
Lsi03G010410 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGAGAATATTTTCGTAAAACTTGCAAACCTATTTTACATGTTATTTTGATTTTCTAGTGTTCTTTCATAGTTATTATTTTTATAATAGGACTTTTAGGATGGGCAAATCTTCATAAGCTCCTAGTTAACACATACTAATCTCAAATCAATATTTTTGTCATAACAATCTCAAAATTTCATTTAATTAATTATTGTATCAATAATGATCTCTATAAAAGAGGACAAAAGCAACCACTTTTCTCCTCACACCTTCACCACCAAACATTTAGAAAGAAATTAGAAGGAAAAAAAAAAAGAGTGTAAAAAGGAATGGATAATAATGAATCCTCTCTCAAGCTTCCCCTAATTGATTTCTCCAACCTAGAATTAGGGAGTCCCAAGTGGGAGTTGGCAAAAGCACAAGTGAAGGAAGCACTTGAGGAATTTGGTTGCTTTGAAGCCTCATTTGAGAAAGTGCCTCTTGAGGTTAGAAAGGGTTTGTTTGAAGCACTTGAAGAGCTTTTCAACCTTCCTTTGCAAACCAAATTGAGAAATGTTTCTCAGAAGCCCTTCCATGGCTATGTTGGACAATATCCAATGGCTCCACTTTTTGAAAGCATGGGTGTGGATGATTCCACCATACATGAAAAGGTCCAAAGCTTCACCAATATCTTGTGGCCTCAAGGAAACCCAACCTTTAGGTTTGTATATGTCTACAAATAATGCTATATTCTTTCCTCTTCCTTTTGATTTCATTCCATATTTTGAATTTGTGTTGTTGTTAATTATAAGATTAAGATTAGTTGATAAGTAACATTCTTATTTCTTGTTTGATGTTTCTCTTTGGGGTAGCTGCAAATTATAGCACAGTAAAAGAATTTGCAGATATAGCAAAATTTAGATTCAACTCTCAAAATCTCAGTGATAAACTATATCGCTAATAAGAGTTTATCATCGATAATAGTCTACCCGAGATAAAGTCTATCATTGATAAATTTTGCTATATTTGAAATTCTTTAAAAATATCGCTATACACTTAATTATTATCCCTAAAAGTACTACCCATTGCAATTACCATTCTCTTTTTCAAATTTTTTGAGTTCAACAATGAGTGGAGTAGGAGATTCAAACATCTGACCTCTCTTGATTGAGAGCATATGCCTTAACTAGTTATGAGCTATGCTATTTCTCGTTCAATCAAAAAATAATTGATTTGCGCCCTAGCAACGTTTTTTTAAATAGAGACTTTTATCATCGATTAGTTCAATAATTTTCGATTTTGTTTGACCCTTCTAATGAAGTAGGGTTTTTCTTTTCTTTCCAAAAATCTTTTTGACAGCAAAGTGATAGAATCCTATTCACAACAATTATCAGAACTAGACCAAATGGTGAGAAGGATGGTTTTGGAGAGTTTGGGAATTGAAAAATACTTGGAGGAACATTTGGAGTCAACAAACTATCTTCTTAGAGTGATGAAATACAAAGGCCCTCAAAGCAATGAGACACAACTTGGCCTTCATTCCCACACTGATAAGAACATTGTAACCATTTTATATCAAAATCATGTTGAAGGTTTGCAGGTACAAACCAAAGATGGCAAATGGATTAACTTTCAACCTTCCCCAAACTCCTTTGTTGCAATGATTGGAGATTCCCTCCATGTGAGTAACTTTTTTATTTCATTTGTTTTGTTTCATAGTGATTTTGTTTTTTAGTTTTATGTTCATGTTTGTTTGTTTGTGATTTTTTTGTTTTCTTTTGTGATATTCATTTTTTGAAGGTCATTTTATTAAAAATAAAAACAAATCATAGGCACTTTGTATTTTTTTTTCTTTTTGAAGATTAGTTGGGGATATTTAATTTGTTTTTATCATTATTTTAGTCTTGAACTTTTTTGGTAATATTATTTGCTTTAGTCTTTTGAGAATTGTTTGAATTGTCTTGTGCTTATTGTGTTTCAATCTCTAAATTTATTAACTTATTATTATTAAAAAAGTAATGAATTTTTTAGGGAAGATTTTTAAAAATAGAAAATAAGGAAAACTATTTACACAAAATAGTAAAATTTTTAGATAGTTGTGATAGACCTTGATAGAAGTTTATCACTAATAGATGTTGATAGAAGTCTATCAATGTCCATCTGTATTTTTCCTAGAAAAAATGTCAAACTATTTACAGAAAATAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTGGTAGACATTGATAGACTTCTATTAGAATTTATCACTGATAGAATTCTATCATTGATTTCTATCACGGATAGACTTTGATAGACTTCTATCAGTGTCTATCATAACTATCTAAATTTTTTTCTATTTTGTGTAAATAGTTCCCTTATTTTTCTATTTTAAAAATTCCTCTTTTTTCTATCTGTGAACATTTTTTATTTTTTACTGGTATTTTTTTAATAAATAAGTCTAAATGTTATGGTCTTTATGTTTATCTATGCAGTAAGTAGATTTGTCCGTTACAATAAACATAAAGACCATAAAATTTAGACTTATTTATTAAAAAAAATACCAGTAAAAAATGAAAAATTTTCACAGATAGAAAAAAGAGGAATTTTTAAAATAGAAAAATAAGAGAACTATTTACACAAAATATAAAAAAAAATTTGGAGTGATTTTAAAATTGTTAAAATCACTTTTGTCATTTTTAAAATCACTAATAAACACACTTTAATCACTCAAAATTAATTTAATTTTCAATTTTACACTTTTAAATGCAATTTTCAATCATCAAAATTAGTTTTGAAGGATTAAAAATATATTTCACGGTAATTTTGAAAATGACAAAAGTGATTTTAGTTATTTTAAAATCACTTTCAAATATGTCCTAAGGATATGCATTGAGATGATAAATTAATAAAATTTAACCACAATGATTAAACTCAAAGAAAAAAAAACCAATAGAAGAAAGTTTAAAATAAAACATGAAAAGTTGAAGAGAGAGAGAATTCAAACCTTACTTTTCTCTCTTTATAAGAAAAAAGTATTCAAATTTGATTTTAAAAAAAGTAGAAATAATTTTTTTTTTTTAACTACATTATCAAACAAGACCGTAAAATATTATTGAACCCAACACAACGTATTATCATACGAAAATTTTCAACCCATAAGAGTTGCAAAGTGAAAAGCACTATATATTATTTGAACATTTATTAACGTATTTAGATCAAATACTTTCTTACCATTTAGAAAAATTCGATTAAGTGACCGTCAGATTACGACGATGGTTAATGTAGGCATGGACAAATGGAAGATTGCATTCTCCATATCATAGAGTGATGATGAGTGGAGAGGAAGCAAGGTACTCAGCTGGGTTATTCTCAATCCCAAAAGCAGGATATATAATCAAAGCACCAAAAGAACTTATAGATGAACAACATCCTTTGCTCTTCAACCCATTTGATCATGTTGAGTTTCTTCAGTTCTACTACACAGAAGCTGGCCAAAGAGCTCAATCTGCCCTCAAAACTTATTGTGGTGCAACTTGA TGAGAATATTTTCGTAAAACTTGCAAACCTATTTTACATGTTATTTTGATTTTCTAGTGTTCTTTCATAGTTATTATTTTTATAATAGGACTTTTAGGATGGGCAAATCTTCATAAGCTCCTAGTTAACACATACTAATCTCAAATCAATATTTTTGTCATAACAATCTCAAAATTTCATTTAATTAATTATTGTATCAATAATGATCTCTATAAAAGAGGACAAAAGCAACCACTTTTCTCCTCACACCTTCACCACCAAACATTTAGAAAGAAATTAGAAGGAAAAAAAAAAAGAGTGTAAAAAGGAATGGATAATAATGAATCCTCTCTCAAGCTTCCCCTAATTGATTTCTCCAACCTAGAATTAGGGAGTCCCAAGTGGGAGTTGGCAAAAGCACAAGTGAAGGAAGCACTTGAGGAATTTGGTTGCTTTGAAGCCTCATTTGAGAAAGTGCCTCTTGAGGTTAGAAAGGGTTTGTTTGAAGCACTTGAAGAGCTTTTCAACCTTCCTTTGCAAACCAAATTGAGAAATGTTTCTCAGAAGCCCTTCCATGGCTATGTTGGACAATATCCAATGGCTCCACTTTTTGAAAGCATGGGTGTGGATGATTCCACCATACATGAAAAGGTCCAAAGCTTCACCAATATCTTGTGGCCTCAAGGAAACCCAACCTTTAGAGTGATGATGAGTGGAGAGGAAGCAAGGTACTCAGCTGGGTTATTCTCAATCCCAAAAGCAGGATATATAATCAAAGCACCAAAAGAACTTATAGATGAACAACATCCTTTGCTCTTCAACCCATTTGATCATGTTGAGTTTCTTCAGTTCTACTACACAGAAGCTGGCCAAAGAGCTCAATCTGCCCTCAAAACTTATTGTGGTGCAACTTGA ATGGATAATAATGAATCCTCTCTCAAGCTTCCCCTAATTGATTTCTCCAACCTAGAATTAGGGAGTCCCAAGTGGGAGTTGGCAAAAGCACAAGTGAAGGAAGCACTTGAGGAATTTGGTTGCTTTGAAGCCTCATTTGAGAAAGTGCCTCTTGAGGTTAGAAAGGGTTTGTTTGAAGCACTTGAAGAGCTTTTCAACCTTCCTTTGCAAACCAAATTGAGAAATGTTTCTCAGAAGCCCTTCCATGGCTATGTTGGACAATATCCAATGGCTCCACTTTTTGAAAGCATGGGTGTGGATGATTCCACCATACATGAAAAGGTCCAAAGCTTCACCAATATCTTGTGGCCTCAAGGAAACCCAACCTTTAGAGTGATGATGAGTGGAGAGGAAGCAAGGTACTCAGCTGGGTTATTCTCAATCCCAAAAGCAGGATATATAATCAAAGCACCAAAAGAACTTATAGATGAACAACATCCTTTGCTCTTCAACCCATTTGATCATGTTGAGTTTCTTCAGTTCTACTACACAGAAGCTGGCCAAAGAGCTCAATCTGCCCTCAAAACTTATTGTGGTGCAACTTGA MDNNESSLKLPLIDFSNLELGSPKWELAKAQVKEALEEFGCFEASFEKVPLEVRKGLFEALEELFNLPLQTKLRNVSQKPFHGYVGQYPMAPLFESMGVDDSTIHEKVQSFTNILWPQGNPTFRVMMSGEEARYSAGLFSIPKAGYIIKAPKELIDEQHPLLFNPFDHVEFLQFYYTEAGQRAQSALKTYCGAT Homology
BLAST of Lsi03G010410 vs. ExPASy Swiss-Prot
Match: Q945B6 (Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 OS=Arabidopsis thaliana OX=3702 GN=AOP1.2 PE=2 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 4.7e-39 Identity = 102/312 (32.69%), Postives = 140/312 (44.87%), Query Frame = 0
BLAST of Lsi03G010410 vs. ExPASy Swiss-Prot
Match: Q9ZTA3 (Probable 2-oxoglutarate-dependent dioxygenase AOP1 OS=Arabidopsis thaliana OX=3702 GN=AOP1 PE=2 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 2.3e-38 Identity = 101/313 (32.27%), Postives = 140/313 (44.73%), Query Frame = 0
BLAST of Lsi03G010410 vs. ExPASy Swiss-Prot
Match: Q944Z5 (Probable 2-oxoglutarate-dependent dioxygenase AOP1 (Fragment) OS=Arabidopsis thaliana OX=3702 GN=AOP1 PE=2 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 5.3e-35 Identity = 95/302 (31.46%), Postives = 133/302 (44.04%), Query Frame = 0
BLAST of Lsi03G010410 vs. ExPASy Swiss-Prot
Match: A0A0N9HQ36 (Deoxypodophyllotoxin synthase OS=Sinopodophyllum hexandrum OX=93608 GN=2-ODD PE=1 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 9.4e-24 Identity = 84/303 (27.72%), Postives = 116/303 (38.28%), Query Frame = 0
BLAST of Lsi03G010410 vs. ExPASy Swiss-Prot
Match: Q945B5 (2-oxoglutarate-dependent dioxygenase AOP2 OS=Arabidopsis thaliana OX=3702 GN=AOP2 PE=2 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 9.4e-24 Identity = 54/116 (46.55%), Postives = 82/116 (70.69%), Query Frame = 0
HSP 2 Score: 80.5 bits (197), Expect = 2.3e-14 Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 0
BLAST of Lsi03G010410 vs. ExPASy TrEMBL
Match: A0A5A7TQH0 (Putative 2-oxoglutarate-dependent dioxygenase AOP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00840 PE=4 SV=1) HSP 1 Score: 370.9 bits (951), Expect = 3.2e-99 Identity = 175/192 (91.15%), Postives = 186/192 (96.88%), Query Frame = 0
BLAST of Lsi03G010410 vs. ExPASy TrEMBL
Match: A0A1S3BYJ6 (probable 2-oxoglutarate-dependent dioxygenase AOP1 OS=Cucumis melo OX=3656 GN=LOC103494791 PE=3 SV=1) HSP 1 Score: 320.1 bits (819), Expect = 6.4e-84 Identity = 175/313 (55.91%), Postives = 186/313 (59.42%), Query Frame = 0
BLAST of Lsi03G010410 vs. ExPASy TrEMBL
Match: A0A6J1CQP5 (probable 2-oxoglutarate-dependent dioxygenase AOP1.2 OS=Momordica charantia OX=3673 GN=LOC111013275 PE=3 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 3.9e-81 Identity = 172/309 (55.66%), Postives = 183/309 (59.22%), Query Frame = 0
BLAST of Lsi03G010410 vs. ExPASy TrEMBL
Match: A0A6J1F3R6 (probable 2-oxoglutarate-dependent dioxygenase AOP1 OS=Cucurbita moschata OX=3662 GN=LOC111441851 PE=3 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 7.4e-80 Identity = 171/311 (54.98%), Postives = 182/311 (58.52%), Query Frame = 0
BLAST of Lsi03G010410 vs. ExPASy TrEMBL
Match: A0A6J1J6J6 (probable 2-oxoglutarate-dependent dioxygenase AOP1 OS=Cucurbita maxima OX=3661 GN=LOC111482215 PE=3 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79 Identity = 171/311 (54.98%), Postives = 182/311 (58.52%), Query Frame = 0
BLAST of Lsi03G010410 vs. NCBI nr
Match: KAA0044356.1 (putative 2-oxoglutarate-dependent dioxygenase AOP1 [Cucumis melo var. makuwa] >TYK29485.1 putative 2-oxoglutarate-dependent dioxygenase AOP1 [Cucumis melo var. makuwa]) HSP 1 Score: 370.9 bits (951), Expect = 6.6e-99 Identity = 175/192 (91.15%), Postives = 186/192 (96.88%), Query Frame = 0
BLAST of Lsi03G010410 vs. NCBI nr
Match: XP_004152262.1 (probable 2-oxoglutarate-dependent dioxygenase AOP1 [Cucumis sativus] >KAE8649036.1 hypothetical protein Csa_014516 [Cucumis sativus]) HSP 1 Score: 321.6 bits (823), Expect = 4.6e-84 Identity = 176/313 (56.23%), Postives = 187/313 (59.74%), Query Frame = 0
BLAST of Lsi03G010410 vs. NCBI nr
Match: XP_038906019.1 (probable 2-oxoglutarate-dependent dioxygenase AOP1.2 [Benincasa hispida]) HSP 1 Score: 320.1 bits (819), Expect = 1.3e-83 Identity = 177/312 (56.73%), Postives = 187/312 (59.94%), Query Frame = 0
BLAST of Lsi03G010410 vs. NCBI nr
Match: XP_008454372.1 (PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Cucumis melo]) HSP 1 Score: 320.1 bits (819), Expect = 1.3e-83 Identity = 175/313 (55.91%), Postives = 186/313 (59.42%), Query Frame = 0
BLAST of Lsi03G010410 vs. NCBI nr
Match: XP_022143397.1 (probable 2-oxoglutarate-dependent dioxygenase AOP1.2 [Momordica charantia]) HSP 1 Score: 310.8 bits (795), Expect = 8.1e-81 Identity = 172/309 (55.66%), Postives = 183/309 (59.22%), Query Frame = 0
BLAST of Lsi03G010410 vs. TAIR 10
Match: AT1G52820.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ) HSP 1 Score: 242.3 bits (617), Expect = 3.3e-64 Identity = 134/307 (43.65%), Postives = 162/307 (52.77%), Query Frame = 0
BLAST of Lsi03G010410 vs. TAIR 10
Match: AT1G52810.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ) HSP 1 Score: 166.8 bits (421), Expect = 1.8e-41 Identity = 98/280 (35.00%), Postives = 136/280 (48.57%), Query Frame = 0
BLAST of Lsi03G010410 vs. TAIR 10
Match: AT4G03070.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ) HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39 Identity = 101/313 (32.27%), Postives = 140/313 (44.73%), Query Frame = 0
BLAST of Lsi03G010410 vs. TAIR 10
Match: AT1G52790.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ) HSP 1 Score: 138.3 bits (347), Expect = 6.7e-33 Identity = 86/310 (27.74%), Postives = 130/310 (41.94%), Query Frame = 0
BLAST of Lsi03G010410 vs. TAIR 10
Match: AT1G52800.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ) HSP 1 Score: 135.6 bits (340), Expect = 4.3e-32 Identity = 84/307 (27.36%), Postives = 125/307 (40.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|