Lsi03G004520 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G004520
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr03: 5113951 .. 5116103 (-)
RNA-Seq ExpressionLsi03G004520
SyntenyLsi03G004520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTAGGTTTTCGATTCTGTTTGAATGTTCGTACGTGTTACTACTTGTTTCCTTGTTTTACGAGTTTGATTGTTTACTTTTACGATTTCGCGGTTGCTTGGACTGTATTGCGAGTAGATCTAACTGAGTAGGTTGTTTTTTTTTGTGTTCTCTCGGTTTGCAGATTCTTTGGTCCGTACAACAATGGAGACCGAAACTTCTTCTGTTCATCAGCGCTTGCTGCTAACGTGCGCCGGAGGCATTTCGGCGACGTTGCTTAGCCTCGTGGCCCTGGCCGAGGTGCTTGCTTCGTCTCAGGTGAAGTTACCGCTCTTTTCTTCTTCTCAATTCGTTATTGATCGTGTTTGGTATGTTGATTCTGTTTTCGATTAATTTTTATTTTTTTTTTTTTGTTTGTGAACTTTTGGAATTTATTATTACAAAACGAAAGTGATTTTAAATCAGAATAATTCGCTGTGGATTATATTAATTAGGTTTAAATTTTATCTGTCTAGTTTATTCTATTTTTATTTTTGAGCTTTTAAAATGTATATTTTAGTTTTTAAATTCTTGTTTTATTTAACTAATTTAGTGTATATTTTAGTTTATGTGTTTTCTTCTAAATATATAAAGTAGGGGATCCAATTTTTGCCTTCTATATCGATAATACAAGTTTTATACCATATGCTCATTTTTTTTAGTACATACCATATGCTTATTTTGACAAATAAAAAAACTATTTCAAGCATAATAACGACAAGCGTATAAGTTTAATAATCAATTGCTTTTAAGAATATATATTTACACGTTAATACAAGCATCATTTCAAGTTAAATAAGTTAAAAGGTAAACACTAGTCAAAGTCATGATTATTTTTTTAGAAATTTAAAAAATCAAATAGACACTAGAAGTTTATAAACTAAATAGAACAAATCTAAAAGTGAACCTTTTTTAAAAGTTAAATAAGAAAAATATAAGAAGATAAAAACTTAGGTAGGGTTGCATCTATATGTGCAACTTAGACAATCTAATAAAAAATTATCACGTGGCAAATATTTTTTAAAATAATATTTATTTTTATTTTTTTGTTTGTGTATAAAAGAAATGAGAAGCCTAAATTAGGTGCAATTTAATCATTGTTGGTATAAAAAACGTAAAAGTTAAAAGGTCAATAATTAGGTATAGTCAAGCTCCATACATCTCATTCATTTATCACATGGCAAAAAAAAGTAATAATTTAACTTCTTTTAAAAAGTCAATTTTTCTTACCACATGGAAGTTTTTAATTAGACAACTAATAGTAGGAGTGTACATCGGTCGACCGGTGTTGGTTTTGGATGAAAACTGGCACCAAAAACCGACCCAAAAAACTGGTTTAAATTCGACCGTCAATCGATCGGATAGTCGGTCGGTTTTGTCGTTTTTTTTACCTCATATATTTAGAACTTCATTCTTCATGGCTTGTGGATAAATAACTTCATTATTTATGGACTTATAGATATGAGAGAAGAATGAGATGAAGGAAGGAGGGAAAATTAATTAATTAATTAAAAATAAAAATAAAAAAGGGGGAAAAACCTATTACATACTATGGTTAGTTGGTCGGAGTTGTCAGTTTTTGGTAGAAAAAAATTGACCACCAACCGATGAAGGAACTTCTCCGACCAATCATGGTTGATTCGGTTAGTTTCAGCCTGTCGAATCGGTTTTCAGTGCCTTTATGTACACCCTTAATTAATAGGCTACACAAAATAAGCCTAGAAAGTACATAACAATTTTCTAAAAGTTAAAATATTAAAATGAAATATAAAGCTTATTTTAATTATTTTAATGCAAATGATTAGACACTGAAATGGTTCTTACCATTGGAAAAGAATAAATCATATTTTGTCTTTATTTAAACTCAATTTGCTCATGAAAGATGAGATTCCCGAGGTTTGTTGTCCTCTGATGTTTAGACCTATTATTTTCCATTTTTTTAATCTCTTTTTCAAACGTTTTTTTTTATTTCATTCTAAACGCGGAAACTTTTAGAAAGATATATGATTTACTTTTGGCTTATTCGATAATTTTCTCCAATTTGTGTCATTTCTCAAATTTGTGTCCTCTTGCTGTTTGAAATATTCAATAATTTTTGTCGTCTTGTTGATTTATTTAAATGAGTCCTTAC

mRNA sequence

ATGATTCTAGATTCTTTGGTCCGTACAACAATGGAGACCGAAACTTCTTCTGTTCATCAGCGCTTGCTGCTAACGTGCGCCGGAGGCATTTCGGCGACGTTGCTTAGCCTCGTGGCCCTGGCCGAGGTGCTTGCTTCGTCTCAGGTGAAGTTACCGCTCTTTTCTTCTTCTCAATTCGTTATTGATCGTGTTTGGTATGTTGATTCTGTTTTCGATTAATTTTTATTTTTTTTTTTTTGTTTGTGAACTTTTGGAATTTATTATTACAAAACGAAAGTGATTTTAAATCAGAATAATTCGCTGTGGATTATATTAATTAGGTTTAAATTTTATCTGTCTAGTTTATTCTATTTTTATTTTTGAGCTTTTAAAATGTATATTTTAGTTTTTAAATTCTTGTTTTATTTAACTAATTTAGTGTATATTTTAGTTTATGTGTTTTCTTCTAAATATATAAAGTAGGGGATCCAATTTTTGCCTTCTATATCGATAATACAAGTTTTATACCATATGCTCATTTTTTTTAGTACATACCATATGCTTATTTTGACAAATAAAAAAACTATTTCAAGCATAATAACGACAAGCGTATAAGTTTAATAATCAATTGCTTTTAAGAATATATATTTACACGTTAATACAAGCATCATTTCAAGTTAAATAAGTTAAAAGGTAAACACTAGTCAAAGTCATGATTATTTTTTTAGAAATTTAAAAAATCAAATAGACACTAGAAGTTTATAAACTAAATAGAACAAATCTAAAAGTGAACCTTTTTTAAAAGTTAAATAAGAAAAATATAAGAAGATAAAAACTTAGGTAGGGTTGCATCTATATGTGCAACTTAGACAATCTAATAAAAAATTATCACGTGGCAAATATTTTTTAAAATAATATTTATTTTTATTTTTTTGTTTGTGTATAAAAGAAATGAGAAGCCTAAATTAGGTGCAATTTAATCATTGTTGGTATAAAAAACGTAAAAGTTAAAAGGTCAATAATTAGGTATAGTCAAGCTCCATACATCTCATTCATTTATCACATGGCAAAAAAAAGTAATAATTTAACTTCTTTTAAAAAGTCAATTTTTCTTACCACATGGAAGTTTTTAATTAGACAACTAATAGTAGGAGTGTACATCGGTCGACCGGTGTTGGTTTTGGATGAAAACTGGCACCAAAAACCGACCCAAAAAACTGGTTTAAATTCGACCGTCAATCGATCGGATAGTCGGTCGGTTTTGTCGTTTTTTTTACCTCATATATTTAGAACTTCATTCTTCATGGCTTGTGGATAAATAACTTCATTATTTATGGACTTATAGATATGAGAGAAGAATGAGATGAAGGAAGGAGGGAAAATTAATTAATTAATTAAAAATAAAAATAAAAAAGGGGGAAAAACCTATTACATACTATGGTTAGTTGGTCGGAGTTGTCAGTTTTTGGTAGAAAAAAATTGACCACCAACCGATGAAGGAACTTCTCCGACCAATCATGGTTGATTCGGTTAGTTTCAGCCTGTCGAATCGGTTTTCAGTGCCTTTATGTACACCCTTAATTAATAGGCTACACAAAATAAGCCTAGAAAGTACATAACAATTTTCTAAAAGTTAAAATATTAAAATGAAATATAAAGCTTATTTTAATTATTTTAATGCAAATGATTAGACACTGAAATGGTTCTTACCATTGGAAAAGAATAAATCATATTTTGTCTTTATTTAAACTCAATTTGCTCATGAAAGATGAGATTCCCGAGGTTTGTTGTCCTCTGATGTTTAGACCTATTATTTTCCATTTTTTTAATCTCTTTTTCAAACGTTTTTTTTTATTTCATTCTAAACGCGGAAACTTTTAGAAAGATATATGATTTACTTTTGGCTTATTCGATAATTTTCTCCAATTTGTGTCATTTCTCAAATTTGTGTCCTCTTGCTGTTTGAAATATTCAATAATTTTTGTCGTCTTGTTGATTTATTTAAATGAGTCCTTAC

Coding sequence (CDS)

ATGATTCTAGATTCTTTGGTCCGTACAACAATGGAGACCGAAACTTCTTCTGTTCATCAGCGCTTGCTGCTAACGTGCGCCGGAGGCATTTCGGCGACGTTGCTTAGCCTCGTGGCCCTGGCCGAGGTGCTTGCTTCGTCTCAGGTGAAGTTACCGCTCTTTTCTTCTTCTCAATTCGTTATTGATCGTGTTTGGTATGTTGATTCTGTTTTCGATTAA

Protein sequence

MILDSLVRTTMETETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLPLFSSSQFVIDRVWYVDSVFD
Homology
[Close]
BLAST of Lsi03G004520 vs. ExPASy TrEMBL
Match: A0A6J1JZ42 (uncharacterized protein DDB_G0290685-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489177 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.3e-09
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0 

Query: 1  MILDSLVRTTMETETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLP 53
          MIL SL RTTMET TSSVHQRLLL CAG  SATLL LVA+AE+LASSQ  +P
Sbjct: 1  MILGSLDRTTMETATSSVHQRLLLACAGSTSATLLGLVAMAELLASSQFLVP 52

[Close]
BLAST of Lsi03G004520 vs. ExPASy TrEMBL
Match: A0A6J1FG81 (uncharacterized protein DDB_G0290685-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445132 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1  MILDSLVRTTMETETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLP 53
          MIL SL RTTMET TSS+HQRLLL CAG  SATLL LVA+AE+LASSQ   P
Sbjct: 1  MILGSLDRTTMETATSSIHQRLLLACAGSTSATLLGLVAMAELLASSQFLAP 52

[Close]
BLAST of Lsi03G004520 vs. ExPASy TrEMBL
Match: A0A6J1DGC0 (uncharacterized protein DDB_G0290685-like OS=Momordica charantia OX=3673 GN=LOC111020187 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-06
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 11 METETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQ 49
          METE+SSVH+RLLLTCAGGISA LLSL+A+AE+LASSQ
Sbjct: 1  METESSSVHRRLLLTCAGGISAMLLSLMAMAELLASSQ 38

[Close]
BLAST of Lsi03G004520 vs. ExPASy TrEMBL
Match: A0A6J1JXE9 (uncharacterized protein DDB_G0290685-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489177 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 11 METETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLP 53
          MET TSSVHQRLLL CAG  SATLL LVA+AE+LASSQ  +P
Sbjct: 1  METATSSVHQRLLLACAGSTSATLLGLVAMAELLASSQFLVP 42

[Close]
BLAST of Lsi03G004520 vs. ExPASy TrEMBL
Match: A0A6J1FLT8 (uncharacterized protein DDB_G0290685-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445132 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-05
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 11 METETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLP 53
          MET TSS+HQRLLL CAG  SATLL LVA+AE+LASSQ   P
Sbjct: 1  METATSSIHQRLLLACAGSTSATLLGLVAMAELLASSQFLAP 42

[Close]
BLAST of Lsi03G004520 vs. NCBI nr
Match: XP_023549966.1 (uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-08
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0 

Query: 1  MILDSLVRTTMETETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLP 53
          MIL SL RTTMET TSSVHQRLLL CAG  SATLL LVA+AE+LASSQ  +P
Sbjct: 1  MILGSLDRTTMETATSSVHQRLLLACAGSTSATLLGLVAMAELLASSQFLVP 52

[Close]
BLAST of Lsi03G004520 vs. NCBI nr
Match: XP_022993039.1 (uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-08
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0 

Query: 1  MILDSLVRTTMETETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLP 53
          MIL SL RTTMET TSSVHQRLLL CAG  SATLL LVA+AE+LASSQ  +P
Sbjct: 1  MILGSLDRTTMETATSSVHQRLLLACAGSTSATLLGLVAMAELLASSQFLVP 52

[Close]
BLAST of Lsi03G004520 vs. NCBI nr
Match: XP_022939134.1 (uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 68.2 bits (165), Expect = 3.4e-08
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1  MILDSLVRTTMETETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLP 53
          MIL SL RTTMET TSS+HQRLLL CAG  SATLL LVA+AE+LASSQ   P
Sbjct: 1  MILGSLDRTTMETATSSIHQRLLLACAGSTSATLLGLVAMAELLASSQFLAP 52

[Close]
BLAST of Lsi03G004520 vs. NCBI nr
Match: XP_038885474.1 (uncharacterized protein DDB_G0290685-like isoform X1 [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 45/62 (72.58%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 1  MILDSLVRTTMETETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLPLFSSSQFV 60
          MILDSL RTTMETETSSVHQRLLL CA  ISATLL  VALAE+L SSQ    L S+   V
Sbjct: 2  MILDSLDRTTMETETSSVHQRLLLRCARCISATLLGFVALAELLVSSQF---LDSNKMDV 60

Query: 61 ID 63
          ID
Sbjct: 62 ID 60

[Close]
BLAST of Lsi03G004520 vs. NCBI nr
Match: KAG6578336.1 (hypothetical protein SDJN03_22784, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 6.4e-07
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 5  SLVRTTMETETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLP 53
          SL RTTMET TSS+HQRLLL CAG  SATLL LVA+AE+LASSQ   P
Sbjct: 23 SLDRTTMETATSSIHQRLLLACAGSTSATLLGLVAMAELLASSQFLAP 70

The following BLAST results are available for this feature:
BLAST of Lsi03G004520 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G004520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JZ427.3e-0976.92uncharacterized protein DDB_G0290685-like isoform X1 OS=Cucurbita maxima OX=3661... [more]
A0A6J1FG811.6e-0875.00uncharacterized protein DDB_G0290685-like isoform X1 OS=Cucurbita moschata OX=36... [more]
A0A6J1DGC04.5e-0684.21uncharacterized protein DDB_G0290685-like OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1JXE91.7e-0576.19uncharacterized protein DDB_G0290685-like isoform X2 OS=Cucurbita maxima OX=3661... [more]
A0A6J1FLT83.8e-0573.81uncharacterized protein DDB_G0290685-like isoform X2 OS=Cucurbita moschata OX=36... [more]
BLAST of Lsi03G004520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023549966.11.5e-0876.92uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita pepo subsp. pepo... [more]
XP_022993039.11.5e-0876.92uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita maxima][more]
XP_022939134.13.4e-0875.00uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita moschata][more]
XP_038885474.15.8e-0872.58uncharacterized protein DDB_G0290685-like isoform X1 [Benincasa hispida][more]
KAG6578336.16.4e-0775.00hypothetical protein SDJN03_22784, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lsi03G004520 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004520.1Lsi03G004520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane