCTTACATTTCTTCTTCCTGTTTCATAA

Protein sequence

MSHLSGDIADRYGDGGGEAFLDSAITHLTLLILIFYICLRIIPGAIYPIDPVNMFAVDFPMFSTVAPLPIPGVINLEIPKSETRAVMYAIPSAISLHIFTLSIRFNSEEPGAELVGECGYRWLSKLPFAIYGRTRALKSGRLQAVIILIRFLWRIRFKTSHSLLKLFVEFSDCAGIPGIVPQRSGLFKNDRDVDDLKNPSLGIIPWKLLNERFRSNNPRCGNSPNASGISEVKRLCDKKSCSNFDNLLISAGIVPFSRFDVKFNPAKLGSLPPSPIPANSSSSRLLQFLREVMNGSRLSEVFLKERGRSPLNWLLYRLRFHSFGQFPISSGILPVRKLLERSTLSNDVQLEKREGGTLPFSFKPRQTSKGSWYGTFQTVAVEEKAVKISKRKKFRRNFPKKIIVNNFQNSKTREIGEEGWNLSHKSNTNQTDLRYPMTVSVTSNTSEVAYINSLNPSGSGVMYDALPEGKEGCFISEQGLMRRVVVTYNNWSPRIQNQILKQEKEHSSEENHIKPKNNTTVEMTCKVTFYHHIILYCLTFLLPVS

Homology

[Close]

BLAST of Lsi03G012530 vs. ExPASy TrEMBL
Match: A0A4Y1R548 (Mediator of RNA polymerase II transcription subunit 37f OS=Prunus dulcis OX=3755 GN=Prudu_008848 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-04
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 40  RIIPGAIYPIDPVNMFAVDFPMFSTVAPLPIPGVINLEIPKSETRAVMYAI 91
           R +PGA+YPIDP N+FAV+FPM S     P P + NL IPKSET+AV+ ++
Sbjct: 594 RTLPGAMYPIDPHNIFAVEFPMSSRAEFAP-PAINNLAIPKSETKAVISSL 643

[Close]

BLAST of Lsi03G012530 vs. NCBI nr
Match: KAG7018117.1 (hypothetical protein SDJN02_19985, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 4.8e-22
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 462 MYDALPEGKEGCFISEQGLMRRVVVTYNNWSPRIQNQILKQEKEHSSEENHIKPKNNTTV 521
           M DALPEG+EGCFISEQGLMRRVVVTY+NWSPRIQNQ LKQEKEHS EENHIK  NNTTV
Sbjct: 1   MCDALPEGQEGCFISEQGLMRRVVVTYSNWSPRIQNQTLKQEKEHSPEENHIKQNNNTTV 60

Query: 522 EMT 525
           EMT
Sbjct: 61  EMT 63

[Close]

BLAST of Lsi03G012530 vs. NCBI nr
Match: KAG6670305.1 (hypothetical protein CIPAW_01G302200 [Carya illinoinensis])

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-05
Identity = 48/159 (30.19%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 201 LGIIPWKLLNERFRSNNPRCGNSPNASGISEVKRLCDKKSCSNFDNLLISAGIVPFSRFD 260
           +G +P +LL E  +  + R  +S   +GIS ++  CDK SC + + L I  G++P + F 
Sbjct: 1   MGTVPERLLYETLK--DLRFRSSEREAGISPLRLFCDKSSCISVEILPIVEGMLPLNWFL 60

Query: 261 VKFNPAKLGSLPPSPIPANSSSSRLLQFLREVMNGSRLSEVFLKERGRSPLNWLLYRLRF 320
           +KF   +L +L      + ++   + + L    N +R  +   K  G+ P   LL +   
Sbjct: 61  LKFRTERLCNL------SRATGIWVSRLLLSRFNRTR-EDRLTKLEGKLPFRALLEKSSV 120

Query: 321 HSFGQFPISSGILPVRKLLERSTLSNDVQLEKREGGTLP 360
            S    PIS+GI P  +LL R   S+ +   K E G LP
Sbjct: 121 LSLDSLPISAGIAPPIRLLLRDISSSSLNALK-EAGMLP 149

[Close]

BLAST of Lsi03G012530 vs. NCBI nr
Match: BBG99231.1 (Mediator of RNA polymerase II transcription subunit 37f [Prunus dulcis])

HSP 1 Score: 57.4 bits (137), Expect = 4.5e-04
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 40  RIIPGAIYPIDPVNMFAVDFPMFSTVAPLPIPGVINLEIPKSETRAVMYAI 91
           R +PGA+YPIDP N+FAV+FPM S     P P + NL IPKSET+AV+ ++
Sbjct: 594 RTLPGAMYPIDPHNIFAVEFPMSSRAEFAP-PAINNLAIPKSETKAVISSL 643

The following BLAST results are available for this feature:

BLAST of Lsi03G012530 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G012530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y1R548	2.2e-04	56.86	Mediator of RNA polymerase II transcription subunit 37f OS=Prunus dulcis OX=3755...	[more]

BLAST of Lsi03G012530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018117.1	4.8e-22	88.89	hypothetical protein SDJN02_19985, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6670305.1	2.4e-05	30.19	hypothetical protein CIPAW_01G302200 [Carya illinoinensis]	[more]
BBG99231.1	4.5e-04	56.86	Mediator of RNA polymerase II transcription subunit 37f [Prunus dulcis]	[more]

BLAST of Lsi03G012530 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G012530.1	Lsi03G012530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0000166	nucleotide binding