Lsi03G002080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G002080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionstress-induced protein KIN2-like
Locationchr03: 2696489 .. 2696827 (-)
RNA-Seq ExpressionLsi03G002080
SyntenyLsi03G002080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTCATATTACTTTTATTGGTTGTCGTCGGAGAACGTCCCATATTTGGTTTATGTTTGTGTGGTTAAGGGATGATTAAGGTGACATGTTAGTTTGTGTTCTTATGCAGGAAAAGGTGAGCAATATGATGGACAAGACAAGCGATGCAGCCCAATCAGCTAAAGAATCAGTGCAAGAAGCAGGACAACAGGTGAAAGCGAAGGCACAAGGGGCCGCTGATGCTGTCAAGGATGCAATTAACAAATAAAAATGTCTATCGATTTGCTCATTTTTTGAGATTTTTTTTTTCAAAGGTTCTCCTCAATTTTGTTTTTGCTTAGATTTTTTTTTTCTTTTCCC

mRNA sequence

GTTTCATATTACTTTTATTGGTTGTCGTCGGAGAACGTCCCATATTTGGTTTATGAAAAGGTGAGCAATATGATGGACAAGACAAGCGATGCAGCCCAATCAGCTAAAGAATCAGTGCAAGAAGCAGGACAACAGGTGAAAGCGAAGGCACAAGGGGCCGCTGATGCTGTCAAGGATGCAATTAACAAATAAAAATGTCTATCGATTTGCTCATTTTTTGAGATTTTTTTTTTCAAAGGTTCTCCTCAATTTTGTTTTTGCTTAGATTTTTTTTTTCTTTTCCC

Coding sequence (CDS)

GTTTCATATTACTTTTATTGGTTGTCGTCGGAGAACGTCCCATATTTGGTTTATGAAAAGGTGAGCAATATGATGGACAAGACAAGCGATGCAGCCCAATCAGCTAAAGAATCAGTGCAAGAAGCAGGACAACAGGTGAAAGCGAAGGCACAAGGGGCCGCTGATGCTGTCAAGGATGCAATTAACAAATAA

Protein sequence

VSYYFYWLSSENVPYLVYEKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDAINK
Homology
BLAST of Lsi03G002080 vs. ExPASy TrEMBL
Match: A0A0A0KXN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.9e-10
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDAINK 64
          EK+SNMMDK SDAAQSAKESVQE GQQ+ AKAQGAADAVKDA+NK
Sbjct: 21 EKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVKDAVNK 65

BLAST of Lsi03G002080 vs. ExPASy TrEMBL
Match: A0A6J1E4Q8 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          EK SNMMDK SDAAQSAKESVQEAGQQVKAKAQGAADAVKDA
Sbjct: 21 EKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVKDA 62

BLAST of Lsi03G002080 vs. ExPASy TrEMBL
Match: A0A6J1BXT9 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111006690 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-09
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDAINK 64
          EK SN+MDK SD AQSAKESVQEAGQQVKAKAQGA DAVKDA NK
Sbjct: 21 EKASNLMDKASDKAQSAKESVQEAGQQVKAKAQGAIDAVKDAANK 65

BLAST of Lsi03G002080 vs. ExPASy TrEMBL
Match: A0A5D3BPC0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002090 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-09
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDAINK 64
          EKVSNMMDK S+AAQS KESVQEAGQQ+ AKAQGA DAVKDA+NK
Sbjct: 20 EKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQGATDAVKDAVNK 64

BLAST of Lsi03G002080 vs. ExPASy TrEMBL
Match: A0A6J1BXE6 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111006564 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-09
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDAINK 64
          EK SN+MDK  DAAQSAKESVQEAGQQ+KAKAQGA DAVKDA NK
Sbjct: 21 EKASNLMDKVDDAAQSAKESVQEAGQQMKAKAQGAVDAVKDAANK 65

BLAST of Lsi03G002080 vs. NCBI nr
Match: XP_038891080.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 8.3e-11
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDAINK 64
          EKVSNMMDK SDAAQSAKES+QEAGQQVKAKAQGA DAVKDAINK
Sbjct: 20 EKVSNMMDKASDAAQSAKESIQEAGQQVKAKAQGATDAVKDAINK 64

BLAST of Lsi03G002080 vs. NCBI nr
Match: XP_038891063.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 9.2e-10
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDAINK 64
          EKVSNMMDK +DAAQSAKES+QEAGQQVKAK QGAAD VKDAINK
Sbjct: 20 EKVSNMMDKAADAAQSAKESMQEAGQQVKAKVQGAADVVKDAINK 64

BLAST of Lsi03G002080 vs. NCBI nr
Match: XP_038891163.1 (stress-induced protein KIN2-like [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDAINK 64
          EKVSNMMDK +DAAQS KES+QEAGQQ+KAKAQGAA+AVKDA+NK
Sbjct: 20 EKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKDAVNK 64

BLAST of Lsi03G002080 vs. NCBI nr
Match: XP_004141485.1 (late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical protein Csa_008504 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDAINK 64
          EK+SNMMDK SDAAQSAKESVQE GQQ+ AKAQGAADAVKDA+NK
Sbjct: 21 EKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVKDAVNK 65

BLAST of Lsi03G002080 vs. NCBI nr
Match: XP_038891124.1 (late embryogenesis abundant protein 7-like [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 2.7e-09
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDAINK 64
          EK+SNMMDK  DAAQSAKESVQE GQQ+KAK QGAADAVKDAINK
Sbjct: 20 EKLSNMMDKAGDAAQSAKESVQEVGQQMKAKVQGAADAVKDAINK 64

BLAST of Lsi03G002080 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 53.9 bits (128), Expect = 5.4e-08
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          EK S MMDK S+AAQSAKES++E GQQ+K KAQGA ++VK+A
Sbjct: 21 EKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNA 62

BLAST of Lsi03G002080 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 53.9 bits (128), Expect = 5.4e-08
Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKD 60
          EK SN++DK S+AAQSAKES+QE GQQ+K KAQGA++ +K+
Sbjct: 21 EKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKE 61

BLAST of Lsi03G002080 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 4.6e-07
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0

Query: 19 EKVSNMMDKTSDAAQSAKESVQEAGQQVKAKAQGAADAVKD 60
          EK   MMDK  DAA SA++S+Q+ GQQ+K KAQGAAD VKD
Sbjct: 20 EKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKD 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXN29.9e-1086.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1[more]
A0A6J1E4Q82.2e-0995.24stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 ... [more]
A0A6J1BXT93.8e-0986.67stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111006690 ... [more]
A0A5D3BPC04.9e-0984.44Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1BXE64.9e-0984.44stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111006564 ... [more]
Match NameE-valueIdentityDescription
XP_038891080.18.3e-1193.33late embryogenesis abundant protein 2-like [Benincasa hispida][more]
XP_038891063.19.2e-1088.89late embryogenesis abundant protein 2-like [Benincasa hispida][more]
XP_038891163.11.6e-0984.44stress-induced protein KIN2-like [Benincasa hispida][more]
XP_004141485.12.0e-0986.67late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical... [more]
XP_038891124.12.7e-0986.67late embryogenesis abundant protein 7-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT5G38760.15.4e-0869.05Late embryogenesis abundant protein (LEA) family protein [more]
AT5G53820.15.4e-0865.85Late embryogenesis abundant protein (LEA) family protein [more]
AT3G02480.14.6e-0765.85Late embryogenesis abundant protein (LEA) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.120.20Apolipoproteincoord: 10..63
e-value: 4.7E-6
score: 28.6
NoneNo IPR availablePANTHERPTHR34191:SF4LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 18..63
IPR039624Stress-induced protein KIN1/KIN2PANTHERPTHR34191LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 18..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G002080.1Lsi03G002080.1mRNA