Lsi03G010600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G010600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	WD repeat-containing protein 89 homolog
Location	chr03: 20341199 .. 20342757 (-)
RNA-Seq Expression	Lsi03G010600
Synteny	Lsi03G010600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATGGTAGCTTATGGGACTGGACAGATGGGAGAAATGAAGCAGATATCACAGATGCTCGCACACTAGCTTCCAACAGTTGGACAATGGGTCATGTGAGTTCTTCCATCACATCTGTTTTTCATGAATCGGTGAACTTATGTACCCTTCTTCTACGTTTGCACTCAGTGATGATTTGTGATGATTTTAATTAATTTATTTATTTTGATAGGAAATAATCTCGTCATTATAGTTTAGAAGGTTTTTTGCATTGAATTAACAAGCGTGGGGACTCCCCCTAAGATGCTTCTGTTTTCATATTTTATTTGAAGAAGTTAGAAGATCAGAATTGGACTGTTTATTTTATTTGAACAAGAAAGAACTTCACATTGATATAATGAAAGTGATTAAAAGTTCAAGGGATACAAACTCCTAAAGAGAGTGAAACAGAAACATTAAAAACAGCAAATACACCCATAAAGAGAACAATCATGCACAAGAAATTTTCATAGACCTAACAAAATGCACCCTATTGAAAATGACTATTATTGACTTTTGCTGTCATTTTGAGAAACTTGAGAAAACTAGGAAGGGTCTTTCAAATCTGCTGCTATAGCTTTTACTTTGTACTTTTCAGAAATGACGAATAAGTGTCATTTAGCTCTTGTTTGTATTGGAGAAGAATCTCTAACTTCTTTTGAAGATATTCTACTCTGCAAAGAACCATTTCATGACGAATCAATTCTAACTCCCCATCAACTTGTGCAATCCAAGTGGAAATTTTATCCATAAAAGTGGAATTGAACCGTGTTTATTAAAATTGATAACCTTTTGTCCTCGACATAGTTGTGGTTGTGCTTGAGATTTGTTGATGTCAGTATCACTATCTTACCAGGTGATCATTTAAACAGAAAGGGAAACAAATAACTATTTCTAGTGTCTTGAGATAATAGATAATACAGACTAGATTTAACCAGCCCATCAATACAAAGACTAGATACAACCGACGATGCATACATGTTATACCAATTTGCTTCCTTCTTTGGCAGGTTGATTATTTAGTTGATTGTCACTACTCAAATGAAGGCGGAAGATTGTGGGTTCTTGGAGGTACCAATGATGGCACCGTTGGCTACTTCCCAATTGACCACAGTAAGGGGAAGAATGCCATCGAATCACCGGACATTATACTTGAGGGTGGTCACGTTGGCGTCGTTAGAAGTGTCTTGCCCACGACGAACGTATTGGGTGGATTTTCACAGAGCCAAGGTGTGTTTGGATGGACAGGTGGAGAAGATGGACGTTTATGTTGTTGGTGTTCGGACGATTCTCATGAAATGAATCGATCCTGGATTTCAAGCACTCTAGTTATTAAGTCACCCGGTGCTCGGAGGAAAAATAGGCACCATCCTTACTAAAGATCAACATATGTTTTTTGTGTCTTTGATCATACAATCTCTTAATGTTTCTGTAGCTGTATTAATCATCATGTTGCCTCCCAACCCCTCAATTTGATGTCTTTTGACTTGCCTCTTTATGGGAGTATTATATAAAAATGGGTTAAAATTAAATGATT

mRNA sequence

ATGGCCGATGGTAGCTTATGGGACTGGACAGATGGGAGAAATGAAGCAGATATCACAGATGCTCGCACACTAGCTTCCAACAGTTGGACAATGGGTCATGTTGATTATTTAGTTGATTGTCACTACTCAAATGAAGGCGGAAGATTGTGGGTTCTTGGAGGTACCAATGATGGCACCGTTGGCTACTTCCCAATTGACCACAGTAAGGGGAAGAATGCCATCGAATCACCGGACATTATACTTGAGGGTGGTCACGTTGGCGTCGTTAGAAGTGTCTTGCCCACGACGAACGTATTGGGTGGATTTTCACAGAGCCAAGGTGTGTTTGGATGGACAGGTGGAGAAGATGGACGTTTATGTTGTTGGTGTTCGGACGATTCTCATGAAATGAATCGATCCTGGATTTCAAGCACTCTAGTTATTAAGTCACCCGGTGCTCGGAGGAAAAATAGGCACCATCCTTACTAAAGATCAACATATGTTTTTTGTGTCTTTGATCATACAATCTCTTAATGTTTCTGTAGCTGTATTAATCATCATGTTGCCTCCCAACCCCTCAATTTGATGTCTTTTGACTTGCCTCTTTATGGGAGTATTATATAAAAATGGGTTAAAATTAAATGATT

Coding sequence (CDS)

ATGGCCGATGGTAGCTTATGGGACTGGACAGATGGGAGAAATGAAGCAGATATCACAGATGCTCGCACACTAGCTTCCAACAGTTGGACAATGGGTCATGTTGATTATTTAGTTGATTGTCACTACTCAAATGAAGGCGGAAGATTGTGGGTTCTTGGAGGTACCAATGATGGCACCGTTGGCTACTTCCCAATTGACCACAGTAAGGGGAAGAATGCCATCGAATCACCGGACATTATACTTGAGGGTGGTCACGTTGGCGTCGTTAGAAGTGTCTTGCCCACGACGAACGTATTGGGTGGATTTTCACAGAGCCAAGGTGTGTTTGGATGGACAGGTGGAGAAGATGGACGTTTATGTTGTTGGTGTTCGGACGATTCTCATGAAATGAATCGATCCTGGATTTCAAGCACTCTAGTTATTAAGTCACCCGGTGCTCGGAGGAAAAATAGGCACCATCCTTACTAA

Protein sequence

MADGSLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCSDDSHEMNRSWISSTLVIKSPGARRKNRHHPY

Homology

[Close]

BLAST of Lsi03G010600 vs. ExPASy Swiss-Prot
Match: Q944S2 (WD repeat-containing protein GTS1 OS=Arabidopsis thaliana OX=3702 GN=GTS1 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-42
Identity = 86/152 (56.58%), Postives = 106/152 (69.74%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           S+W+W DG  E ++  AR LAS+SWT  +VDY VDCH    G  LWV+GGT  GTVGYFP
Sbjct: 246 SIWNWEDGSCEVNLEKARELASDSWTQDNVDYFVDCHCPG-GEDLWVIGGTCAGTVGYFP 305

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           +++ K   +I + + IL GGH+ VVRSVL      GG   + G+FGWTGGEDGRLCCW S
Sbjct: 306 VNY-KQPGSIGTAEAILGGGHIDVVRSVLQMPGEYGG---AAGLFGWTGGEDGRLCCWKS 365

Query: 125 D-DSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           D D+ E+NRSW SS LV+K P  R+KNRH PY
Sbjct: 366 DEDATEINRSWTSSELVVKPPRNRKKNRHSPY 392

[Close]

BLAST of Lsi03G010600 vs. ExPASy Swiss-Prot
Match: Q5FVP5 (WD repeat-containing protein 89 OS=Rattus norvegicus OX=10116 GN=Wdr89 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04
Identity = 35/106 (33.02%), Postives = 49/106 (46.23%), Query Frame = 0


Query: 17  DITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIES 76
           D+TD +         GH+DYL+   Y     RL+V+GGTN G +       + G + + S
Sbjct: 264 DVTDVKE--------GHLDYLIGGLYHENMDRLFVIGGTNLGKIHLLSCTKT-GLSHVTS 323

Query: 77  PDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCW 123
               L+GGH   VRS   T       S+   +   TGGED +L  W
Sbjct: 324 ----LQGGHAATVRSFCWTV------SEDSLL---TGGEDAQLLLW 347

[Close]

BLAST of Lsi03G010600 vs. ExPASy Swiss-Prot
Match: Q9D0R9 (WD repeat-containing protein 89 OS=Mus musculus OX=10090 GN=Wdr89 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.1e-04
Identity = 32/91 (35.16%), Postives = 43/91 (47.25%), Query Frame = 0


Query: 32  GHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFPIDHSKGKNAIESPDIILEGGHVGVVRS 91
           GH+DYL+   Y  +  RL+V+GGTN G +       S G   + S    L GGH   VRS
Sbjct: 271 GHLDYLIGGLYHEKMDRLFVIGGTNTGKIHLLSCT-SAGLTHVTS----LHGGHAATVRS 330

Query: 92  VLPTTNVLGGFSQSQGVFGWTGGEDGRLCCW 123
                     ++ S+     TGGED +L  W
Sbjct: 331 FC--------WNVSEDSL-LTGGEDAQLLLW 347

[Close]

BLAST of Lsi03G010600 vs. ExPASy TrEMBL
Match: A0A6J1CNT7 (WD repeat-containing protein 89 homolog OS=Momordica charantia OX=3673 GN=LOC111013315 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.9e-80
Identity = 137/151 (90.73%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           SLWDW+DGRNEADITDARTLASNSW M HVDYLVDCHYSNEG RLWVLGGTNDGTVGYFP
Sbjct: 241 SLWDWSDGRNEADITDARTLASNSWKMDHVDYLVDCHYSNEGDRLWVLGGTNDGTVGYFP 300

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           +DH KGKNAIESP+++LEGGHVGVVRSVLP TNVLGGFSQSQGVFGWTGGEDGRLCCWCS
Sbjct: 301 VDHHKGKNAIESPNVVLEGGHVGVVRSVLPVTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 360

Query: 125 DDSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           DDSHE  RSWISSTLVIKSP ARRK+RHHPY
Sbjct: 361 DDSHETYRSWISSTLVIKSPSARRKHRHHPY 391

[Close]

BLAST of Lsi03G010600 vs. ExPASy TrEMBL
Match: A0A5A7TS28 (WD repeat-containing protein 89-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00980 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 137/151 (90.73%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           SLWDWTDGRNEADITDARTLASNSW MGHVDYLVDCHYS EG RLWVLGGTNDGTVGYFP
Sbjct: 241 SLWDWTDGRNEADITDARTLASNSWIMGHVDYLVDCHYSKEGCRLWVLGGTNDGTVGYFP 300

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           I+   GKNAIESPD++LEGGH+GVVRSVLPTTN+LGGFSQSQGVFGWTGGEDGRLCCW S
Sbjct: 301 INLCNGKNAIESPDVVLEGGHIGVVRSVLPTTNILGGFSQSQGVFGWTGGEDGRLCCWSS 360

Query: 125 DDSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           DDSHEMNRSWISSTLVIKSPG RRKNRH PY
Sbjct: 361 DDSHEMNRSWISSTLVIKSPGGRRKNRHQPY 391

[Close]

BLAST of Lsi03G010600 vs. ExPASy TrEMBL
Match: A0A1S3BZ68 (WD repeat-containing protein 89 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494779 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 137/151 (90.73%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           SLWDWTDGRNEADITDARTLASNSW MGHVDYLVDCHYS EG RLWVLGGTNDGTVGYFP
Sbjct: 181 SLWDWTDGRNEADITDARTLASNSWIMGHVDYLVDCHYSKEGCRLWVLGGTNDGTVGYFP 240

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           I+   GKNAIESPD++LEGGH+GVVRSVLPTTN+LGGFSQSQGVFGWTGGEDGRLCCW S
Sbjct: 241 INLCNGKNAIESPDVVLEGGHIGVVRSVLPTTNILGGFSQSQGVFGWTGGEDGRLCCWSS 300

Query: 125 DDSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           DDSHEMNRSWISSTLVIKSPG RRKNRH PY
Sbjct: 301 DDSHEMNRSWISSTLVIKSPGGRRKNRHQPY 331

[Close]

BLAST of Lsi03G010600 vs. ExPASy TrEMBL
Match: A0A1S3BYE3 (WD repeat-containing protein 89 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494779 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 137/151 (90.73%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           SLWDWTDGRNEADITDARTLASNSW MGHVDYLVDCHYS EG RLWVLGGTNDGTVGYFP
Sbjct: 241 SLWDWTDGRNEADITDARTLASNSWIMGHVDYLVDCHYSKEGCRLWVLGGTNDGTVGYFP 300

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           I+   GKNAIESPD++LEGGH+GVVRSVLPTTN+LGGFSQSQGVFGWTGGEDGRLCCW S
Sbjct: 301 INLCNGKNAIESPDVVLEGGHIGVVRSVLPTTNILGGFSQSQGVFGWTGGEDGRLCCWSS 360

Query: 125 DDSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           DDSHEMNRSWISSTLVIKSPG RRKNRH PY
Sbjct: 361 DDSHEMNRSWISSTLVIKSPGGRRKNRHQPY 391

[Close]

BLAST of Lsi03G010600 vs. ExPASy TrEMBL
Match: A0A0A0KWI9 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G001690 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.5e-79
Identity = 136/151 (90.07%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           SLWDWTDGRNEADITDARTLASN+W MGHVDYLVDCHYSNEG RLWVLGGTNDGTVGYFP
Sbjct: 241 SLWDWTDGRNEADITDARTLASNNWLMGHVDYLVDCHYSNEGCRLWVLGGTNDGTVGYFP 300

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           I+ S GK AIESPD++LEGGH+GVVRSVLPTTN+LGGFSQSQ VFGWTGGEDGRLCCW S
Sbjct: 301 INLSNGKTAIESPDVVLEGGHIGVVRSVLPTTNLLGGFSQSQSVFGWTGGEDGRLCCWSS 360

Query: 125 DDSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           DDS+EMNRSWISSTLVIKSPG RRKNRHHPY
Sbjct: 361 DDSYEMNRSWISSTLVIKSPGGRRKNRHHPY 391

[Close]

BLAST of Lsi03G010600 vs. NCBI nr
Match: XP_038906204.1 (WD repeat-containing protein GTS1 [Benincasa hispida])

HSP 1 Score: 307.8 bits (787), Expect = 5.5e-80
Identity = 136/151 (90.07%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           SLWDWTDGRNEADITDARTLASN WTMG VDYLVDCHYS+EG RLWVLGG+NDG +GYFP
Sbjct: 241 SLWDWTDGRNEADITDARTLASNCWTMGQVDYLVDCHYSSEGCRLWVLGGSNDGAIGYFP 300

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           IDHSKGKNAIESPDI+LEGGH+G++RSVLPTTN LGGFSQSQGVFGWTGGEDGRLCCW S
Sbjct: 301 IDHSKGKNAIESPDIVLEGGHIGIIRSVLPTTNFLGGFSQSQGVFGWTGGEDGRLCCWSS 360

Query: 125 DDSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           DDSHEMNRSWISS+LVIKSPG RRKNRHHPY
Sbjct: 361 DDSHEMNRSWISSSLVIKSPGVRRKNRHHPY 391

[Close]

BLAST of Lsi03G010600 vs. NCBI nr
Match: XP_022143440.1 (WD repeat-containing protein 89 homolog [Momordica charantia])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 137/151 (90.73%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           SLWDW+DGRNEADITDARTLASNSW M HVDYLVDCHYSNEG RLWVLGGTNDGTVGYFP
Sbjct: 241 SLWDWSDGRNEADITDARTLASNSWKMDHVDYLVDCHYSNEGDRLWVLGGTNDGTVGYFP 300

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           +DH KGKNAIESP+++LEGGHVGVVRSVLP TNVLGGFSQSQGVFGWTGGEDGRLCCWCS
Sbjct: 301 VDHHKGKNAIESPNVVLEGGHVGVVRSVLPVTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 360

Query: 125 DDSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           DDSHE  RSWISSTLVIKSP ARRK+RHHPY
Sbjct: 361 DDSHETYRSWISSTLVIKSPSARRKHRHHPY 391

[Close]

BLAST of Lsi03G010600 vs. NCBI nr
Match: KAG6606965.1 (WD repeat-containing protein GTS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036668.1 WD repeat-containing protein 89-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.8 bits (782), Expect = 2.1e-79
Identity = 135/151 (89.40%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYS+EG RLWVLGGTNDGTVGYFP
Sbjct: 241 SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSSEGDRLWVLGGTNDGTVGYFP 300

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           +DH KGKNAIESPD++LEGGH+G+VRSVLP TN+LGGFS+SQGVFGWTGGEDGRLCCW S
Sbjct: 301 VDHHKGKNAIESPDVVLEGGHIGIVRSVLPMTNILGGFSRSQGVFGWTGGEDGRLCCWSS 360

Query: 125 DDSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           DDS E NRSWISSTLVIKSPG RRK+RHHPY
Sbjct: 361 DDSCETNRSWISSTLVIKSPGGRRKHRHHPY 391

[Close]

BLAST of Lsi03G010600 vs. NCBI nr
Match: XP_008454356.1 (PREDICTED: WD repeat-containing protein 89 homolog isoform X1 [Cucumis melo] >KAA0044371.1 WD repeat-containing protein 89-like protein isoform X1 [Cucumis melo var. makuwa] >TYK29499.1 WD repeat-containing protein 89-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 6.0e-79
Identity = 137/151 (90.73%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           SLWDWTDGRNEADITDARTLASNSW MGHVDYLVDCHYS EG RLWVLGGTNDGTVGYFP
Sbjct: 241 SLWDWTDGRNEADITDARTLASNSWIMGHVDYLVDCHYSKEGCRLWVLGGTNDGTVGYFP 300

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           I+   GKNAIESPD++LEGGH+GVVRSVLPTTN+LGGFSQSQGVFGWTGGEDGRLCCW S
Sbjct: 301 INLCNGKNAIESPDVVLEGGHIGVVRSVLPTTNILGGFSQSQGVFGWTGGEDGRLCCWSS 360

Query: 125 DDSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           DDSHEMNRSWISSTLVIKSPG RRKNRH PY
Sbjct: 361 DDSHEMNRSWISSTLVIKSPGGRRKNRHQPY 391

[Close]

BLAST of Lsi03G010600 vs. NCBI nr
Match: XP_008454357.1 (PREDICTED: WD repeat-containing protein 89 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 6.0e-79
Identity = 137/151 (90.73%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           SLWDWTDGRNEADITDARTLASNSW MGHVDYLVDCHYS EG RLWVLGGTNDGTVGYFP
Sbjct: 181 SLWDWTDGRNEADITDARTLASNSWIMGHVDYLVDCHYSKEGCRLWVLGGTNDGTVGYFP 240

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           I+   GKNAIESPD++LEGGH+GVVRSVLPTTN+LGGFSQSQGVFGWTGGEDGRLCCW S
Sbjct: 241 INLCNGKNAIESPDVVLEGGHIGVVRSVLPTTNILGGFSQSQGVFGWTGGEDGRLCCWSS 300

Query: 125 DDSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           DDSHEMNRSWISSTLVIKSPG RRKNRH PY
Sbjct: 301 DDSHEMNRSWISSTLVIKSPGGRRKNRHQPY 331

[Close]

BLAST of Lsi03G010600 vs. TAIR 10
Match: AT2G47790.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 172.9 bits (437), Expect = 2.0e-43
Identity = 86/152 (56.58%), Postives = 106/152 (69.74%), Query Frame = 0


Query: 5   SLWDWTDGRNEADITDARTLASNSWTMGHVDYLVDCHYSNEGGRLWVLGGTNDGTVGYFP 64
           S+W+W DG  E ++  AR LAS+SWT  +VDY VDCH    G  LWV+GGT  GTVGYFP
Sbjct: 246 SIWNWEDGSCEVNLEKARELASDSWTQDNVDYFVDCHCPG-GEDLWVIGGTCAGTVGYFP 305

Query: 65  IDHSKGKNAIESPDIILEGGHVGVVRSVLPTTNVLGGFSQSQGVFGWTGGEDGRLCCWCS 124
           +++ K   +I + + IL GGH+ VVRSVL      GG   + G+FGWTGGEDGRLCCW S
Sbjct: 306 VNY-KQPGSIGTAEAILGGGHIDVVRSVLQMPGEYGG---AAGLFGWTGGEDGRLCCWKS 365

Query: 125 D-DSHEMNRSWISSTLVIKSPGARRKNRHHPY 156
           D D+ E+NRSW SS LV+K P  R+KNRH PY
Sbjct: 366 DEDATEINRSWTSSELVVKPPRNRKKNRHSPY 392

The following BLAST results are available for this feature:

BLAST of Lsi03G010600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q944S2	2.8e-42	56.58	WD repeat-containing protein GTS1 OS=Arabidopsis thaliana OX=3702 GN=GTS1 PE=2 S...	[more]
Q5FVP5	3.9e-04	33.02	WD repeat-containing protein 89 OS=Rattus norvegicus OX=10116 GN=Wdr89 PE=2 SV=1	[more]
Q9D0R9	5.1e-04	35.16	WD repeat-containing protein 89 OS=Mus musculus OX=10090 GN=Wdr89 PE=2 SV=1	[more]

BLAST of Lsi03G010600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNT7	5.9e-80	90.73	WD repeat-containing protein 89 homolog OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5A7TS28	2.9e-79	90.73	WD repeat-containing protein 89-like protein isoform X1 OS=Cucumis melo var. mak...	[more]
A0A1S3BZ68	2.9e-79	90.73	WD repeat-containing protein 89 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A1S3BYE3	2.9e-79	90.73	WD repeat-containing protein 89 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KWI9	8.5e-79	90.07	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G...	[more]

BLAST of Lsi03G010600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906204.1	5.5e-80	90.07	WD repeat-containing protein GTS1 [Benincasa hispida]	[more]
XP_022143440.1	1.2e-79	90.73	WD repeat-containing protein 89 homolog [Momordica charantia]	[more]
KAG6606965.1	2.1e-79	89.40	WD repeat-containing protein GTS1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008454356.1	6.0e-79	90.73	PREDICTED: WD repeat-containing protein 89 homolog isoform X1 [Cucumis melo] >KA...	[more]
XP_008454357.1	6.0e-79	90.73	PREDICTED: WD repeat-containing protein 89 homolog isoform X2 [Cucumis melo]	[more]

BLAST of Lsi03G010600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47790.1	2.0e-43	56.58	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039328	WD repeat-containing protein 89	PANTHER	PTHR22889	UNCHARACTERIZED	coord: 4..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G010600.1	Lsi03G010600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane