Lsi03G012110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G012110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	arabinogalactan protein 23
Location	chr03: 22660101 .. 22665801 (+)
RNA-Seq Expression	Lsi03G012110
Synteny	Lsi03G012110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAGTTCTTCTTCACCGTTGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCTCCGCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGGGAGTCAAGAACATACACCAATCGGGTGTATCCGCGAGCTCGCCATGTTTGGTTGAGGGTTTTGGATTGTATTCTTTGCAGCAGCACCAGGTAGATGATTTTCTTCTTCTTTTTCTTTTCAAGATTTCCAACTTCAGGACCCCCCGTCGCTCTGTATATATTCTTTGATTCTCTCCTTTCGTCCATAAGATTTGGATGAGTGTGATTCTGGTGCCGATTCAGTTCTTGCGGGATTCTGTTGTAAATTGCTGAATGTAACATGTTAGAGGATGTGTTTCCAGTTAATTTTAGAAAAATAAAGAGATGATGTTCGAGTTAATATGTGTACTGTGATATTCTGTTTCTCTCTTTCCATTCAATTTAAGGATTTCGAAATTTGTTTTTTTCTGAATCTTGGGAATGAAATTGCTTCTCTGTCCTGACTTCTCATACTTGCTATAGCTAGTAATTTGATGTTAATTTGATTGATTTATAGTTGATGAATTGATTGCAAGCCCAAAATGACAGCTCTAGATACAGAATGTCAGATTCATGTATACCTATTCATTGTATTTGATAGGGTTGAAGAAGAGCATCAATTTCAATATATAATTGTGTGTGTGATGTCTTCCATCCAAGATTTTGGGCATGTTAGTTAGAGGGTTATTCGATGCTTGTGAATGTAAGGTTATGGTGTCTATTCCATAGCAACTGCAGGATTGATTCCTATGAAGGTGATTGGGAATATCAGATTGTTGTGTTTCTTTGAGACCCGTATTGGCTTTTGGTTTTTGAAAATTAAGCTTTACTCCTTCCCTTTTTACGTTTTTTTGTCTGTTTTTAAGAGAGGTTTTCAAAATGCTAAATTTTGATAACTAAAAAGTAGTTTTTAAAAGTGTATTTTTGCTTTTGGAATTTTACTGTGAATTCAAATATTCCTTAATAAAGATAAAAACTACAATAAAGAAATGGTGTGAAAATTAACACAATTTTAAAAAACCAAATAGTTATTTAACGGGTTGTAGATTTTCTGATTTATTTTTCTTACATTGAGGTTTATGGAAGACAAGAATTCTAAAATTTTTGAGTTTCCAGTTTGAACTTGAACTTTAGAGGGTATTTTCCGAACAACCCAAGACTTTATTACTAAGATCTTTGGTCACTAAAATGTAACAAAATCCTTACTCCATTCCAATACTGCCTCTGTTAGTTTATTGTTTAATAATTCTATACATCATCAGCTCTTTACAACACAGAGTTTCCTTTTTCTTAAGTTCAACACTTGCAGGATAAAGACTCATACCATCAACTTTTGAGACGGTAATTGGTGTCTTATCCATCCAGTTCTATTCAAAATGACCTTTACAACATAGACTGACTTACAGGCTAATTATCTCATACAAATTCATGTATGTGAGATAAAATTGCTTGTTTTTGTCTGTTGGAGGATCTCTTTAGAGCAGTTCAGTGCAAGTATATATATGTATATGTGTGTGTATATTTATTGAGAGTAATTTTTGATGCATGGTTGTCTAAGATGTTTGGATATCTTTATCTGATGCAAAAGGAGTATTACCATACATCTGTATATCCATCATTATTTATGATATATGACTTCATCAAAAGAAAAATAGATTTCGTTTGATGATTATTTAGTTATTTCCGCTGTTGTTTCTATGTTTTGTTATTGACTTTCCAAAAAAGTATTTTAATTTTAAAAGAGTGAGAGAGAAACATTTGACTACAAAAAAGTATTTTAATTAAAAAAAGAAAAAGAGAAAATTTTGACTAGGAATCCCAAGTCTTTATTTCAAAGACAGAAAATTGAAAAGCAAATGGGAATGGGACCAAAGACACTGTATGTTTTTAAAGTATTGGTTTATTGGATATGCTCAAGATTAAGATGAGTTCTTGTTTGATAGCAAACACTGGATGGTTACCCAAAATCTAGAACATTAGAAAACAAGGTGGTATAGCAATTGTTCTTATAAGATTCACTGGGTATTTTTTTTTTTTTTTTTTGGCTCTTTGTTTTACTTTCAATGTATTAAGCTGATTGGAGTCTTGCACGAATACAGCCAAAAATATGTTGTTTATCCTGAAAAAGGTTACAATTTCATTACAAATTTGGATAATTAAAAAATTTTCATATTAGTCACCCAATATCAGTTTTTGTTTTCTGAATCATATGGTTGGATCTCAATTTTGATGCTTTTTTTAGTACAATAAGAATGTGGGATTCAAATTATATACCTTTTGGTCGTTAACACATCTATAAATTAGTTGAACTATGTTTGCTTTAGCCTCAATTTTGATTTGGTCATTATGATGAGATTCAATCTCATAAGTTGTCTCTAAATTTCCTAAATAGATATTTGAAAAGAAATATTAATTCTGTAAATAGAAAGCTTTTTCTGGAAATGCTTTTGTTTGTAGGGTTTTGAAACTGCAAATATGTGAAGTTTGACTATTTCATAAAAACTAAAATGGAACTTTTCTAGACCAAATTGAAATTAACATAAATCATATAGGAAAGATCGAAAATTTTAAAACTGCAAGAGGAATCATTGATACCAAAATTGAAATTTATTTAACCAAATTTAAGCGCAAAAAGAAAGTAACAAAGTTTTCTTTTCTTTTTTGGATTCAACGATAGGTAAGATAAGAGTTTTGAACCTCTAATCTCTCGGTTGAGTATAATTATATATTTTATATTAATTGAGTTATGCTCGTGTTTTTTAGAATAGGCAAGTTTTAAGCTCATCAAACAAAATCAAGACAAATTACTTTGGTAAATAATAATAACAACAATAATGATAATATTATTATGACGTTTCGTCTATTTTAGAACATAACTAGTCCAATTAAGTAGATATATTATATATATTTCTACCATGTCTCAAGTAAGATTTAGTAAGTTATCGAAGTATATTTAGCTAAACGATAATTGCCATGGACTTTTTTCTTATAAGTTGGATGTTCAATTCCATCACCGTCGTAGTTGTTGTACTAAAAACAGATTGTTAAGTGATTCATTATGTAATCATGGCCTCAAGAGCTTTGCCTCTATCAAATCCTCACCTTCAAAAGAAATATATTGAACTGATTTTAGAGGTGGATTTCATATCAAGTGATGGTGTATTGTTGGTCACACTTTTCCTTTGTTACCCTTTTGTTCTTTCTTTCTTTGTGAACGTGTGGTTAAGCTTGCGAGCAATTTGGACAATTGATCCTACTGCATTTAGTTGTCAAAGAAATTAATGGAATATAAATCCTGTTTAGTAACCATTTTATTTTTTTAAAATTAAGCTTATTTATTTCTCATTTTTTACATTGATTTGTATATCTTTTAAGTACAATAATTGAATTTTTTGCCAAATTTCAAAAACAAAAACAAAATTTTTAAAGTTACCTTTTTTTTTTGTTTTAAGTTTTGGCTTGAATTTTTAAACCATTAATAAAAAAAGTAGATAACAGAATAACAAATTTGAAGGTAGAAGTAGTGTATAAATTTAATTTTAAAAATAAAAGCAAAAAATAAAATGGTTACAAAATGGAGCCTAAATTTCTCTGAGTTAGGTAGCCATAATGCCTTTAAACTCATTTTCTGTTAGCCCTACTGTTATTACATAATCATGTCATTCATTCAATATTTGTTTGATCTACTAATTCAATTGAATATATATGTCAAATTTGATTCATTCATTAAATAAAGATTTTACACCTTTTACATCTTTTAAACCAGTTAAAATGTTTATTATTTTATATTCACATTAAGAATATTTTGTTACCATAAGGCCTGCGTTTAGCAGTTTTTGTCTTGAGATTTTAAACAGACATTTAATATTCTTGTTGGTTTCACATGATTTCACCTTTTAAAACTCACGATATTATTATCCGGAGAACTTTAAAACTCATCAGGATTTTATAATACCCTCCATATATGTGAAATTTTTATACCTATGAGATTATCAGTAAAAATATAGCCCAATTTATTAATAAATTAATTTTAGTTAATTATTAGAGCTATTTTCAAATATAGCAAAATGAGTCAACTTATTTACAAATATAGCAAAATGTCTGGATAGAAATTGATAGACATCTATAAGTGTGTCACTAATAGTGATAGACAGTAACATTTTGTTATATTTGAAAATATTATTATTATTATTAATTTTAGGGAAATTAATATAAGCAGAAAAAATATCAAATTATTTACCAATATAGGAATTTTTTAATGCCTATCAGCAATGATACAATAAAATTTTTCTATATTTGTAAATAATTTGACTCATTTTTCTATATTTGAAAACAACCCATAATTTTAATTATAAAAATTTATGGTTAATTATTAACCTTCTAATTAATTTATATTTATTTAATTAAATCAAATCATTAAATAAATATTTAATTAATGTTAATATTAAGATATTCATTTATTTATGTTTTTACGTGATTAAATAAATTAATCAATATAATAATATATTAAATAATACTAAATTTAACTTAAGACCTTTTTTCTTACCTTTAATGATGTATTTATTTAATTTTACTTTCTGTATAAATCAAACCCATATGTTTATGTTTAACTTTCAATATTAATTATTCTGTCTATCCAAACACTAAATACAAATATTAGTTAAAAGTTTCTAATATTCCCTAGTATCATACTCTTACGTTGATATTATAAATTTGCTGTTATAAATATTTGTGGATCTCACATTGATGTCATTAGATTCCACTTTATTTTAAAAGCGCGTCGACGTGACACATAACAAATGGTGGTATCGTAGTATAGAAAATTTTCTCATGAAACAATATTTGCTATCCGAACGAGTCCAATAGAAGAGCGATACACGGTGATGTGCAAGATGCCGTGTATCTAACTTTATGCAACTCACTTTAATTATAAAAAATAAAAATATTTTAAAGTAAAAGATGTGTTAAACTATATTAGCGGATAATATGGATGAAAATGTCAGATTTAATACCATGAGTATAGCACAAAAATATATTTAATTTCTATTTATCCTTGAAAGAATTAATAAATGAAATAATTTTCAAAAAAGAAAATAATAAATAAAACCAAAACGGCTTTTCCCAGAATAATGCAAACGGAGAAAGAAAGGATTAAAAATTCAAACAAAATCCCAAAAAAAGCCCTAATTTCCCAACCATTAATCATCCTCTTCGATTTCCCTCCAAATCAGGAACTGTCTTCTAAATATAGCTCTGCAAATTCAACAACAAATTACCTTCCACCGAAGATCGCTCCAGTTTCCACCTATAAATCATACGCATTCCATCTCATTTTCGTCAGGCAGCAATTTCCAAAGCGAAGGCGTTTTTCGGTGATCTTTCTCTCGTTCGATTCATCTCACCGAATAAACGCCACACAAATCCAAAAAAAAAACTAAAAAATCGCAATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGCCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGTGGCGCCGCCACTGTTCTCCCGGCAATTGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCCGCCTACTACTTGCAATGA

mRNA sequence

ATGTTGCAGTTCTTCTTCACCGTTGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCTCCGCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGGGAGTCAAGAACATACACCAATCGGGTGTATCCGCGAGCTCGCCATAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGCCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGTGGCGCCGCCACTGTTCTCCCGGCAATTGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCCGCCTACTACTTGCAATGA

Coding sequence (CDS)

ATGTTGCAGTTCTTCTTCACCGTTGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCTCCGCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGGGAGTCAAGAACATACACCAATCGGGTGTATCCGCGAGCTCGCCATAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGCCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGTGGCGCCGCCACTGTTCTCCCGGCAATTGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCCGCCTACTACTTGCAATGA

Protein sequence

MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYLQ

Homology

[Close]

BLAST of Lsi03G012110 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 9.7e-10
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 53  KIACAVLFAAATVSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYL 109
           KIAC VLFAAA+++A +A +E  APAPGP+S A+  LPA+GSL+GASL+S+ +YYL
Sbjct: 5   KIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Lsi03G012110 vs. ExPASy TrEMBL
Match: A0A6J1J7E0 (uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.3e-19
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 53
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 52

[Close]

BLAST of Lsi03G012110 vs. ExPASy TrEMBL
Match: A0A0A0LD25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.3e-19
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 53
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 52

[Close]

BLAST of Lsi03G012110 vs. ExPASy TrEMBL
Match: A0A6J1F484 (uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC111441965 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.3e-19
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 53
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 52

[Close]

BLAST of Lsi03G012110 vs. ExPASy TrEMBL
Match: A0A1S4E3E9 (uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.3e-19
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 53
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 52

[Close]

BLAST of Lsi03G012110 vs. ExPASy TrEMBL
Match: A0A6J1DEC8 (uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020277 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.9e-18
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 53
          MLQFFFT+AFSAVPLTLY+PPLRS NLFVETMEEILRESRTYTNRVYPRARH
Sbjct: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARH 52

[Close]

BLAST of Lsi03G012110 vs. NCBI nr
Match: XP_038905300.1 (uncharacterized protein LOC120091370 [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 8.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 53
          MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Sbjct: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 52

[Close]

BLAST of Lsi03G012110 vs. NCBI nr
Match: KAG6581581.1 (hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 53
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 52

[Close]

BLAST of Lsi03G012110 vs. NCBI nr
Match: KAE8650936.1 (hypothetical protein Csa_001741 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 53
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 52

[Close]

BLAST of Lsi03G012110 vs. NCBI nr
Match: XP_022934952.1 (uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 uncharacterized protein LOC111481923 [Cucurbita maxima] >XP_023527102.1 uncharacterized protein LOC111790442 [Cucurbita pepo subsp. pepo] >KAG7018085.1 hypothetical protein SDJN02_19951, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 53
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 52

[Close]

BLAST of Lsi03G012110 vs. NCBI nr
Match: XP_011651782.1 (uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED: uncharacterized protein LOC107991865 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 53
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARH 52

[Close]

BLAST of Lsi03G012110 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRAR 52
          MLQ FFT+AFSA PLTLYIPP+R   +FVETMEE+  E R Y+ R++PRAR
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRAR 51

[Close]

BLAST of Lsi03G012110 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 64.3 bits (155), Expect = 6.9e-11
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 53  KIACAVLFAAATVSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYL 109
           KIAC VLFAAA+++A +A +E  APAPGP+S A+  LPA+GSL+GASL+S+ +YYL
Sbjct: 5   KIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Lsi03G012110 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 53  KIACAVLFAAATVSAAVAHDEALAPAPGP-SSGAATVLPAIGSLIGASLLSVAAYYL 109
           KIAC V+FAAA+++A +A  E  APAPGP +SGA+  +PA+GSL+GASL+S+ AYYL
Sbjct: 5   KIACGVVFAAASMTAVMA-AEVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYYL 60

The following BLAST results are available for this feature:

BLAST of Lsi03G012110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	9.7e-10	62.50	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Lsi03G012110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7E0	5.3e-19	98.08	uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923...	[more]
A0A0A0LD25	5.3e-19	98.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1	[more]
A0A6J1F484	5.3e-19	98.08	uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A1S4E3E9	5.3e-19	98.08	uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=...	[more]
A0A6J1DEC8	5.9e-18	94.23	uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Lsi03G012110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905300.1	8.4e-19	100.00	uncharacterized protein LOC120091370 [Benincasa hispida]	[more]
KAG6581581.1	1.1e-18	98.08	hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8650936.1	1.1e-18	98.08	hypothetical protein Csa_001741 [Cucumis sativus]	[more]
XP_022934952.1	1.1e-18	98.08	uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 unchar...	[more]
XP_011651782.1	1.1e-18	98.08	uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED...	[more]

BLAST of Lsi03G012110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52105.1	1.3e-12	66.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G57690.1	6.9e-11	62.50	arabinogalactan protein 23	[more]
AT2G41905.1	3.2e-08	61.40	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616:SF4	BNAC07G32700D PROTEIN	coord: 1..55
None	No IPR available	PANTHER	PTHR36616	BNAC07G32700D PROTEIN	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G012110.1	Lsi03G012110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane