Lsi03G002270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G002270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-directed RNA polymerase II subunit 4-like
Location	chr03: 2855785 .. 2857450 (-)
RNA-Seq Expression	Lsi03G002270
Synteny	Lsi03G002270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATTTCGCTCTTTGTGCTCTTTGTTCTAAGGTCCATAAAGAGAAAATATAAGACATGATAACTGACACTTGCTTCCTTTGTCTACCTACAGAGTTCTTAAAAGCCAAGTGTTTAATGAATTGCGAAGTTTCTTTGATCCTTGAACACAAGTATGAGCAGCTTCAACAAAGGGCCGAGGATCCAACAAATCAAGTTTCTCAGTGAGATTTATGTTTATTCTTTATTGATTCATAAGTTAAATTAGAGTTTTTCTTCTTTGTTGGAATAGCTAAAATATATACTTAAATTACGATATTCATTCTCACTTGCCATACAATAACAATGGATTTTTAATTTGGTCTTCTTCTGCAGAGTGTTTGAAAAGTCATTGCAGTATGTGAAACGCTTCAGTCGCTATAAGAACCCTGATGCTGTTAGACAAGTCCGAGAGTATCCTTTAAACTTTAATGTTTTCTATTTTATGGGATGGTGGGAAGGATGAGTTGTGCATATCTACTCTATGCTATAACTAACCCCATTTTGAACTAGATTAGCTTAAAGTTCATTATACCTTTACAGCCATACTATTTTATAGGTTTCCTAGGTATCCATCCGAAAATTATGTACTACTTTGATATTTAATTCATGGAGGGAAATACAATTTACTTTATCACCTAAGTTACAAACATTAAAGTTGGTTTCATTGTTTAAAATCGCATAAAAGTGGTTAAAACTTAACTACTACCATATAGAATTCTAAGCAGATATCAACTAGCTGAGTTTGAGGTATGTATACTGGATCATTTGGTTTAATTAACTTACTTATTATTATTCTATGGGAAGGTTTATCTCCTTTTGAAATTTGCAGCTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTACATCCATAGTTCCATCTTTGAAGGTATCTTTTGTCATTCCTTGTAATGCCTACATTAAAATATTTATTGGTATTTTAATTTTTATCATAAGTAGAGTAGTAACTTTTAAAAAGTTTACTGTGTGTTTTTCTAGTTTACTGTGTGTTTTTCTTTCAACAATGAATATGCATCGAGTTTTAAATTACTACTAAAAAGTTTTAAAACTAAAAATGTAATTTGAAAAAAAAAAAGAAAGACAAAAAAATGAGTCCTTAAACTTATACGAGTGTTAAGATTGAACCCTCTAACTTACGATATTTGTAGAAATTGGACCCCTAAATGATAAAAATTGAACTCGTAAATTTAAATAGTTATAATTTCTACAATTATGTGAGTTTGATGGTCCAATTTTAACAGTTACAGCTTCGAAAAGTAAAAACAATGTTTATAGATAGAGTAGACTTGCTTATAAATACTTTTGTTGTTTTCAGACTAAAGGAAGGGTGCATGACGATGAAGCTATAGAGAAGATGTTGAATGATCTTTCATTAATAAAAAAGTTTGAGTAGTTAGCTTTCTAAATCTTGCTTAAATATTTTTTTTGTTTATTTTTTGTTTTTTTGACATTTTCTCACCTAAAACAATCGATAATTGTACCCTTCTTATCACAGTTTTATAATTGTATGGATAACTTTGTAAATGGGATCCTTACCAAATCTCCAATCTAAATTTAAGCTGTATACTATTTTTTCTTTAAAAAAAATTATTTATTAATAACATAAATGCAACCT

mRNA sequence

TTTTATTTCGCTCTTTGTGCTCTTTGTTCTAAGGTCCATAAAGAGAAAATATAAGACATGATAACTGACACTTGCTTCCTTTGTCTACCTACAGAGTTCTTAAAAGCCAAGTGTTTAATGAATTGCGAAGTTTCTTTGATCCTTGAACACAAGTATGAGCAGCTTCAACAAAGGGCCGAGGATCCAACAAATCAAGTTTCTCAAGTGTTTGAAAAGTCATTGCAGTATGTGAAACGCTTCAGTCGCTATAAGAACCCTGATGCTGTTAGACAAGTCCGAGAGTATCCTTTAAACTTTAATGTTTTCTATTTTATGGGATGGTGGGAAGGATGAGTTGTGCATATCTACTCTATGCTATAACTAACCCCATTTTGAACTAGATTAGCTTAAAGTTCATTATACCTTTACAGCCATACTATTTTATAGGTTTCCTAGGTATCCATCCGAAAATTATGTACTACTTTGATATTTAATTCATGGAGGGAAATACAATTTACTTTATCACCTAAGTTACAAACATTAAAGTTGGTTTCATTGTTTAAAATCGCATAAAAGTGGTTAAAACTTAACTACTACCATATAGAATTCTAAGCAGATATCAACTAGCTGAGTTTGAGCTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTACATCCATAGTTCCATCTTTGAAGACTAAAGGAAGGGTGCATGACGATGAAGCTATAGAGAAGATGTTGAATGATCTTTCATTAATAAAAAAGTTTGAGTAGTTAGCTTTCTAAATCTTGCTTAAATATTTTTTTTGTTTATTTTTTGTTTTTTTGACATTTTCTCACCTAAAACAATCGATAATTGTACCCTTCTTATCACAGTTTTATAATTGTATGGATAACTTTGTAAATGGGATCCTTACCAAATCTCCAATCTAAATTTAAGCTGTATACTATTTTTTCTTTAAAAAAAATTATTTATTAATAACATAAATGCAACCT

Coding sequence (CDS)

ATGATAACTGACACTTGCTTCCTTTGTCTACCTACAGAGTTCTTAAAAGCCAAGTGTTTAATGAATTGCGAAGTTTCTTTGATCCTTGAACACAAGTATGAGCAGCTTCAACAAAGGGCCGAGGATCCAACAAATCAAGTTTCTCAAGTGTTTGAAAAGTCATTGCAGTATGTGAAACGCTTCAGTCGCTATAAGAACCCTGATGCTGTTAGACAAGTCCGAGAGTATCCTTTAAACTTTAATGTTTTCTATTTTATGGGATGGTGGGAAGGATGA

Protein sequence

MITDTCFLCLPTEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLNFNVFYFMGWWEG

Homology

[Close]

BLAST of Lsi03G002270 vs. ExPASy Swiss-Prot
Match: O48890 (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-26
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEVSLILEHK+EQLQQ +EDP NQVSQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VRE 76
          VRE
Sbjct: 77 VRE 79

[Close]

BLAST of Lsi03G002270 vs. ExPASy Swiss-Prot
Match: O15514 (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-07
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 4  DTCFLCLPTEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSR 63
          D   L  P EF  A+ L+N EV ++LEH+ +Q  + AED   ++S+VF K+L Y  RFSR
Sbjct: 16 DASQLIFPKEFETAETLLNSEVHMLLEHRKQQ-NESAED-EQELSEVFMKTLNYTARFSR 75

Query: 64 YKNPDAVRQVREYPLNFNVFYF 86
          +KN + +  VR   L   +  F
Sbjct: 76 FKNRETIASVRSLLLQKKLHKF 95

[Close]

BLAST of Lsi03G002270 vs. ExPASy Swiss-Prot
Match: Q9D7M8 (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-07
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 4  DTCFLCLPTEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSR 63
          D   L  P EF  A+ L+N EV ++LEH+ +Q  + AED   ++S+VF K+L Y  RFSR
Sbjct: 16 DASQLIFPKEFETAETLLNSEVHMLLEHRKQQ-NESAED-EQELSEVFMKTLNYTARFSR 75

Query: 64 YKNPDAVRQVREYPLNFNVFYF 86
          +KN + +  VR   L   +  F
Sbjct: 76 FKNRETIASVRSLLLQKKLHKF 95

[Close]

BLAST of Lsi03G002270 vs. ExPASy Swiss-Prot
Match: Q54S04 (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689 GN=polr2d PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.6e-04
Identity = 26/84 (30.95%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 4  DTCFLCLPTEFLKAKCLMNCEVSLILEHKYEQLQQRAED-------------PTNQVSQV 63
          D   L  P +   AK L+N EV+++LEH+    +    +               N + + 
Sbjct: 16 DLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSINDIIRT 75

Query: 64 FEKSLQYVKRFSRYKNPDAVRQVR 75
          F K+L Y ++FSRYKN  +++QVR
Sbjct: 76 FHKTLAYAEKFSRYKNKTSIKQVR 99

[Close]

BLAST of Lsi03G002270 vs. ExPASy TrEMBL
Match: A0A2P5WMU4 (RPOL4c domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA28255 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEV+LILEHKYEQLQQ ++DP NQVSQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VREYPLNFNVFY 85
          VREYPLNF  FY
Sbjct: 77 VREYPLNFQKFY 88

[Close]

BLAST of Lsi03G002270 vs. ExPASy TrEMBL
Match: A0A5D3BN95 (DNA-directed RNA polymerase II subunit 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001830 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQ+SQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VREYPL 79
          VREY L
Sbjct: 77 VREYQL 82

[Close]

BLAST of Lsi03G002270 vs. ExPASy TrEMBL
Match: V4LB78 (RPOL4c domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10014976mg PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEVSLILEHKYEQLQQ +EDP NQVSQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VREYPL 79
          VREYPL
Sbjct: 77 VREYPL 82

[Close]

BLAST of Lsi03G002270 vs. ExPASy TrEMBL
Match: I3SGD9 (RPOL4c domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEVSLILEHKYEQLQQ ++DP NQVSQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VREYPLN 80
          VREYP N
Sbjct: 77 VREYPAN 83

[Close]

BLAST of Lsi03G002270 vs. ExPASy TrEMBL
Match: A0A1S3CA78 (DNA-directed RNA polymerase II subunit 4-like OS=Cucumis melo OX=3656 GN=LOC103498588 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQ+SQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VRE 76
          VRE
Sbjct: 77 VRE 79

[Close]

BLAST of Lsi03G002270 vs. NCBI nr
Match: PPR92416.1 (hypothetical protein GOBAR_AA28255 [Gossypium barbadense])

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-28
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEV+LILEHKYEQLQQ ++DP NQVSQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VREYPLNFNVFY 85
          VREYPLNF  FY
Sbjct: 77 VREYPLNFQKFY 88

[Close]

BLAST of Lsi03G002270 vs. NCBI nr
Match: TYK00568.1 (DNA-directed RNA polymerase II subunit 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 3.1e-27
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQ+SQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VREYPL 79
          VREY L
Sbjct: 77 VREYQL 82

[Close]

BLAST of Lsi03G002270 vs. NCBI nr
Match: ESQ40929.1 (hypothetical protein EUTSA_v10014976mg [Eutrema salsugineum])

HSP 1 Score: 128.6 bits (322), Expect = 2.7e-26
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEVSLILEHKYEQLQQ +EDP NQVSQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VREYPL 79
          VREYPL
Sbjct: 77 VREYPL 82

[Close]

BLAST of Lsi03G002270 vs. NCBI nr
Match: AFK39331.1 (unknown [Lotus japonicus])

HSP 1 Score: 128.6 bits (322), Expect = 2.7e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEVSLILEHKYEQLQQ ++DP NQVSQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VREYPLN 80
          VREYP N
Sbjct: 77 VREYPAN 83

[Close]

BLAST of Lsi03G002270 vs. NCBI nr
Match: XP_004141497.1 (DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >XP_031742047.1 DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >KAE8648963.1 hypothetical protein Csa_008563 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 3.5e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VRE 76
          VRE
Sbjct: 77 VRE 79

[Close]

BLAST of Lsi03G002270 vs. TAIR 10
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 120.2 bits (300), Expect = 8.8e-28
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 13 EFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 72
          EFLKAKCLMNCEVSLILEHK+EQLQQ +EDP NQVSQVFEKSLQYVKRFSRYKNPDAVRQ
Sbjct: 17 EFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQ 76

Query: 73 VRE 76
          VRE
Sbjct: 77 VRE 79

The following BLAST results are available for this feature:

BLAST of Lsi03G002270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48890	1.2e-26	93.65	DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
O15514	4.9e-07	40.24	DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE...	[more]
Q9D7M8	4.9e-07	40.24	DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d P...	[more]
Q54S04	6.6e-04	30.95	DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689...	[more]

BLAST of Lsi03G002270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5WMU4	1.1e-28	90.28	RPOL4c domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA2825...	[more]
A0A5D3BN95	1.5e-27	96.97	DNA-directed RNA polymerase II subunit 4-like OS=Cucumis melo var. makuwa OX=119...	[more]
V4LB78	1.3e-26	95.45	RPOL4c domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10014...	[more]
I3SGD9	1.3e-26	92.54	RPOL4c domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
A0A1S3CA78	2.2e-26	98.41	DNA-directed RNA polymerase II subunit 4-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Lsi03G002270 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR92416.1	2.2e-28	90.28	hypothetical protein GOBAR_AA28255 [Gossypium barbadense]	[more]
TYK00568.1	3.1e-27	96.97	DNA-directed RNA polymerase II subunit 4-like [Cucumis melo var. makuwa]	[more]
ESQ40929.1	2.7e-26	95.45	hypothetical protein EUTSA_v10014976mg [Eutrema salsugineum]	[more]
AFK39331.1	2.7e-26	92.54	unknown [Lotus japonicus]	[more]
XP_004141497.1	3.5e-26	100.00	DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >XP_031742047.1 DNA-d...	[more]

BLAST of Lsi03G002270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09920.1	8.8e-28	93.65	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 12..84 e-value: 2.2E-4 score: 19.2
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 3..83 e-value: 3.1E-22 score: 80.8
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 19..76 e-value: 1.7E-7 score: 31.6
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 9..76
None	No IPR available	PANTHER	PTHR21297:SF3	DNA-DIRECTED RNA POLYMERASE II SUBUNIT 4-LIKE	coord: 9..76
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 10..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G002270.1	Lsi03G002270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031990	mRNA export from nucleus in response to heat stress
biological_process	GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0034402	recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0031369	translation initiation factor binding