Lsi03G009440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G009440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	30S ribosomal protein S11
Location	chr03: 18036329 .. 18039252 (+)
RNA-Seq Expression	Lsi03G009440
Synteny	Lsi03G009440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCAATATATACATTTGAAGAAAGTAGGGCACCCTCTATGTTTCATCATCCACTAAGAGAGGAAAAGAATTAGGGTTTTTTCTTTTCAGCACTTCTTATTCACAGAACCACCGCCTGCGGCCGTCCGGCGACGATGCCGAAACTTTCCCTCTCTCACCTCTCTTCTCTCTTCCGCTCGTCCTCTCTCCGTCATGGCCCTTCATTTTCTCCATCTCGCCTCTCCATTTCTCCATTCATTGGCTCAGATTCGCGTTCTTCCATGTCCTCTTTCCACCGATCAGATCTCACTGGATCCGTTCAACTAGAAAAGCAAGTCTCAGGTGAATTATATTCTCTATTTTCTATCTGATATGGGAAATGGCAATTCGAATTTATGGAGTGTTTTTCTTTAATGATGCGGATTGCAGGGTGTCTCGACCTTTCGCAAGGTGATTCTGCGAATGTTGGTCGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAGGGTTCTTGTTGGGGTTTGGCGCGTTCAGGTGAAAGTGTCTCCGTTCCTTATTCTACTAGCTCTAGATGTTATGGACAGTACGACAACCGGCCAAATGCTGATACAGGAAGAAATCTGAAGTCTATGAGTTTTGTTAGGGGAATTTTAGAGGAAGATGGAAAGGATTTTATGGGTAGTTCTCAGTTCCCTGGACCACCCAATATGGAACACAATGCTGATATTGTTCATTTAAAGATGTTGCGTAACAATATATTTATCACTGTCACGGATAACAAGGGAAATACAAAGCTCAAGGCCTCAGCTGGTCGTCTTGAAGAACTGAAAGGAGGGGCTAGAATGTCCCGTTTTGCTGCTAACACAGTTGCAGAGTATGTTGGTCGTGAATCTCGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTGAAAGGCTTTGCTTTTTTTAAGAGGAAAAGGCAAACGATCATGAGTTGGAGAGATGGATTTACTGATTCTAGAAGTGATCAAAATCCGATTGTCTACGTTGAAGATACTACAAGACGTGCTCACAATGGTTGCCGACTCCGAAAGCAACGCCGAACCTAGATGTATGATGCTAGATCTTGCTCATACAACAGAAAATTGGTGATGAGGTCTTTGTTTTATCTTTGTTGGCTCGGTTCGAAGTGATGTAGCTTGGCTTGAGTTTTTACTTGCTTATTTCCATAAGGATGACAATTCGGATGTTTCTATATGCATCATTGTAAAATTTTCCTGGTTTAAATTGATGTAGCTTGCCTTCAAGTTCTTACTTGCTTATTGCAATAATGATGACAATAGGATGGTTTTCTATATACGTCAGTGTAAAACAATTGCTTTCTAGTTAGTACCATTTGGAATTCATTTCAATAGAACGATATCAAGAATTCAAGTGGCCCCAGTTTCCAATCTTTTTACTTGGAAGTTTATTTTCTTCTGTTACACTCTAGACTCTGTCGTGGATTACACATTTCTTGGATCTTACTTCTGTGCTTCTCAGTTCTCTATCTGACCTCCTTGCTTAGGATTCTTGTTTTACCTTTTGCATAAAAGATTTTGGTTTCTAATTGTGACCTGATTACGCCAACAGTATGAAGACAACGGAAGGCCGCTCCTGACTGGCATAACTACAGGACTGAGAGAGCTATTACAGTGAATTGACCAATGTTTTTGTGTGCTGAAGGTTTTTATGTAGATTTGCAGGCTTTCTGATCATTGATGCTGGATGTATACTCTGGATATGGACCCTCAGCATGGATGGGCAAATGGACACAGCATGGGAGATTCAGAATTGTTTGGTAACAGAAAATTTTACCAAATGTTCTAGAACCAGAAAGCCTCCATTGATAATTGGTAGAGGAAGGTGTTCCATACAGTTCTGAATAGAAGGATGGAGCAATAAAGGTACTCAGACTGATAAATTGAAATGCTATCTACAATTTTGTTCCTTAGTACGATGGCTCAGTTGAAGTTGCTGCGCCCATGGAGCAATAAAAGACATCATGTGGAAGCTGACTTGAAAATCTTAATAATAATAATTATTATTATTTTTGTGATCTTATCTATGTGAAACTGTTGCTTCTGGTTTAAAAAGAAAAAGAAATTCTTGAGTCAAAGTAATTAGTATGACGTTCCACCTTAGAGGTCGAAAATTCGATCTACCATCCTCACAGTTGTTATATTAAAATTTTTTTTTAATTTTTTGGAGGGTTAAATTATAGGTTCAAGTCTTTAAACTTTGTGTCTATTTGGTCTCTTAATTTTCTAAAGTATCTATCTAGTAAGATCTAAACGTTTAATTTTGTGTTTAGTTGATTTTTGAACTTGAGATATAAATTTGAAATTTATATCTAGTGGGAGCTTAAATTTTCAATTTTATGTCAAATAAGGTACGAAAAGTAAAAAAAAAAAAAATTGAATTTGCTTATGTGGGAAGTTACTAATTCTTGTCTTAATATCATTGATAGACTTCAAAAGCGTTATCCATGGGTCAATTTATCTCCATCTTGGTGCTGCCAATGTCAATAAGTTATCCATCATATTTTCTTCAATTCTTCTTCAAAAGGATTTTGTCGGAATTCTTCACAAGTTTCAGCTGGTCCATGGTCCTCCGAACGACACCGTTTATTATTCATCGATCTTTCTTTTAAAGCAACTAAAGATCATTTATGGATGCATTATATGTGGGGTTTTGTGGAAGATTTGGGATGAAAGAAATGCAAGGATGTTGACAATGGACAAGAGACTTTGCTTCCTCTGAAAAGGAGGAAGATTAAAAATATCTCTTGCCGGGGCTACAGCTTGAGCTTACCAAAACCATCCTGATTTCTCTTTCACCATTCATCCCCTGCCATTTTTGATGGACTGCAGTGGCTCTATGGATTGGATCAAATTAATATTTGAAAAGAGAGAAATGAT

mRNA sequence

AGTCAATATATACATTTGAAGAAAGTAGGGCACCCTCTATGTTTCATCATCCACTAAGAGAGGAAAAGAATTAGGGTTTTTTCTTTTCAGCACTTCTTATTCACAGAACCACCGCCTGCGGCCGTCCGGCGACGATGCCGAAACTTTCCCTCTCTCACCTCTCTTCTCTCTTCCGCTCGTCCTCTCTCCGTCATGGCCCTTCATTTTCTCCATCTCGCCTCTCCATTTCTCCATTCATTGGCTCAGATTCGCGTTCTTCCATGTCCTCTTTCCACCGATCAGATCTCACTGGATCCGTTCAACTAGAAAAGCAAGTCTCAGGGTGTCTCGACCTTTCGCAAGGTGATTCTGCGAATGTTGGTCGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAGGGTTCTTGTTGGGGTTTGGCGCGTTCAGGTGAAAGTGTCTCCGTTCCTTATTCTACTAGCTCTAGATGTTATGGACAGTACGACAACCGGCCAAATGCTGATACAGGAAGAAATCTGAAGTCTATGAGTTTTGTTAGGGGAATTTTAGAGGAAGATGGAAAGGATTTTATGGGTAGTTCTCAGTTCCCTGGACCACCCAATATGGAACACAATGCTGATATTGTTCATTTAAAGATGTTGCGTAACAATATATTTATCACTGTCACGGATAACAAGGGAAATACAAAGCTCAAGGCCTCAGCTGGTCGTCTTGAAGAACTGAAAGGAGGGGCTAGAATGTCCCGTTTTGCTGCTAACACAGTTGCAGAGTATGTTGGTCGTGAATCTCGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTGAAAGGCTTTGCTTTTTTTAAGAGGAAAAGGCAAACGATCATGAGTTGGAGAGATGGATTTACTGATTCTAGAAGTGATCAAAATCCGATTGTCTACGTTGAAGATACTACAAGACGTGCTCACAATGGTTGCCGACTCCGAAAGCAACGCCGAACCTAGATGTATGATGCTAGATCTTGCTCATACAACAGAAAATTGGTGATGAGGTCTTTGTTTTATCTTTGTTGGCTCGGTTCGAAGTGATGTAGCTTGGCTTGAGTTTTTACTTGCTTATTTCCATAAGGATGACAATTCGGATGTTTCTATATGCATCATTGTAAAATTTTCCTGGTTTAAATTGATGTAGCTTGCCTTCAAGTTCTTACTTGCTTATTGCAATAATGATGACAATAGGATGGTTTTCTATATACGTCAGTGTAAAACAATTGCTTTCTAGTTAGTACCATTTGGAATTCATTTCAATAGAACGATATCAAGAATTCAAGTGGCCCCAGTTTCCAATCTTTTTACTTGGAAGTTTATTTTCTTCTGTTACACTCTAGACTCTGTCGTGGATTACACATTTCTTGGATCTTACTTCTGTGCTTCTCAGTTCTCTATCTGACCTCCTTGCTTAGGATTCTTGTTTTACCTTTTGCATAAAAGATTTTGGTTTCTAATTGTGACCTGATTACGCCAACAGTATGAAGACAACGGAAGGCCGCTCCTGACTGGCATAACTACAGGACTGAGAGAGCTATTACAGTGAATTGACCAATGTTTTTGTGTGCTGAAGGTTTTTATGTAGATTTGCAGGCTTTCTGATCATTGATGCTGGATGTATACTCTGGATATGGACCCTCAGCATGGATGGGCAAATGGACACAGCATGGGAGATTCAGAATTGTTTGGTAACAGAAAATTTTACCAAATGTTCTAGAACCAGAAAGCCTCCATTGATAATTGGTAGAGGAAGGTGTTCCATACAGTTCTGAATAGAAGGATGGAGCAATAAAGACTTCAAAAGCGTTATCCATGGGTCAATTTATCTCCATCTTGGTGCTGCCAATGTCAATAAGTTATCCATCATATTTTCTTCAATTCTTCTTCAAAAGGATTTTGTCGGAATTCTTCACAAGTTTCAGCTGGTCCATGGTCCTCCGAACGACACCGTTTATTATTCATCGATCTTTCTTTTAAAGCAACTAAAGATCATTTATGGATGCATTATATGTGGGGTTTTGTGGAAGATTTGGGATGAAAGAAATGCAAGGATGTTGACAATGGACAAGAGACTTTGCTTCCTCTGAAAAGGAGGAAGATTAAAAATATCTCTTGCCGGGGCTACAGCTTGAGCTTACCAAAACCATCCTGATTTCTCTTTCACCATTCATCCCCTGCCATTTTTGATGGACTGCAGTGGCTCTATGGATTGGATCAAATTAATATTTGAAAAGAGAGAAATGAT

Coding sequence (CDS)

ATGCCGAAACTTTCCCTCTCTCACCTCTCTTCTCTCTTCCGCTCGTCCTCTCTCCGTCATGGCCCTTCATTTTCTCCATCTCGCCTCTCCATTTCTCCATTCATTGGCTCAGATTCGCGTTCTTCCATGTCCTCTTTCCACCGATCAGATCTCACTGGATCCGTTCAACTAGAAAAGCAAGTCTCAGGGTGTCTCGACCTTTCGCAAGGTGATTCTGCGAATGTTGGTCGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAGGGTTCTTGTTGGGGTTTGGCGCGTTCAGGTGAAAGTGTCTCCGTTCCTTATTCTACTAGCTCTAGATGTTATGGACAGTACGACAACCGGCCAAATGCTGATACAGGAAGAAATCTGAAGTCTATGAGTTTTGTTAGGGGAATTTTAGAGGAAGATGGAAAGGATTTTATGGGTAGTTCTCAGTTCCCTGGACCACCCAATATGGAACACAATGCTGATATTGTTCATTTAAAGATGTTGCGTAACAATATATTTATCACTGTCACGGATAACAAGGGAAATACAAAGCTCAAGGCCTCAGCTGGTCGTCTTGAAGAACTGAAAGGAGGGGCTAGAATGTCCCGTTTTGCTGCTAACACAGTTGCAGAGTATGTTGGTCGTGAATCTCGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTGAAAGGCTTTGCTTTTTTTAAGAGGAAAAGGCAAACGATCATGAGTTGGAGAGATGGATTTACTGATTCTAGAAGTGATCAAAATCCGATTGTCTACGTTGAAGATACTACAAGACGTGCTCACAATGGTTGCCGACTCCGAAAGCAACGCCGAACCTAG

Protein sequence

MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSFHRSDLTGSVQLEKQVSGCLDLSQGDSANVGREIVGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQYDNRPNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFITVTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFFKRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRRT

Homology

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BLAST of Lsi03G009440 vs. ExPASy Swiss-Prot
Match: Q8VZT8 (Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD3 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.4e-46
Identity = 91/185 (49.19%), Postives = 132/185 (71.35%), Query Frame = 0


Query: 100 GESVSVPYSTSSRCYGQYDN--RPNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPN 159
           G   S P  +S   + Q  +  + N+ +G     + FVR ++E++G+   G       PN
Sbjct: 129 GSGFSAPSLSSYENFTQSSSLLKENSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPN 188

Query: 160 MEHNADIVHLKMLRNNIFITVTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGR 219
           +E NADI+H+KMLRNN F+TVTD+KGN K KA++G L +LKGG +M+ + A+  AE +GR
Sbjct: 189 LETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGR 248

Query: 220 ESRKLGLKSVVMRVKGFAFFKRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRL 279
            ++ +GLKSVV++V GF  F +K++ I+++RDGFT+SRSDQNPIVY+EDTTR+AHNGCRL
Sbjct: 249 RAKAMGLKSVVVKVNGFTHFGKKKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRL 308

Query: 280 RKQRR 283
            ++RR
Sbjct: 309 PRKRR 313

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BLAST of Lsi03G009440 vs. ExPASy Swiss-Prot
Match: A5D5E6 (30S ribosomal protein S11 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) OX=370438 GN=rpsK PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-07
Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 164 IVHLKMLRNNIFITVTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLG 223
           + H+K   NN  +T+TD KGNT   +SAG++   KG  + + FAA   AE   RE+ + G
Sbjct: 20  VAHIKSTFNNTIVTITDTKGNTISWSSAGQV-GFKGSRKSTPFAAQMAAESAAREAMEHG 79

Query: 224 LKSVVMRVKGFAFFKRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           LK V + VKG      +   I S +    +       +  ++D T   HNGCR  K+RR
Sbjct: 80  LKEVEVMVKGPG--AGREAAIRSLQAAGLE-------VNLIKDVTPIPHNGCRPPKRRR 128

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BLAST of Lsi03G009440 vs. ExPASy Swiss-Prot
Match: B3QYE8 (30S ribosomal protein S11 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) OX=517418 GN=rpsK PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-07
Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 164 IVHLKMLRNNIFITVTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLG 223
           IVH+K   NNI +T+TD  GNT   ++AG+    KG  + + +A+   AE   +E+  LG
Sbjct: 19  IVHIKATFNNIAVTITDVTGNTVSWSTAGK-NGFKGSKKNTPYASQVTAESAAKEAYDLG 78

Query: 224 LKSVVMRVKGFAFFKRKRQTIMSWRDGFTDSRSDQN---PIVYVEDTTRRAHNGCRLRKQ 283
           ++ V +R+KG            S RD     RS QN    +  + D T   HNGCR  K+
Sbjct: 79  MRKVDVRIKGPG----------SGRDAAI--RSLQNAGLEVKTISDITPLPHNGCRPPKR 127

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BLAST of Lsi03G009440 vs. ExPASy Swiss-Prot
Match: P46746 (Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS11 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-07
Identity = 36/125 (28.80%), Postives = 64/125 (51.20%), Query Frame = 0


Query: 158 MEHNADIVHLKMLRNNIFITVTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGR 217
           +E  + IVH++   NN  IT+TD +GNT+   SAG L   K   + + +A+   AE +  
Sbjct: 13  IEKKSGIVHIQSTTNNTLITLTDLEGNTQFFVSAGTL-GFKNSRKSTVYASGAAAEALAS 72

Query: 218 ESRKLGLKSVVMRVKGFAFFKRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRL 277
           ++   G +++++++KG  + K         +      +     I  +++ T  AHNGCR 
Sbjct: 73  KAFNEGYRTIIVKIKGLGYGK---------KSAIRGLQKSNLVIKQIQEVTPIAHNGCRP 127

Query: 278 RKQRR 283
            K+RR
Sbjct: 133 PKKRR 127

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BLAST of Lsi03G009440 vs. ExPASy Swiss-Prot
Match: Q4G348 (30S ribosomal protein S11, chloroplastic OS=Emiliania huxleyi OX=2903 GN=rps11 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.2e-07
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 161 NADIVHLKMLRNNIFITVTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESR 220
           NA IVH+K   NN  + +TD +GNT   ASAG     KG  + + FAA + AE VG  + 
Sbjct: 18  NAGIVHIKSTFNNTIVNITDKQGNTLFWASAGGC-GFKGAKKSTPFAAQSAAEKVGSMAV 77

Query: 221 KLGLKSVVMRVKGFAFFKRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQ 280
           + G+K   + + G       R+T           +S    ++ ++D T   HNGCR  K+
Sbjct: 78  EQGMKQAEVIISGPG---NGRET------AIRALQSCGLEVLLIKDITPVPHNGCRPPKK 129

Query: 281 RR 283
           RR
Sbjct: 138 RR 129

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BLAST of Lsi03G009440 vs. ExPASy TrEMBL
Match: A0A6J1KGF8 (probable ribosomal protein S11, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111493991 PE=3 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 1.0e-122
Identity = 227/285 (79.65%), Postives = 251/285 (88.07%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRS---SMSSFHRSDLTGSVQL 60
           M +L L HLSSLFRSSSL HG SFS SR+SISPF G+D RS   S+ S H SDL+GSVQL
Sbjct: 1   MRRLPLPHLSSLFRSSSLSHGSSFSSSRVSISPFFGTDGRSPMFSLHSSHGSDLSGSVQL 60

Query: 61  EKQVSGCLDLSQGDSANVGREIVGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQY 120
           ++Q SGC+DL +GDS NVGREIVGRAWKALGAQG CWGLARS E+VSVPYS+SSRCY  Y
Sbjct: 61  DRQDSGCVDLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120

Query: 121 DNRPNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFIT 180
           D  PNADTGRN KSM+FVRGILEEDG +FMGSSQFP PPNMEHNADIVH+K++RNN FIT
Sbjct: 121 DGPPNADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFIT 180

Query: 181 VTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFF 240
           VTDNKGNTKLKASAGRLEELKGG ++SR+AA   AEYVGRESRKLGLKSVVMRVKGF +F
Sbjct: 181 VTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYF 240

Query: 241 KRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           K+K+Q I+SWRDGFTDSRSDQNPIVY+EDTTRRAHNGCRL KQRR
Sbjct: 241 KKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRR 285

[Close]

BLAST of Lsi03G009440 vs. ExPASy TrEMBL
Match: A0A6J1FTT5 (probable ribosomal protein S11, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111447246 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 8.7e-122
Identity = 223/285 (78.25%), Postives = 251/285 (88.07%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSF---HRSDLTGSVQL 60
           M +L   HLSSLFRSSSL HG SFS SRLSISPF G+D+RS MSS    H S+++GSVQL
Sbjct: 1   MRRLPFPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSHGSEISGSVQL 60

Query: 61  EKQVSGCLDLSQGDSANVGREIVGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQY 120
           ++Q SGC++L +GDS NVGREIVGRAWKALGAQG CWGLARS E+VSVPYS+SSRCY  Y
Sbjct: 61  DRQDSGCVNLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120

Query: 121 DNRPNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFIT 180
           D RPNADTGRN KSM+FVRGILEEDG DFMGSSQFP PPNMEHNADIVH+K++RNN FIT
Sbjct: 121 DGRPNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFIT 180

Query: 181 VTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFF 240
           VTDNKGNTKLKAS+GRLEELKGG ++SR+AA   AEYVGRES+KLGLKSVVMRVKGF +F
Sbjct: 181 VTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYF 240

Query: 241 KRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           K+K+Q I+SWRDGFTDS+ DQNPIVY+EDTTRRAHNGCRL KQRR
Sbjct: 241 KKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRR 285

[Close]

BLAST of Lsi03G009440 vs. ExPASy TrEMBL
Match: A0A6J1CJJ5 (probable ribosomal protein S11, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111011744 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 5.6e-113
Identity = 219/285 (76.84%), Postives = 242/285 (84.91%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSF--HRSDLTGSVQLE 60
           M +L LSHLSSLFRSSSL HG S SP R SIS F GSD+RS M+S   HRSDLTGSVQL+
Sbjct: 1   MRRLQLSHLSSLFRSSSLSHGSSSSPFRPSISSFTGSDARSPMASLHPHRSDLTGSVQLD 60

Query: 61  KQVSGCLDLSQGDSANVGREI-VGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQY 120
            QVSGCLDL QGDS +VGR+I VGRAWKALG  G      RS E+VSVPY+ +S+CY  Y
Sbjct: 61  NQVSGCLDLPQGDSMDVGRQIKVGRAWKALGVMG------RSRENVSVPYAVNSKCYVHY 120

Query: 121 DNRPNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFIT 180
           D+R NADTGRN KSM+FVRGILEEDG+DFM  S FP PPNME NADIVH+K++RNN FIT
Sbjct: 121 DSRINADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFIT 180

Query: 181 VTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFF 240
           VTDNKGNTKLKASAGRLEELKGG ++SR+AA  +AEYVGRESRKLGLKSVVMRVKGF +F
Sbjct: 181 VTDNKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYF 240

Query: 241 KRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           K+KRQ IMSWRDGFTDSRSDQNPIVY+EDTTRRAHNGCRL KQRR
Sbjct: 241 KKKRQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRR 279

[Close]

BLAST of Lsi03G009440 vs. ExPASy TrEMBL
Match: A0A0A0KVQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G107470 PE=3 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.8e-112
Identity = 216/283 (76.33%), Postives = 242/283 (85.51%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSFHRSDLTGSVQLEKQ 60
           MPKLSLSHLSSLFRSSSL   PSFSPSRLSISPFIGSD+ S MSS HRSDLTGS+Q   Q
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60

Query: 61  VSGCLDLSQGDSANVGREIVGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQYDNR 120
            SGCL     DSANVGREIVGR WK++G QG   GLAR  E VS+PYS SSRCYG+YDNR
Sbjct: 61  FSGCL----RDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNR 120

Query: 121 PN-ADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFITVT 180
           PN  DTGRNLK M+FVRGILEE+ + F G+ QF  P NMEHNADIVH+K++RNN F+TVT
Sbjct: 121 PNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVT 180

Query: 181 DNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFFKR 240
           DNKGNTKLKASAGRLE   GGA++SR++A+++AEYVGRESRKLGLKSVVMRVKGF FFK+
Sbjct: 181 DNKGNTKLKASAGRLE---GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKK 240

Query: 241 KRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           K+Q I+SWRDGFTDSR+DQNPIVYVEDTTRRAHNGCRL K+RR
Sbjct: 241 KKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRR 276

[Close]

BLAST of Lsi03G009440 vs. ExPASy TrEMBL
Match: A0A5A7TPI6 (Putative ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00350 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 7.9e-107
Identity = 210/284 (73.94%), Postives = 235/284 (82.75%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSFHRSDLTGSVQLEKQ 60
           MPKLSLSHLS LFRSSSL   PSFSPSRLSISPFIGSD+ S  SS   S LTGS+Q    
Sbjct: 1   MPKLSLSHLSPLFRSSSLSRSPSFSPSRLSISPFIGSDAPSRFSSPLPSHLTGSLQPHNH 60

Query: 61  VSGCLDLSQGDSANVGREIVGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQYDNR 120
            SG          +VGREIVGR WKA+G QG  WGLARS ESVSVPYS SSRCYG+YDNR
Sbjct: 61  FSG----------SVGREIVGRGWKAMGVQGPSWGLARSTESVSVPYSISSRCYGEYDNR 120

Query: 121 PN-ADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFITVT 180
           PN  DTGRNLK+++FVRGILEED K F    Q+  P NMEHNADIVH+K++RNN F+TVT
Sbjct: 121 PNPPDTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHIKLMRNNAFVTVT 180

Query: 181 DNKGNTKLKASAGRLEELK-GGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFFK 240
           DNKGNTKLKASAGRLEELK GGA++SR++ +++AEYVGRESRKLGLKSVVMRVKGF FFK
Sbjct: 181 DNKGNTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKSVVMRVKGFTFFK 240

Query: 241 RKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           +K+Q I+SWRDGFTDSRSDQNPIVY+EDTTRRAHNGCRL K+RR
Sbjct: 241 KKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRR 274

[Close]

BLAST of Lsi03G009440 vs. NCBI nr
Match: XP_038903066.1 (probable ribosomal protein S11, mitochondrial [Benincasa hispida])

HSP 1 Score: 467.2 bits (1201), Expect = 9.8e-128
Identity = 238/282 (84.40%), Postives = 253/282 (89.72%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSFHRSDLTGSVQLEKQ 60
           MPKLSLSHL SLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSS HRSDLTGS++L+ Q
Sbjct: 1   MPKLSLSHLYSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSIHRSDLTGSIRLDNQ 60

Query: 61  VSGCLDLSQGDSANVGREIVGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQYDNR 120
           +SGCLDLSQGDSANVGREIVGR WK+ GAQGSCW L RS E VSV +STS RCYGQYDNR
Sbjct: 61  LSGCLDLSQGDSANVGREIVGRGWKSTGAQGSCWSLGRSSECVSVSHSTSYRCYGQYDNR 120

Query: 121 PNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFITVTD 180
           PNADTGRNL SMSFVR  LEE G+ F GSS+F   PNMEHNADIVH+K+LRNN FITVTD
Sbjct: 121 PNADTGRNLNSMSFVRDTLEEGGRYFTGSSRFFRQPNMEHNADIVHVKLLRNNTFITVTD 180

Query: 181 NKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFFKRK 240
           NKGNTKLKASAGRLEELKGG ++SR+AA  VAEYVGRESRKLGLKSVVMRVKGF  FKRK
Sbjct: 181 NKGNTKLKASAGRLEELKGGPKLSRYAAEAVAEYVGRESRKLGLKSVVMRVKGFTIFKRK 240

Query: 241 RQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           RQ I+SWR GFTDSRSDQNPIVY+EDTTRRAHNGCRL KQRR
Sbjct: 241 RQAIISWRAGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRR 282

[Close]

BLAST of Lsi03G009440 vs. NCBI nr
Match: XP_022999735.1 (probable ribosomal protein S11, mitochondrial [Cucurbita maxima])

HSP 1 Score: 449.5 bits (1155), Expect = 2.1e-122
Identity = 227/285 (79.65%), Postives = 251/285 (88.07%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRS---SMSSFHRSDLTGSVQL 60
           M +L L HLSSLFRSSSL HG SFS SR+SISPF G+D RS   S+ S H SDL+GSVQL
Sbjct: 1   MRRLPLPHLSSLFRSSSLSHGSSFSSSRVSISPFFGTDGRSPMFSLHSSHGSDLSGSVQL 60

Query: 61  EKQVSGCLDLSQGDSANVGREIVGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQY 120
           ++Q SGC+DL +GDS NVGREIVGRAWKALGAQG CWGLARS E+VSVPYS+SSRCY  Y
Sbjct: 61  DRQDSGCVDLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120

Query: 121 DNRPNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFIT 180
           D  PNADTGRN KSM+FVRGILEEDG +FMGSSQFP PPNMEHNADIVH+K++RNN FIT
Sbjct: 121 DGPPNADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFIT 180

Query: 181 VTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFF 240
           VTDNKGNTKLKASAGRLEELKGG ++SR+AA   AEYVGRESRKLGLKSVVMRVKGF +F
Sbjct: 181 VTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYF 240

Query: 241 KRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           K+K+Q I+SWRDGFTDSRSDQNPIVY+EDTTRRAHNGCRL KQRR
Sbjct: 241 KKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRR 285

[Close]

BLAST of Lsi03G009440 vs. NCBI nr
Match: XP_022942058.1 (probable ribosomal protein S11, mitochondrial [Cucurbita moschata])

HSP 1 Score: 446.4 bits (1147), Expect = 1.8e-121
Identity = 223/285 (78.25%), Postives = 251/285 (88.07%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSF---HRSDLTGSVQL 60
           M +L   HLSSLFRSSSL HG SFS SRLSISPF G+D+RS MSS    H S+++GSVQL
Sbjct: 1   MRRLPFPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSHGSEISGSVQL 60

Query: 61  EKQVSGCLDLSQGDSANVGREIVGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQY 120
           ++Q SGC++L +GDS NVGREIVGRAWKALGAQG CWGLARS E+VSVPYS+SSRCY  Y
Sbjct: 61  DRQDSGCVNLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120

Query: 121 DNRPNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFIT 180
           D RPNADTGRN KSM+FVRGILEEDG DFMGSSQFP PPNMEHNADIVH+K++RNN FIT
Sbjct: 121 DGRPNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFIT 180

Query: 181 VTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFF 240
           VTDNKGNTKLKAS+GRLEELKGG ++SR+AA   AEYVGRES+KLGLKSVVMRVKGF +F
Sbjct: 181 VTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYF 240

Query: 241 KRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           K+K+Q I+SWRDGFTDS+ DQNPIVY+EDTTRRAHNGCRL KQRR
Sbjct: 241 KKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRR 285

[Close]

BLAST of Lsi03G009440 vs. NCBI nr
Match: KAG7030891.1 (putative ribosomal protein S11, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446.4 bits (1147), Expect = 1.8e-121
Identity = 223/285 (78.25%), Postives = 250/285 (87.72%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSF---HRSDLTGSVQL 60
           M +L   HLSSLFRSSSL HG SFS  RLSISPF G+D+RS MSS    H S+++GSVQL
Sbjct: 1   MRRLPFPHLSSLFRSSSLSHGSSFSSCRLSISPFFGTDARSPMSSLHFSHGSEISGSVQL 60

Query: 61  EKQVSGCLDLSQGDSANVGREIVGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQY 120
           ++Q SGC+DL +GDS NVGREIVGRAWKALGAQG CWGLARS E+VSVPYS+SSRCY  Y
Sbjct: 61  DRQDSGCVDLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120

Query: 121 DNRPNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFIT 180
           D RPNADTGRN KSM+FVRGILEEDG DFMGSSQFP PPNMEHNADIVH+K++RNN FIT
Sbjct: 121 DGRPNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFIT 180

Query: 181 VTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFF 240
           VTDNKGNTKLKAS+GRLEELKGG ++SR+AA   AEYVGRES+KLGLKSVVMRVKGF +F
Sbjct: 181 VTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYF 240

Query: 241 KRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           K+K+Q I+SWRDGFTDS+ DQNPIVY+EDTTRRAHNGCRL KQRR
Sbjct: 241 KKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRR 285

[Close]

BLAST of Lsi03G009440 vs. NCBI nr
Match: XP_023526167.1 (probable ribosomal protein S11, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.5 bits (1129), Expect = 2.2e-119
Identity = 221/285 (77.54%), Postives = 249/285 (87.37%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSFH---RSDLTGSVQL 60
           M +L L HLSSLFRSSSL HG SFS SRLSISPF G+D+RS MSS H    S+++GSVQ+
Sbjct: 1   MRRLPLPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSRGSEISGSVQI 60

Query: 61  EKQVSGCLDLSQGDSANVGREIVGRAWKALGAQGSCWGLARSGESVSVPYSTSSRCYGQY 120
           ++Q SGC+DL +GDS NVGREIVGRA K LGAQG CWGLARS E+VSVPYS+SSRCY  Y
Sbjct: 61  DRQDSGCVDLPRGDSVNVGREIVGRAGKGLGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120

Query: 121 DNRPNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPNMEHNADIVHLKMLRNNIFIT 180
           D RPNADTGRN KSM+FVRGILEED  DFMGSSQFP PPNMEHNADIVH+K++RNN FIT
Sbjct: 121 DGRPNADTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFIT 180

Query: 181 VTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLGLKSVVMRVKGFAFF 240
           VTDNKGNTKLKAS+GRLEELKGG ++SR+AA   AEYVGRES+KLGLKSVVMRVKGF +F
Sbjct: 181 VTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYF 240

Query: 241 KRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           K+K+Q I+SWRDGFTDS+ DQNPIVY+EDTTRRAHNGCRL KQRR
Sbjct: 241 KKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRR 285

[Close]

BLAST of Lsi03G009440 vs. TAIR 10
Match: AT1G31817.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 186.4 bits (472), Expect = 3.1e-47
Identity = 91/185 (49.19%), Postives = 132/185 (71.35%), Query Frame = 0


Query: 100 GESVSVPYSTSSRCYGQYDN--RPNADTGRNLKSMSFVRGILEEDGKDFMGSSQFPGPPN 159
           G   S P  +S   + Q  +  + N+ +G     + FVR ++E++G+   G       PN
Sbjct: 129 GSGFSAPSLSSYENFTQSSSLLKENSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPN 188

Query: 160 MEHNADIVHLKMLRNNIFITVTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGR 219
           +E NADI+H+KMLRNN F+TVTD+KGN K KA++G L +LKGG +M+ + A+  AE +GR
Sbjct: 189 LETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGR 248

Query: 220 ESRKLGLKSVVMRVKGFAFFKRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRL 279
            ++ +GLKSVV++V GF  F +K++ I+++RDGFT+SRSDQNPIVY+EDTTR+AHNGCRL
Sbjct: 249 RAKAMGLKSVVVKVNGFTHFGKKKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRL 308

Query: 280 RKQRR 283
            ++RR
Sbjct: 309 PRKRR 313

[Close]

BLAST of Lsi03G009440 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 42.4 bits (98), Expect = 7.3e-04
Identity = 36/119 (30.25%), Postives = 54/119 (45.38%), Query Frame = 0


Query: 164 IVHLKMLRNNIFITVTDNKGNTKLKASAGRLEELKGGARMSRFAANTVAEYVGRESRKLG 223
           ++H++   NN  +TVTD +G     +SAG     +G  R + FAA T A    R     G
Sbjct: 29  VIHVQASFNNTIVTVTDVRGRVISWSSAGTC-GFRGTRRGTPFAAQTAAGNAIRAVVDQG 88

Query: 224 LKSVVMRVKGFAFFKRKRQTIMSWRDGFTDSRSDQNPIVYVEDTTRRAHNGCRLRKQRR 283
           ++   +R+KG    +      +  R G          + +V D T   HNGCR  K+RR
Sbjct: 89  MQRAEVRIKGPGLGRDAALRAIR-RSGIL--------LSFVRDVTPMPHNGCRPPKKRR 137

The following BLAST results are available for this feature:

BLAST of Lsi03G009440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT8	4.4e-46	49.19	Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana OX=3702 GN...	[more]
A5D5E6	1.1e-07	35.29	30S ribosomal protein S11 OS=Pelotomaculum thermopropionicum (strain DSM 13744 /...	[more]
B3QYE8	1.4e-07	36.07	30S ribosomal protein S11 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-7...	[more]
P46746	1.4e-07	28.80	Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS11 ...	[more]
Q4G348	5.2e-07	34.43	30S ribosomal protein S11, chloroplastic OS=Emiliania huxleyi OX=2903 GN=rps11 P...	[more]

BLAST of Lsi03G009440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGF8	1.0e-122	79.65	probable ribosomal protein S11, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FTT5	8.7e-122	78.25	probable ribosomal protein S11, mitochondrial OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1CJJ5	5.6e-113	76.84	probable ribosomal protein S11, mitochondrial OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0KVQ8	2.8e-112	76.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G107470 PE=3 SV=1	[more]
A0A5A7TPI6	7.9e-107	73.94	Putative ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Lsi03G009440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903066.1	9.8e-128	84.40	probable ribosomal protein S11, mitochondrial [Benincasa hispida]	[more]
XP_022999735.1	2.1e-122	79.65	probable ribosomal protein S11, mitochondrial [Cucurbita maxima]	[more]
XP_022942058.1	1.8e-121	78.25	probable ribosomal protein S11, mitochondrial [Cucurbita moschata]	[more]
KAG7030891.1	1.8e-121	78.25	putative ribosomal protein S11, mitochondrial [Cucurbita argyrosperma subsp. arg...	[more]
XP_023526167.1	2.2e-119	77.54	probable ribosomal protein S11, mitochondrial [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi03G009440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31817.1	3.1e-47	49.19	Ribosomal L18p/L5e family protein	[more]
ATCG00750.1	7.3e-04	30.25	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 164..282 e-value: 1.4E-10 score: 41.5
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 84..282
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 127..283 score: 14.674404
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 156..283 e-value: 2.1E-30 score: 107.6
None	No IPR available	PANTHER	PTHR11759:SF34	RIBOSOMAL PROTEIN S11, MITOCHONDRIAL-RELATED	coord: 84..282
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 162..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G009440.1	Lsi03G009440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0048027	mRNA 5'-UTR binding
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome