Lsi02G030020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G030020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Nuclear pore complex protein NUP35
Location	chr02: 36100867 .. 36103506 (+)
RNA-Seq Expression	Lsi02G030020
Synteny	Lsi02G030020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACTGTGCATAGAACTCCCAATTCTGGGAGGCAGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGGAAATTTTCAACTCCAGGTCAGGCAGCTGCTGTATCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCGGTTTTCACCTTGGAAGACCGCTCGGGCTCAGATTTTTCTCCTGAGTCTGGGATTCCTGATTATCCTGTTTCCCCAGAAATTAAATCAGACCCAAGGACCCCTATCCAAAGTCACGACTTCTCTTCGTCGATGAAAAACAAGTCAAATGCCAGCACTTCATACACACCAATTAGTGGACAACAAAGCCGGCAGGGATCAGCTGGCTTTAGTTGGTGGTCGACATCGAAAGGTGGTGGGAGTGAGCAAGAAGATAAGGGGAAAAGTTCACCAGTTGAAGGTGTGATTCAACCTGGTGCATTAATCACACTTCCAACCCCTAGGGAAGTTGCCAGACCGGAAGTGCAGAGGAATTGCTTGCCTGCAGCAAAACTCAATGAGGAGGAATGGCTTACTGTCTATGGGTGAGTCTCTGTGCCCTTTCGCCCCTCTCATTCATCATCGTTAGCTGAGATTTTTGTTGTGGGTTGAACTTTGAATGATTCATTTACCATCTTAGAGTTGTTATGTCCGATTGATTACAGATTTTTTTTATCTACATGCTAAACAGCCAATCATTTTTCTTTCAAGTCATCTTGGAATTTCCTAAATCACGATGGAGATGATTACATTTGTTTTAGTTGTATATGGTTTATGCATGCAGTCTTGCCTTGCCATTTCTCTTGGATGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACACTCGCACTTCACCCCTAGACATGATAACATGCTCTTGTATTGAGCATCGCTTCATTAATCACTGACATTAAACATCTTCAATTTGGAGGTGTTGTAAGCCTGTCCTTTTACCTTGGCTTCCTTCTTGTTGAAATGAATGAGCATGCTTCAATTTTTTGGCGTGGAAGGAGGTACCCTAGCTGCTTTAGATTTACCTCAGTAGCAGTGCTGTTGGTTTTGATATAAGCAATTAAATTTTTTGTATTTTATATTTGATACGAAGCGATGCTATTATTGATTCCAATGTTCGTTCTTATTTTTATAATTTTGTGCCATCTTTCTTCAGATTCTCCCCGGCTGATACAAATCTTGTTTTGAGGGAATTTGAAAAATGCGGTGAGATCTTGAAACATGTTCCTGGTCCAAGAGATGCTAATTGGATGCACATTCTTTATCAGGTACCATTCTACCTACGTTTACCTGCTCAGTGTTTTAAAAAGCCCTCTTGGGCGTGTGCCTAGGAGCAAGGTGTAGGTCTGGCGCCTCGCCTTGGAAAGATGAGACTAACAAAATAAGGCGCGCCTTAGGCACACGCCTTTTATGAAGCCCCAAGGCTCAAAGCCCTGGACCTTGGGGCTTTTTCATTATTTTTATGAAATAGTATTAATTAAGGGTTTTCCTTCTTTATTAACTAAAAGAATCAAGTTTACTAAGTCTAAACACAAAATTTATTGTGTTTGGGGTCTTTTTTTTTCCCATATTTCCACTTCAACTGTGCTTTCTCTTTTTAATGTAATATTTTTTTATATAGCGCGCCTTATAAAGAAAGCCCGTGCCCTTTTGTGCGCCTAGGCTCCAGAGGTCCATTGTGCCTTGGTGTGCCTTGGGCATTTAAAAACACTGCCTGCTCTATTTGACTATGTTTTTCTCAGTTTGATGTTTTTTTTCTTTTAGACACTTCCAGTCAATCTGTCATTTGAAATCGGAATGGCTTTGTTGTTAGTTGGTAAAATTTGGGGACTTGATAATTATGTATTAATTTTTATGAAAATAATGTGCAACACGTATTGTTGGATGTTAGGGAAGGTATTAGGTTTTAAATCTTTAAGATTATAGTTGTTTTTAGTTGAGCTCTCAAGTTGGCTAATTAGGTTTAAGATTTAATTGACACCTGCTGAGTGTTTTGTTTGAATATTAACCTCATCAAAATATATATGTGTGTGTGTGTAATTTTTATGAAAATAATGTGCAACACGTATTGTTGGATGCTAGGGAAGGTATTAGGTTTTAAATCTTTAAGATTATAGTTGTTTTTAGTTGAGCTCTCAAGTTGGCTAATTAGGTTTAAGATTTAATTGACACCTGCTGAGTATTTTGTTTGAATATTAACCTCATCAAAATGTGTGATGCATATTCAACCTCTTAAAAATACTATTTGCGTTATGAATATGTTGTTTCATTTGTTGCTGGTGCAGAACCGATCTGATGCTCACAGGGCTCTCAACAAAAATGGTATTCAAATTAATGGGGTGCTAATTGTTGGTGTGAAACCAGTGGACCTAATGCACCGGCAGGCACTAGATGAAAAGTTAAACAACCCAGGATTCATGGTTACCCCTCCGGTATCTTCTCGAACCTCAGAACTCCTTGCAATGAGAGGGCCGGCGCGTCCTTACAGTCTTCAAAATGGTAACGGTAGTGCACGGCAGTCAGGAGGTACCATTGCTTCACCATCGAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAA

mRNA sequence

ATGAACACTGTGCATAGAACTCCCAATTCTGGGAGGCAGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGGAAATTTTCAACTCCAGGTCAGGCAGCTGCTGTATCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCGGTTTTCACCTTGGAAGACCGCTCGGGCTCAGATTTTTCTCCTGAGTCTGGGATTCCTGATTATCCTGTTTCCCCAGAAATTAAATCAGACCCAAGGACCCCTATCCAAAGTCACGACTTCTCTTCGTCGATGAAAAACAAGTCAAATGCCAGCACTTCATACACACCAATTAGTGGACAACAAAGCCGGCAGGGATCAGCTGGCTTTAGTTGGTGGTCGACATCGAAAGGTGGTGGGAGTGAGCAAGAAGATAAGGGGAAAAGTTCACCAGTTGAAGGTGTGATTCAACCTGGTGCATTAATCACACTTCCAACCCCTAGGGAAGTTGCCAGACCGGAAGTGCAGAGGAATTGCTTGCCTGCAGCAAAACTCAATGAGGAGGAATGGCTTACTGTCTATGGATTCTCCCCGGCTGATACAAATCTTGTTTTGAGGGAATTTGAAAAATGCGGTGAGATCTTGAAACATAACCGATCTGATGCTCACAGGGCTCTCAACAAAAATGGTATTCAAATTAATGGGGTGCTAATTGTTGGTGTGAAACCAGTGGACCTAATGCACCGGCAGGCACTAGATGAAAAGTTAAACAACCCAGGATTCATGGTTACCCCTCCGGTATCTTCTCGAACCTCAGAACTCCTTGCAATGAGAGGGCCGGCGCGTCCTTACAGTCTTCAAAATGGTAACGGTAGTGCACGGCAGTCAGGAGGTACCATTGCTTCACCATCGAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAA

Coding sequence (CDS)

ATGAACACTGTGCATAGAACTCCCAATTCTGGGAGGCAGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGGAAATTTTCAACTCCAGGTCAGGCAGCTGCTGTATCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCGGTTTTCACCTTGGAAGACCGCTCGGGCTCAGATTTTTCTCCTGAGTCTGGGATTCCTGATTATCCTGTTTCCCCAGAAATTAAATCAGACCCAAGGACCCCTATCCAAAGTCACGACTTCTCTTCGTCGATGAAAAACAAGTCAAATGCCAGCACTTCATACACACCAATTAGTGGACAACAAAGCCGGCAGGGATCAGCTGGCTTTAGTTGGTGGTCGACATCGAAAGGTGGTGGGAGTGAGCAAGAAGATAAGGGGAAAAGTTCACCAGTTGAAGGTGTGATTCAACCTGGTGCATTAATCACACTTCCAACCCCTAGGGAAGTTGCCAGACCGGAAGTGCAGAGGAATTGCTTGCCTGCAGCAAAACTCAATGAGGAGGAATGGCTTACTGTCTATGGATTCTCCCCGGCTGATACAAATCTTGTTTTGAGGGAATTTGAAAAATGCGGTGAGATCTTGAAACATAACCGATCTGATGCTCACAGGGCTCTCAACAAAAATGGTATTCAAATTAATGGGGTGCTAATTGTTGGTGTGAAACCAGTGGACCTAATGCACCGGCAGGCACTAGATGAAAAGTTAAACAACCCAGGATTCATGGTTACCCCTCCGGTATCTTCTCGAACCTCAGAACTCCTTGCAATGAGAGGGCCGGCGCGTCCTTACAGTCTTCAAAATGGTAACGGTAGTGCACGGCAGTCAGGAGGTACCATTGCTTCACCATCGAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAA

Protein sequence

MNTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLREFEKCGEILKHNRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNGSARQSGGTIASPSKSLVSKVMDLMFGV

Homology

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BLAST of Lsi02G030020 vs. ExPASy Swiss-Prot
Match: O04326 (Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 2.5e-106
Identity = 211/329 (64.13%), Postives = 246/329 (74.77%), Query Frame = 0


Query: 5   HRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDR 64
           HRTP SGRQSL +QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++TL+DR
Sbjct: 6   HRTPKSGRQSLLFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMYTLDDR 65

Query: 65  SGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSSMKNKSNASTSYTPISGQQSRQG 124
             SDFSPESGI DY  SP+ KSD RTP QS   +  +  K K  AS S++ ++ QQS+Q 
Sbjct: 66  --SDFSPESGIADYSASPDAKSDRRTPFQSSGKNIVTPGKGKLEASPSFSLLNAQQSQQV 125

Query: 125 SAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKL 184
           S   SWWS SK G S EQ+DKGK SPVEGV+QPGAL+TLP PREVARPEVQR  +P   L
Sbjct: 126 SGSPSWWSQSKAGSSTEQDDKGKGSPVEGVVQPGALVTLPPPREVARPEVQRQIIPTGNL 185

Query: 185 NEEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNG 244
           +EEEW+TVYGFSP DTNLVLREFEKCG +LKH               NRSDAH+ALNK G
Sbjct: 186 DEEEWVTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKALNKAG 245

Query: 245 IQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGN 304
           + INGV+IVGVKPVD + +QAL+E+LNN GFM  PP SS  +     R  +RP  LQNG+
Sbjct: 246 MMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTRN---TARPLSRPQYLQNGS 305

Query: 305 G-SARQSGGTIASPSKSLVSKVMDLMFGV 315
             S + SGG +ASPSKS+VSK  DLMFGV
Sbjct: 306 AFSPQPSGGAMASPSKSMVSKFFDLMFGV 329

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BLAST of Lsi02G030020 vs. ExPASy Swiss-Prot
Match: Q6P6X9 (Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-08
Identity = 88/331 (26.59%), Postives = 131/331 (39.58%), Query Frame = 0


Query: 7   TPNSGRQSL---FYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLED 66
           +P  G Q L      DL +PVT +   F   G A   S L          P P V T +D
Sbjct: 17  SPKPGAQFLPGFLMGDLPAPVTPQPRSFGLTGGAEIRSPL----LAGGSPPQPVVPTPKD 76

Query: 67  RSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQGS 126
           +SG+   P   I D      +   P               K   +  +TP+SG Q   G+
Sbjct: 77  KSGA--PPVRSIYDDLNGSAVGMSPLA-----------ARKQPFAGVHTPLSGLQGTPGT 136

Query: 127 AGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNE 186
               +   S      Q+ K                T  +P +V     Q + L +    +
Sbjct: 137 VSNFFSPVS------QQRK----------------TTLSPAQVDPFFTQGDALSSEDQLD 196

Query: 187 EEWLTVYGFSPADTNLVLREFEKCGEILKH--------------NRSDAHRALNKNGIQI 246
           + W+TV+GF PA  + +L +F + G ILKH              ++  A +AL+K+G   
Sbjct: 197 DTWITVFGFPPASASYILLQFAQYGNILKHVMSNTGNWMHVQYQSKLQARKALSKDGKIF 256

Query: 247 NGVLIVGVKP-VDLMHRQALDEKLNNPGFMVTPPVS---SRTSELLAMRGPARPYS-LQN 306
              +++GVKP +D    ++LD K +    + TPPV    + +  L   R   RP S    
Sbjct: 257 GEAIMIGVKPCIDKSVMESLD-KGSTSSSVFTPPVKAPCTPSHPLSTPRSVMRPLSAAYK 307

Query: 307 GNGSARQSGGTIASPSK--SLVSKVMDLMFG 314
            + S  Q      +P K  S VSK M+ MFG
Sbjct: 317 ASSSDYQVVSDQQTPKKDESFVSKAMEYMFG 307

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BLAST of Lsi02G030020 vs. ExPASy TrEMBL
Match: A0A5A7U592 (Nuclear pore complex protein NUP35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00200 PE=3 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 4.1e-157
Identity = 289/327 (88.38%), Postives = 296/327 (90.52%), Query Frame = 0


Query: 3   TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 62
           TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE
Sbjct: 4   TVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 63

Query: 63  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQG 122
           DRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  KNKSNASTSYTPI+GQ SRQG
Sbjct: 64  DRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPSRQG 123

Query: 123 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLN 182
           SAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP AKLN
Sbjct: 124 SAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLAKLN 183

Query: 183 EEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNGI 242
           EEEW+TVYGFSPADTNLVLREFEKCGEILKH               NRSDA +ALNKNGI
Sbjct: 184 EEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGI 243

Query: 243 QINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG 302
           QINGVLIVGVKPVD MHRQALDEKLNNPGFMV PPVSSRTSELLA RGP RPYSLQNGN 
Sbjct: 244 QINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMRPYSLQNGNT 303

Query: 303 SARQSGGTIASPSKSLVSKVMDLMFGV 315
           SAR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 304 SARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of Lsi02G030020 vs. ExPASy TrEMBL
Match: A0A0A0K7B2 (Nuclear pore complex protein NUP35 OS=Cucumis sativus OX=3659 GN=Csa_7G452990 PE=3 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 7.1e-157
Identity = 289/327 (88.38%), Postives = 296/327 (90.52%), Query Frame = 0


Query: 3   TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 62
           TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE
Sbjct: 4   TVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 63

Query: 63  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQG 122
           DRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  KNKSNASTSYTPISGQQSRQG
Sbjct: 64  DRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQSRQG 123

Query: 123 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLN 182
           SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP AKLN
Sbjct: 124 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLAKLN 183

Query: 183 EEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNGI 242
           EEEW+TVYGFSPADTNLVLREFEKCGEILKH               NRSDA +ALNKNGI
Sbjct: 184 EEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGI 243

Query: 243 QINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG 302
           QINGVLIVGVKPVD MHRQAL+E+LNNPGFMV PPVSSRTSELLA RGP RPY+LQNG  
Sbjct: 244 QINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQNGYT 303

Query: 303 SARQSGGTIASPSKSLVSKVMDLMFGV 315
           SAR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 304 SARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of Lsi02G030020 vs. ExPASy TrEMBL
Match: A0A6J1DCV4 (Nuclear pore complex protein NUP35 OS=Momordica charantia OX=3673 GN=LOC111019186 PE=3 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 1.2e-156
Identity = 285/327 (87.16%), Postives = 297/327 (90.83%), Query Frame = 0


Query: 3   TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 62
           T+HRTPNSGRQS+FYQDLASPVT+RKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE
Sbjct: 4   TLHRTPNSGRQSMFYQDLASPVTSRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 63

Query: 63  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQG 122
           DR  SDFSPESGIPDYP+SPEIKSDPRTPIQSHDFSS MKNKSNASTSYTP SGQQSRQG
Sbjct: 64  DR--SDFSPESGIPDYPLSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPTSGQQSRQG 123

Query: 123 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLN 182
           SAGFSWWSTSKGGGSEQEDKGKSSPVEG +QPGALI LPTPREVARPEVQRNC PA KLN
Sbjct: 124 SAGFSWWSTSKGGGSEQEDKGKSSPVEGXVQPGALIILPTPREVARPEVQRNCFPAGKLN 183

Query: 183 EEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNGI 242
           EEEW+TVYGFSPADTNLVLREFEKCGEILKH               NRSDAH+ALNKNG+
Sbjct: 184 EEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHKALNKNGV 243

Query: 243 QINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG 302
           QINGVLIVGVKPVD MHRQALDEK+NNPGFMV PPV SRT+ELLA RGP R Y+LQNGN 
Sbjct: 244 QINGVLIVGVKPVDPMHRQALDEKINNPGFMVIPPVPSRTTELLATRGPVRTYNLQNGNS 303

Query: 303 SARQSGGTIASPSKSLVSKVMDLMFGV 315
           +ARQSGGTIASPSKSLVSKVMDLMFGV
Sbjct: 304 NARQSGGTIASPSKSLVSKVMDLMFGV 328

[Close]

BLAST of Lsi02G030020 vs. ExPASy TrEMBL
Match: A0A1S3CH09 (Nuclear pore complex protein NUP35 OS=Cucumis melo OX=3656 GN=LOC103500791 PE=3 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 2.7e-156
Identity = 288/327 (88.07%), Postives = 295/327 (90.21%), Query Frame = 0


Query: 3   TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 62
           TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE
Sbjct: 4   TVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 63

Query: 63  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQG 122
           DRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  KNKSNASTSYTPI+GQ SRQG
Sbjct: 64  DRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPSRQG 123

Query: 123 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLN 182
           SAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP AKLN
Sbjct: 124 SAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLAKLN 183

Query: 183 EEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNGI 242
           EEEW+TVYGFSPADTNLVLREFEKCGEILKH               NRSDA +ALNKNGI
Sbjct: 184 EEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGI 243

Query: 243 QINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG 302
           QINGVLIVGVKPVD MHRQALDEKLNNPGFMV PPVSSRTSELLA RGP  PYSLQNGN 
Sbjct: 244 QINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMLPYSLQNGNT 303

Query: 303 SARQSGGTIASPSKSLVSKVMDLMFGV 315
           SAR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 304 SARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of Lsi02G030020 vs. ExPASy TrEMBL
Match: A0A6J1JYW9 (Nuclear pore complex protein NUP35 OS=Cucurbita maxima OX=3661 GN=LOC111488673 PE=3 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.3e-150
Identity = 279/328 (85.06%), Postives = 291/328 (88.72%), Query Frame = 0


Query: 3   TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 62
           TVHRT NSGRQSLFYQDLASPV+TR+GKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE
Sbjct: 4   TVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 63

Query: 63  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQG 122
           DRSGSDFSPESGIPDYPVSPE+KSDP TPIQSHDFSS MK+KSNASTS+TPIS QQSRQ 
Sbjct: 64  DRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNASTSHTPISAQQSRQA 123

Query: 123 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLN 182
           SAGFSWWST KGGGSEQEDKGKSSPVEGVIQPGALITL TPREVARPEVQRNCLPA KLN
Sbjct: 124 SAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAGKLN 183

Query: 183 EEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNGI 242
           EEEW+TVYGFSPADTNLVLREFEKCGEILKH               NRS AH+AL+KNGI
Sbjct: 184 EEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSKNGI 243

Query: 243 QINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG 302
           QING+LIVGVKPVD + RQ LDEKLNNPGFMV PPVSSRT+EL    GP RPY+ QNGN 
Sbjct: 244 QINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQNGNS 303

Query: 303 SARQSGG-TIASPSKSLVSKVMDLMFGV 315
            ARQSGG TIASPSKSLVSKVMDLMFGV
Sbjct: 304 YARQSGGTTIASPSKSLVSKVMDLMFGV 331

[Close]

BLAST of Lsi02G030020 vs. NCBI nr
Match: XP_038900103.1 (nuclear pore complex protein NUP35 [Benincasa hispida])

HSP 1 Score: 587.0 bits (1512), Expect = 9.4e-164
Identity = 303/330 (91.82%), Postives = 307/330 (93.03%), Query Frame = 0


Query: 1   MNT-VHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNT VHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTIVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQS 120
           TLEDRSGSDFSPESGI DYPVSPEIKSDPRTPIQSHDFSS +KNKSNASTSYTPISGQQS
Sbjct: 61  TLEDRSGSDFSPESGIADYPVSPEIKSDPRTPIQSHDFSSPLKNKSNASTSYTPISGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180

Query: 181 KLNEEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNK 240
           KLNEEEW+TVYGFSPADTNLVLREFEKCGEILKH               NRSDAHRALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240

Query: 241 NGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQN 300
           NGIQINGVLIVGVKPVD MHRQALDEKLN+PGFMVTPPVSSRTSELLA RG  RPY+LQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNHPGFMVTPPVSSRTSELLATRGLVRPYNLQN 300

Query: 301 GNGSARQSGGTIASPSKSLVSKVMDLMFGV 315
           GN SARQSGGTIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSSARQSGGTIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of Lsi02G030020 vs. NCBI nr
Match: KAA0051033.1 (nuclear pore complex protein NUP35 [Cucumis melo var. makuwa] >TYK03828.1 nuclear pore complex protein NUP35 [Cucumis melo var. makuwa])

HSP 1 Score: 563.9 bits (1452), Expect = 8.6e-157
Identity = 289/327 (88.38%), Postives = 296/327 (90.52%), Query Frame = 0


Query: 3   TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 62
           TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE
Sbjct: 4   TVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 63

Query: 63  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQG 122
           DRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  KNKSNASTSYTPI+GQ SRQG
Sbjct: 64  DRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPSRQG 123

Query: 123 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLN 182
           SAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP AKLN
Sbjct: 124 SAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLAKLN 183

Query: 183 EEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNGI 242
           EEEW+TVYGFSPADTNLVLREFEKCGEILKH               NRSDA +ALNKNGI
Sbjct: 184 EEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGI 243

Query: 243 QINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG 302
           QINGVLIVGVKPVD MHRQALDEKLNNPGFMV PPVSSRTSELLA RGP RPYSLQNGN 
Sbjct: 244 QINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMRPYSLQNGNT 303

Query: 303 SARQSGGTIASPSKSLVSKVMDLMFGV 315
           SAR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 304 SARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of Lsi02G030020 vs. NCBI nr
Match: XP_004141656.1 (nuclear pore complex protein NUP35 [Cucumis sativus] >KGN45595.1 hypothetical protein Csa_015598 [Cucumis sativus])

HSP 1 Score: 563.1 bits (1450), Expect = 1.5e-156
Identity = 289/327 (88.38%), Postives = 296/327 (90.52%), Query Frame = 0


Query: 3   TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 62
           TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE
Sbjct: 4   TVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 63

Query: 63  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQG 122
           DRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  KNKSNASTSYTPISGQQSRQG
Sbjct: 64  DRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQSRQG 123

Query: 123 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLN 182
           SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP AKLN
Sbjct: 124 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLAKLN 183

Query: 183 EEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNGI 242
           EEEW+TVYGFSPADTNLVLREFEKCGEILKH               NRSDA +ALNKNGI
Sbjct: 184 EEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGI 243

Query: 243 QINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG 302
           QINGVLIVGVKPVD MHRQAL+E+LNNPGFMV PPVSSRTSELLA RGP RPY+LQNG  
Sbjct: 244 QINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQNGYT 303

Query: 303 SARQSGGTIASPSKSLVSKVMDLMFGV 315
           SAR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 304 SARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of Lsi02G030020 vs. NCBI nr
Match: XP_022151212.1 (nuclear pore complex protein NUP35 [Momordica charantia])

HSP 1 Score: 562.4 bits (1448), Expect = 2.5e-156
Identity = 285/327 (87.16%), Postives = 297/327 (90.83%), Query Frame = 0


Query: 3   TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 62
           T+HRTPNSGRQS+FYQDLASPVT+RKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE
Sbjct: 4   TLHRTPNSGRQSMFYQDLASPVTSRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 63

Query: 63  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQG 122
           DR  SDFSPESGIPDYP+SPEIKSDPRTPIQSHDFSS MKNKSNASTSYTP SGQQSRQG
Sbjct: 64  DR--SDFSPESGIPDYPLSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPTSGQQSRQG 123

Query: 123 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLN 182
           SAGFSWWSTSKGGGSEQEDKGKSSPVEG +QPGALI LPTPREVARPEVQRNC PA KLN
Sbjct: 124 SAGFSWWSTSKGGGSEQEDKGKSSPVEGXVQPGALIILPTPREVARPEVQRNCFPAGKLN 183

Query: 183 EEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNGI 242
           EEEW+TVYGFSPADTNLVLREFEKCGEILKH               NRSDAH+ALNKNG+
Sbjct: 184 EEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHKALNKNGV 243

Query: 243 QINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG 302
           QINGVLIVGVKPVD MHRQALDEK+NNPGFMV PPV SRT+ELLA RGP R Y+LQNGN 
Sbjct: 244 QINGVLIVGVKPVDPMHRQALDEKINNPGFMVIPPVPSRTTELLATRGPVRTYNLQNGNS 303

Query: 303 SARQSGGTIASPSKSLVSKVMDLMFGV 315
           +ARQSGGTIASPSKSLVSKVMDLMFGV
Sbjct: 304 NARQSGGTIASPSKSLVSKVMDLMFGV 328

[Close]

BLAST of Lsi02G030020 vs. NCBI nr
Match: XP_008462444.1 (PREDICTED: nuclear pore complex protein NUP35 [Cucumis melo])

HSP 1 Score: 561.2 bits (1445), Expect = 5.5e-156
Identity = 288/327 (88.07%), Postives = 295/327 (90.21%), Query Frame = 0


Query: 3   TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 62
           TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE
Sbjct: 4   TVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLE 63

Query: 63  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTSYTPISGQQSRQG 122
           DRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  KNKSNASTSYTPI+GQ SRQG
Sbjct: 64  DRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPSRQG 123

Query: 123 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLN 182
           SAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP AKLN
Sbjct: 124 SAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLAKLN 183

Query: 183 EEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNGI 242
           EEEW+TVYGFSPADTNLVLREFEKCGEILKH               NRSDA +ALNKNGI
Sbjct: 184 EEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGI 243

Query: 243 QINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG 302
           QINGVLIVGVKPVD MHRQALDEKLNNPGFMV PPVSSRTSELLA RGP  PYSLQNGN 
Sbjct: 244 QINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMLPYSLQNGNT 303

Query: 303 SARQSGGTIASPSKSLVSKVMDLMFGV 315
           SAR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 304 SARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of Lsi02G030020 vs. TAIR 10
Match: AT3G16310.1 (mitotic phosphoprotein N' end (MPPN) family protein )

HSP 1 Score: 386.7 bits (992), Expect = 1.7e-107
Identity = 211/329 (64.13%), Postives = 246/329 (74.77%), Query Frame = 0


Query: 5   HRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDR 64
           HRTP SGRQSL +QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++TL+DR
Sbjct: 6   HRTPKSGRQSLLFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMYTLDDR 65

Query: 65  SGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSSMKNKSNASTSYTPISGQQSRQG 124
             SDFSPESGI DY  SP+ KSD RTP QS   +  +  K K  AS S++ ++ QQS+Q 
Sbjct: 66  --SDFSPESGIADYSASPDAKSDRRTPFQSSGKNIVTPGKGKLEASPSFSLLNAQQSQQV 125

Query: 125 SAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKL 184
           S   SWWS SK G S EQ+DKGK SPVEGV+QPGAL+TLP PREVARPEVQR  +P   L
Sbjct: 126 SGSPSWWSQSKAGSSTEQDDKGKGSPVEGVVQPGALVTLPPPREVARPEVQRQIIPTGNL 185

Query: 185 NEEEWLTVYGFSPADTNLVLREFEKCGEILKH---------------NRSDAHRALNKNG 244
           +EEEW+TVYGFSP DTNLVLREFEKCG +LKH               NRSDAH+ALNK G
Sbjct: 186 DEEEWVTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKALNKAG 245

Query: 245 IQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGN 304
           + INGV+IVGVKPVD + +QAL+E+LNN GFM  PP SS  +     R  +RP  LQNG+
Sbjct: 246 MMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTRN---TARPLSRPQYLQNGS 305

Query: 305 G-SARQSGGTIASPSKSLVSKVMDLMFGV 315
             S + SGG +ASPSKS+VSK  DLMFGV
Sbjct: 306 AFSPQPSGGAMASPSKSMVSKFFDLMFGV 329

The following BLAST results are available for this feature:

BLAST of Lsi02G030020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04326	2.5e-106	64.13	Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1...	[more]
Q6P6X9	1.8e-08	26.59	Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1	[more]

BLAST of Lsi02G030020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U592	4.1e-157	88.38	Nuclear pore complex protein NUP35 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0K7B2	7.1e-157	88.38	Nuclear pore complex protein NUP35 OS=Cucumis sativus OX=3659 GN=Csa_7G452990 PE...	[more]
A0A6J1DCV4	1.2e-156	87.16	Nuclear pore complex protein NUP35 OS=Momordica charantia OX=3673 GN=LOC11101918...	[more]
A0A1S3CH09	2.7e-156	88.07	Nuclear pore complex protein NUP35 OS=Cucumis melo OX=3656 GN=LOC103500791 PE=3 ...	[more]
A0A6J1JYW9	1.3e-150	85.06	Nuclear pore complex protein NUP35 OS=Cucurbita maxima OX=3661 GN=LOC111488673 P...	[more]

BLAST of Lsi02G030020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900103.1	9.4e-164	91.82	nuclear pore complex protein NUP35 [Benincasa hispida]	[more]
KAA0051033.1	8.6e-157	88.38	nuclear pore complex protein NUP35 [Cucumis melo var. makuwa] >TYK03828.1 nuclea...	[more]
XP_004141656.1	1.5e-156	88.38	nuclear pore complex protein NUP35 [Cucumis sativus] >KGN45595.1 hypothetical pr...	[more]
XP_022151212.1	2.5e-156	87.16	nuclear pore complex protein NUP35 [Momordica charantia]	[more]
XP_008462444.1	5.5e-156	88.07	PREDICTED: nuclear pore complex protein NUP35 [Cucumis melo]	[more]

BLAST of Lsi02G030020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16310.1	1.7e-107	64.13	mitotic phosphoprotein N' end (MPPN) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017389	Nucleoporin, NUP53	PIRSF	PIRSF038119	NUP53	coord: 2..314 e-value: 1.7E-77 score: 259.4
IPR017389	Nucleoporin, NUP53	PANTHER	PTHR21527	NUCLEOPORIN NUP35	coord: 1..314
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 181..214 e-value: 1.8E-8 score: 34.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 182..240 e-value: 1.1E-13 score: 52.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..136
None	No IPR available	CDD	cd12441	RRM_Nup53_like	coord: 184..241 e-value: 6.98268E-25 score: 93.445
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 184..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G030020.1	Lsi02G030020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051028	mRNA transport
biological_process	GO:0006607	NLS-bearing protein import into nucleus
biological_process	GO:0006999	nuclear pore organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0031965	nuclear membrane
cellular_component	GO:0044613	nuclear pore central transport channel
cellular_component	GO:0044615	nuclear pore nuclear basket
molecular_function	GO:0005543	phospholipid binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0017056	structural constituent of nuclear pore
molecular_function	GO:0003676	nucleic acid binding