Lsi03G012500 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G012500
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr03: 23104092 .. 23104379 (-)
RNA-Seq Expression	Lsi03G012500
Synteny	Lsi03G012500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTTGACAGCATTCTAGCTTCTCCCCATAGGAGGTCCCCATCATTCAGAAAGCAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAAGCGGCATCGCTTCCTCTTAACAGCGCTGGCACTCTTGACTTTCCTTTGCACAATCTATCTTTACTTTGCTATCACTTTAGGGGCTACCGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAGAGAATTGTGTCATCTGGAGCATGCTAAAGCTTCTCTGGCTAAAGGCAAATTAAAGTTTCTATGA

mRNA sequence

ATGGTTCTTGACAGCATTCTAGCTTCTCCCCATAGGAGGTCCCCATCATTCAGAAAGCAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAAGCGGCATCGCTTCCTCTTAACAGCGCTGGCACTCTTGACTTTCCTTTGCACAATCTATCTTTACTTTGCTATCACTTTAGGGGCTACCGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAGAGAATTGTGTCATCTGGAGCATGCTAAAGCTTCTCTGGCTAAAGGCAAATTAAAGTTTCTATGA

Coding sequence (CDS)

ATGGTTCTTGACAGCATTCTAGCTTCTCCCCATAGGAGGTCCCCATCATTCAGAAAGCAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAAGCGGCATCGCTTCCTCTTAACAGCGCTGGCACTCTTGACTTTCCTTTGCACAATCTATCTTTACTTTGCTATCACTTTAGGGGCTACCGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAGAGAATTGTGTCATCTGGAGCATGCTAAAGCTTCTCTGGCTAAAGGCAAATTAAAGTTTCTATGA

Protein sequence

MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITLGATVSSCSGLTGAQRELCHLEHAKASLAKGKLKFL

Homology

[Close]

BLAST of Lsi03G012500 vs. ExPASy TrEMBL
Match: A0A0A0L9L6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710730 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.9e-42
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKFL 96
          GAT SSCSGLTG QRELC LEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

[Close]

BLAST of Lsi03G012500 vs. ExPASy TrEMBL
Match: A0A5D3DCR7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00060 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKFL 96
          GAT SSCSGLTG QRELC LEHAKASLA GKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 95

[Close]

BLAST of Lsi03G012500 vs. ExPASy TrEMBL
Match: A0A1S4E410 (uncharacterized protein LOC103501213 OS=Cucumis melo OX=3656 GN=LOC103501213 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKFL 96
          GAT SSCSGLTG QRELC LEHAKASLA GKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 95

[Close]

BLAST of Lsi03G012500 vs. ExPASy TrEMBL
Match: A0A6J1DJ35 (uncharacterized protein LOC111020959 OS=Momordica charantia OX=3673 GN=LOC111020959 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.4e-41
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWS LF RHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSVLFNRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKFL 96
          GAT SSCSGLTGAQ+ELC +EHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCRMEHAKASLAKGKLKFL 95

[Close]

BLAST of Lsi03G012500 vs. ExPASy TrEMBL
Match: A0A6J1GA22 (uncharacterized protein LOC111452323 OS=Cucurbita moschata OX=3662 GN=LOC111452323 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASP RR+P+FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKFL 96
          GAT SSCSGLTGAQ+ELCHLEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

[Close]

BLAST of Lsi03G012500 vs. NCBI nr
Match: XP_011651806.1 (uncharacterized protein LOC101216392 [Cucumis sativus] >KGN58645.1 hypothetical protein Csa_001579 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 8.1e-42
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKFL 96
          GAT SSCSGLTG QRELC LEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

[Close]

BLAST of Lsi03G012500 vs. NCBI nr
Match: XP_016902957.1 (PREDICTED: uncharacterized protein LOC103501213 [Cucumis melo] >KAA0034943.1 uncharacterized protein E6C27_scaffold434G00060 [Cucumis melo var. makuwa] >TYK21298.1 uncharacterized protein E5676_scaffold1199G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.1e-41
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKFL 96
          GAT SSCSGLTG QRELC LEHAKASLA GKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 95

[Close]

BLAST of Lsi03G012500 vs. NCBI nr
Match: XP_038903507.1 (uncharacterized protein LOC120090090 [Benincasa hispida] >XP_038903508.1 uncharacterized protein LOC120090090 [Benincasa hispida] >XP_038903509.1 uncharacterized protein LOC120090090 [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 8.9e-41
Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFA+TL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAVTL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKF 95
          GAT SSCSGLTG QRELC LEHAKASL KGKLKF
Sbjct: 61 GATASSCSGLTGVQRELCRLEHAKASLTKGKLKF 94

[Close]

BLAST of Lsi03G012500 vs. NCBI nr
Match: XP_022153454.1 (uncharacterized protein LOC111020959 [Momordica charantia])

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASPHRRSPSFRKQFPANELGSWS LF RHRFLLTALALLTFLCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSVLFNRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKFL 96
          GAT SSCSGLTGAQ+ELC +EHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCRMEHAKASLAKGKLKFL 95

[Close]

BLAST of Lsi03G012500 vs. NCBI nr
Match: XP_022948745.1 (uncharacterized protein LOC111452323 [Cucurbita moschata] >XP_022948746.1 uncharacterized protein LOC111452323 [Cucurbita moschata])

HSP 1 Score: 173.3 bits (438), Expect = 9.8e-40
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLDSILASP RR+P+FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKFL 96
          GAT SSCSGLTGAQ+ELCHLEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

[Close]

BLAST of Lsi03G012500 vs. TAIR 10
Match: AT1G16170.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.2 bits (274), Expect = 9.5e-25
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLD +++SP RR    +KQ+  +ELGSWSTL +RH++LLTALALL FLCT+YLYFA+TL
Sbjct: 1  MVLDGLVSSPSRRQQCLKKQW--DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKF 95
          GA  SSC GLTG  + +C L+  +A L+KGKLKF
Sbjct: 61 GARHSSCYGLTGKDKAMCQLQLVQA-LSKGKLKF 91

[Close]

BLAST of Lsi03G012500 vs. TAIR 10
Match: AT1G79660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-23
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60
          MVLD I++SP RR  + +KQ+  ++LGS ST+ +RHRFLLTA+ LL FLCTIY+YFA+TL
Sbjct: 1  MVLDGIVSSPLRRPHALKKQW--DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTL 60

Query: 61 GATVSSCSGLTGAQRELCHLEHAKASLAKGKLKF 95
          GA    CSG+TG  + +C +EH +AS + GKLKF
Sbjct: 61 GARHLLCSGMTGKDKAMCQMEHIQASFSNGKLKF 92

The following BLAST results are available for this feature:

BLAST of Lsi03G012500 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G012500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9L6	3.9e-42	96.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710730 PE=4 SV=1	[more]
A0A5D3DCR7	1.5e-41	95.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E410	1.5e-41	95.79	uncharacterized protein LOC103501213 OS=Cucumis melo OX=3656 GN=LOC103501213 PE=...	[more]
A0A6J1DJ35	7.4e-41	93.68	uncharacterized protein LOC111020959 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1GA22	4.8e-40	92.63	uncharacterized protein LOC111452323 OS=Cucurbita moschata OX=3662 GN=LOC1114523...	[more]

BLAST of Lsi03G012500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651806.1	8.1e-42	96.84	uncharacterized protein LOC101216392 [Cucumis sativus] >KGN58645.1 hypothetical ...	[more]
XP_016902957.1	3.1e-41	95.79	PREDICTED: uncharacterized protein LOC103501213 [Cucumis melo] >KAA0034943.1 unc...	[more]
XP_038903507.1	8.9e-41	94.68	uncharacterized protein LOC120090090 [Benincasa hispida] >XP_038903508.1 unchara...	[more]
XP_022153454.1	1.5e-40	93.68	uncharacterized protein LOC111020959 [Momordica charantia]	[more]
XP_022948745.1	9.8e-40	92.63	uncharacterized protein LOC111452323 [Cucurbita moschata] >XP_022948746.1 unchar...	[more]

BLAST of Lsi03G012500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16170.1	9.5e-25	61.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G79660.1	1.8e-23	57.45	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34774:SF1	EPHRIN-A3 PROTEIN	coord: 1..95
None	No IPR available	PANTHER	PTHR34774	EPHRIN-A3 PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G012500.1	Lsi03G012500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane