Lsi03G010370 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G010370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	calponin homology domain-containing protein DDB_G0272472
Location	chr03: 19913373 .. 19914648 (-)
RNA-Seq Expression	Lsi03G010370
Synteny	Lsi03G010370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACTTTCCAATTTTCAAAAAAGAAAAAAGAAAATTAAACACAGTTCTCTCTCTCGTTGATTCAGAGAAAAATTCCAGCGCAAGAAAGGAAAATAATTCGACATTTCTCTCATTGCAATTGATTCAAACATCTTTCACGTCAAATCTGTTTGATTTCTGAAAGCTTGATTGTCTTCAACCTGCTGCATTTCTGAGAAGATCAGCCATGGATTCATCTTTCTTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTATTTCTGCAAGCTCGAAAAGTGGAAGGGTAAATGTTCTTATTTGGAAAAATTCTGCGTTTGAACAATTTCTGTTTCTTGATTTGAATTCTTTTCGTTTTTTCTTTTAATTCTGTTTTCTTTCTCGCAACTGGATGTTATCTGGAATTGAAAAGTGGAAGTGGAAGTATTCATTTAACTATTTTTAAACGATGGTGATTGTTTCTGACTTCGATTTTTAGAATCCTTTTTCGACTTGTGTAGAACCGAATCGGTATTTTGTAAACCCTAATGATTCAAGTGATTGATCCCTTTTCTTTCGATTCAATTATATTAGACTAGAATCTGTTAAATCTCCACTGCAACGAAGTGGAATGAGACTCAGACAATGAACTGTAGAGTTCCGATTTGAAACCTTTATTGTTACCGTATATGTATTATGTGAAAATTAGCAACATCTAAGGCTAATTTAATTGATTTCTTGTTTGATTCTTTCTTTGTATATTTATATCCTATGAATCTTCCTTGTAAATCATTCAGAATATATTCAATAAAATATACACATTCACATGTACATCTCTACATCCATTTCTATGCAGAAAGAATCAAATAAGAAAACAACTAAGGCCAATTTAGATTGACTTTCTAAGTATTTATAAACATTTTTTTTTGCACTTACAAATACTAATTCAAACACTTAGAAAGTCAATCCAAACGGACCCTAAATTAGAAATCTTGCTAATTTACAACTCACATAATACGTATACGGTAACATTTGTTGTGAATGTTAACCTTTTTTCTTCTTGATACACTGATCACAGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGGCCTTAACAAATTTACATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCAGTCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAAAATGCTGCAGGTTTAG

mRNA sequence

CTACTTTCCAATTTTCAAAAAAGAAAAAAGAAAATTAAACACAGTTCTCTCTCTCGTTGATTCAGAGAAAAATTCCAGCGCAAGAAAGGAAAATAATTCGACATTTCTCTCATTGCAATTGATTCAAACATCTTTCACGTCAAATCTGTTTGATTTCTGAAAGCTTGATTGTCTTCAACCTGCTGCATTTCTGAGAAGATCAGCCATGGATTCATCTTTCTTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTATTTCTGCAAGCTCGAAAAGTGGAAGGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGGCCTTAACAAATTTACATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCAGTCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAAAATGCTGCAGGTTTAG

Coding sequence (CDS)

ATGGATTCATCTTTCTTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTATTTCTGCAAGCTCGAAAAGTGGAAGGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGGCCTTAACAAATTTACATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCAGTCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAAAATGCTGCAGGTTTAG

Protein sequence

MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQV

Homology

[Close]

BLAST of Lsi03G010370 vs. ExPASy TrEMBL
Match: A0A6J1FLR6 (uncharacterized protein LOC111446963 OS=Cucurbita moschata OX=3662 GN=LOC111446963 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.1e-34
Identity = 82/98 (83.67%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+  NLDSVSAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMHGL
Sbjct: 1  MDSACSNLDSVSASEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKVSPINWFPRKKVDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. ExPASy TrEMBL
Match: A0A6J1JYB3 (calponin homology domain-containing protein DDB_G0272472 OS=Cucurbita maxima OX=3661 GN=LOC111488980 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.9e-33
Identity = 79/98 (80.61%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+  NLDSVSAS++R N   AIDSESKKD+SGE +SASSKSGRSKF KET+QS+MHG+
Sbjct: 1  MDSACSNLDSVSASEDRGNNFIAIDSESKKDESGETVSASSKSGRSKFLKETNQSSMHGV 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKVSPINWFPRKKVDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. ExPASy TrEMBL
Match: A0A6J1D550 (uncharacterized protein LOC111017696 OS=Momordica charantia OX=3673 GN=LOC111017696 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.7e-32
Identity = 77/98 (78.57%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MD    N+DSVSAS+ R+ ++TA++SESK DDSGEP+SASSKSGRSK SKET+QST+HGL
Sbjct: 1  MDLGCSNVDSVSASEKRAREITAVNSESKNDDSGEPVSASSKSGRSKVSKETNQSTIHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKVSPINWFPRKKVDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. ExPASy TrEMBL
Match: A0A5A7TM27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00790 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+ LNLDSV  ++N SN+  A+DS+SKKDDSGEP+SA SKSGRSKF KET+QS MHGL
Sbjct: 1  MDSACLNLDSVPTTENHSNEFIAVDSQSKKDDSGEPVSAISKSGRSKFLKETTQSAMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKP  RKVSP+KWFPRKN+DSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPTRRKVSPIKWFPRKNMDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. ExPASy TrEMBL
Match: A0A1S3BXZ4 (LOW QUALITY PROTEIN: uncharacterized protein LOC103494795 OS=Cucumis melo OX=3656 GN=LOC103494795 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+ LNLDSV  ++N SN+  A+DS+SKKDDSGEP+SA SKSGRSKF KET+QS MHGL
Sbjct: 1  MDSACLNLDSVPTTENHSNEFIAVDSQSKKDDSGEPVSAISKSGRSKFLKETTQSAMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKP  RKVSP+KWFPRKN+DSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPTRRKVSPIKWFPRKNMDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. NCBI nr
Match: XP_038903669.1 (uncharacterized protein LOC120090199 isoform X1 [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 2.0e-35
Identity = 82/98 (83.67%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS++LNL+SVSASKNRSN+ T IDSE+KK+DS EP+SA ++SGRSKF KETSQS MHGL
Sbjct: 1  MDSAYLNLESVSASKNRSNEFTDIDSENKKNDSSEPVSAKARSGRSKFLKETSQSIMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRKVSP+KWFPRKNVDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKVSPIKWFPRKNVDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. NCBI nr
Match: XP_022941676.1 (uncharacterized protein LOC111446963 [Cucurbita moschata])

HSP 1 Score: 154.1 bits (388), Expect = 6.4e-34
Identity = 82/98 (83.67%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+  NLDSVSAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMHGL
Sbjct: 1  MDSACSNLDSVSASEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKVSPINWFPRKKVDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. NCBI nr
Match: KAG7030955.1 (hypothetical protein SDJN02_04992 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.1 bits (388), Expect = 6.4e-34
Identity = 82/98 (83.67%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+  NLDSVSAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMHGL
Sbjct: 1  MDSACSNLDSVSASEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKVSPINWFPRKKVDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. NCBI nr
Match: KAG6600295.1 (hypothetical protein SDJN03_05528, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+  NLDS+SAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMHGL
Sbjct: 1  MDSACSNLDSLSASEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKVSPINWFPRKKVDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. NCBI nr
Match: XP_023526939.1 (uncharacterized protein LOC111790309 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 80/98 (81.63%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+  NLDS S S++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMHGL
Sbjct: 1  MDSACSNLDSGSGSEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRKVSP+ WFPRK VDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKVSPINWFPRKKVDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. TAIR 10
Match: AT1G49870.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 6518 Blast hits to 5022 proteins in 522 species: Archae - 49; Bacteria - 635; Metazoa - 3264; Fungi - 379; Plants - 242; Viruses - 9; Other Eukaryotes - 1940 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 32 DSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLK 91
          D  E  S+ SK G++K  +ETS      L K  SQ K+   RK SP+ WFPR+  DSYL 
Sbjct: 27 DHLECSSSPSKLGKNKSPRETS-----ALRK--SQSKRSSQRKTSPLGWFPRRKGDSYLN 86

Query: 92 RKIKMLQ 99
          RKIK LQ
Sbjct: 87 RKIKKLQ 86

[Close]

BLAST of Lsi03G010370 vs. TAIR 10
Match: AT1G49870.2 (unknown protein; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 6.7e-05
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 0


Query: 65 SQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          SQ K+   RK SP+ WFPR+  DSYL RKIK LQ
Sbjct: 15 SQSKRSSQRKTSPLGWFPRRKGDSYLNRKIKKLQ 48

The following BLAST results are available for this feature:

BLAST of Lsi03G010370 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G010370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLR6	3.1e-34	83.67	uncharacterized protein LOC111446963 OS=Cucurbita moschata OX=3662 GN=LOC1114469...	[more]
A0A6J1JYB3	5.9e-33	80.61	calponin homology domain-containing protein DDB_G0272472 OS=Cucurbita maxima OX=...	[more]
A0A6J1D550	1.7e-32	78.57	uncharacterized protein LOC111017696 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5A7TM27	2.2e-32	78.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BXZ4	2.2e-32	78.57	LOW QUALITY PROTEIN: uncharacterized protein LOC103494795 OS=Cucumis melo OX=365...	[more]

BLAST of Lsi03G010370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903669.1	2.0e-35	83.67	uncharacterized protein LOC120090199 isoform X1 [Benincasa hispida]	[more]
XP_022941676.1	6.4e-34	83.67	uncharacterized protein LOC111446963 [Cucurbita moschata]	[more]
KAG7030955.1	6.4e-34	83.67	hypothetical protein SDJN02_04992 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6600295.1	1.4e-33	82.65	hypothetical protein SDJN03_05528, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023526939.1	1.2e-32	81.63	uncharacterized protein LOC111790309 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi03G010370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49870.1	1.3e-05	49.25	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXP...	[more]
AT1G49870.2	6.7e-05	61.76	unknown protein; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature e...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR36325	MYOSIN-2 HEAVY CHAIN-LIKE PROTEIN	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G010370.1	Lsi03G010370.1	mRNA