Lsi02G029450 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G029450
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	chr02: 35592767 .. 35596182 (+)
RNA-Seq Expression	Lsi02G029450
Synteny	Lsi02G029450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACCAGCCGTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGACGTCAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTTTCCTTTCGTTTCCTTTTCTCTCCCTTTCTTTCCGTTATGGTCGTATAAAACTATTGTTAACGAGGAATAGGAAGAGGAAAATATAAAAGTGCAAAAAAGATGGGACAGTTTTTAGGTCTGAGTTTAATTGAGTATTGTTTGAAAATGTGTGAGAGGATGCTTTTGAGGTTAGGTTTTAATTTGTGATTCTAGCAGTTTTCAGTCGTCTCGAATTTGGATAGAATACAGAATGATTGGGCATTTTGAGTTTCATCTGAGTTTATTTGTACGACGAGGAAGCCTAATTTTCTTCAATTTGTAAGAAGGATGTTTACTACTTCGTTACTTCAAAGGAAATCGGTTGTCTTGCCGTTCTTGTAAGTTTGAGATATTATATATCAATTTGGTTGCCGTTTTTATACAGATACTTTTGTTTTCACAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGTAAGATCATGTATTATGGATAGTTCCACGTTTGAGTCTGATTTTTAATTCTTTTTGGATCTTAGTTGATTTTGTTTAATTTTCTTTTGCATGTTGCATTCTGTTTCTCTAGCAGGTTCTGATAGTAGAATTTTGGTCAGTATTGTCAATTTTTAATGTTGAAACATTACGGTGGTGCTGTATCAGGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTTGCTAGGTCAAACTCTAGGAGAAAACATAAGCCAGGTGAGGGCTTCAAGATATGGATTTCCTGCTAGAGTCAAGTTATTATGCTAAGATGATCGATTTATCGTGATTGGATCTGGTGCTGCTCCATACAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGTGAAATGTTTTCACTCTCTAATATATAACATTTGTTTCTAGTATCGTATTTTTCTCCTAGGTGTTTGAAATGTACTTTTCATGTTCACACCTTTCTCTTATTCATTATGTGGATTTGTATTATCTTTTTGCTTCCCTATTATTTTCCTCAATATGTAGTCTACATTTCACTTGCATATTTGCTGCCACACGGTCTGAAATTTGGGGCTCACGTGAATATTTGATGTTCTGTTATATATTCAGGAGGCAGTGAACCGGATGAACCATCAAAAAAGGCCGAACAAAGGTTTAAAAAGCACATTAAATAAAAGTTTAATTACTCTCAACTATAGTATTAGAAGATGTAGCATCACTGGGATATAAAATTAAAATGTTATTAATTTCTTGCAAACATTCTTCCTTGAGGTTGAGTTTATCCTTGTCTAAACAATGCAGCAGCGAGGCTGTGGTGACTCCTGCTAATGCTCTATCTGCTCCATATGTACGTCAATCTATCTTCATAGTTAGGATTCAGGAACAATCCTTACTAGAATGCAATCTAATTTTGTATTGTAATGTAAAAGTAAATATCTTTGCTGTCTAGCTGGTAATCTAATCTAGTGCACATCTGTTTACTTTTTGCCAATTCTGTATGCAGTTTATTATTTTTGAAGTTTTGAAAATTTTATTTTTGAATTTTAGTGTTTCCCCAAAAATGAATATGGTGATATGTATTTAGCAGAACATTGCTCGATACTAATTTCAAAGTCGAGATGTTGTAAACATTTCCTCTTTCAAATTATTGATAGCTTGATAATAGGGTTTGACCATGCGATACAATATGGTCTTTATTTTATGTTTGATTGCTGCAGGAGCATCATGAAAAGAATGATGGAGGACCATGCTCCACTTTGTTTATCGCGAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTGCAAGTGAGTTATACTTGCTCAGTGGTTCTGACACAACCTTTAGTGAGATTTGTGAATTGTGATAAAGTTAATTGGTATCTTATTCTCTCCTTTGTTGCATCCATGATTCTTATTTCTGCGAGGCATTGAAATGATCACATTACTTGATTAGGTTAAATTCTTATTTTTAAAACTTTATGAACCTTATATTTCTCTAATCATTATTAGTTTTACTTTTATGTAATGTATATTGCCAACAACATAATAAAGTTGGTTGCATAAACTTAAGACGAGATATTTCTAGACATTTTGGGATGATGGGACCAGTTCATCTGCCTGTGATGAACTATTTCTTACGTCTCAGACCTAAGTTATTTTTCTAGTTTAATTACCTTATTAATCAGAAGTACCAAGAAAAATGCTACGCTGATAGGAGTTTTGCTGAGCCATTGCAGTATATGATAACGCAATGAAAATGAAGTAAAAGATTTTATTCTTTATGATAGAAGTTTTATGGTCACATTATTACAATGCTAGATATCCTGGATTCAACGTTCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGTATGCAAGATTGTTTCTGGGAATTGTTGAGCTTTTATAATGCTCCAATTGTTCCTTACTCGTGGCCAAACATACTCCATTTTGAATTACAAGCACTGGTATGAGGATGAGTGGATTGCATTGCCTTCATTTTTCACTAAACCTAGTGCTTGTTCATATTATTTGGTATATACAATTTTTTTTTTCTAAATGATCTAATCTACTATGTTACCGTTGGGGATAAATCTTGCTTTAAATATATCAAATAATATATATTTGAAAGGAAAATCTTGCTTTCAAAATTACTTGATTTTTTTTTTCTTATTAGAAAGTCACACTTTCAGATCATGATCTTTGATGGAGGAGCCCATGTCAGACGAAATTTCCACTATTCTAACTTTTCAAATGAGAAACTTCGAGCATTCAAATTTGTTTCTCCAAAAAAAAAAAAGCACTCTCAAATATTCAATTTAGAAAGAACACAGAAGTAGTAGCCTTCTGATGTAGCCTTCTGATGTCCTTAGAGAGTGACGAGGTTCATCTTGAATATGGCTTCATTCACCTGATTGTCTTGTTCCAGGACATTGAACAGGCTAGTAAGGTTATGGAGGAGCTTCAGGGCAGCGTGTTACCATCATCAGACCGCGGCGGCATGCATATAGAGTATTTCTATTTAAATTGCTTCTTCATCTTTATTAATAGCTTCAACATATGATGAGTAATTGATTGATCTCGCATGTTATTTTCTAGGTATGCTCGGTCTAAAATGAGGAAGTCTTAG

mRNA sequence

ATGGCTCACCAGCCGTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGACGTCAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTTGCTAGGTCAAACTCTAGGAGAAAACATAAGCCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGTGAAATCAGCGAGGCTGTGGTGACTCCTGCTAATGCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGAGGACCATGCTCCACTTTGTTTATCGCGAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTGCAAATATCCTGGATTCAACGTTCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGACATTGAACAGGCTAGTAAGGTTATGGAGGAGCTTCAGGGCAGCGTGTTACCATCATCAGACCGCGGCGGCATGCATATAGAGTATGCTCGGTCTAAAATGAGGAAGTCTTAG

Coding sequence (CDS)

ATGGCTCACCAGCCGTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGACGTCAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTTGCTAGGTCAAACTCTAGGAGAAAACATAAGCCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGTGAAATCAGCGAGGCTGTGGTGACTCCTGCTAATGCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGAGGACCATGCTCCACTTTGTTTATCGCGAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTGCAAATATCCTGGATTCAACGTTCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGACATTGAACAGGCTAGTAAGGTTATGGAGGAGCTTCAGGGCAGCGTGTTACCATCATCAGACCGCGGCGGCATGCATATAGAGTATGCTCGGTCTAAAATGAGGAAGTCTTAG

Protein sequence

MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGEISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

Homology

[Close]

BLAST of Lsi02G029450 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.3e-13
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 25  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHA 84
           + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF N   A  A +A
Sbjct: 19  VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKNA 78

Query: 85  LNGVKFDPQSGSVLHIELARSNSR 109
           LNG++FDP++   L +E A++N++
Sbjct: 79  LNGIRFDPENPQTLRLEFAKANTK 100

[Close]

BLAST of Lsi02G029450 vs. ExPASy Swiss-Prot
Match: Q6DH13 (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.3e-13
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 13  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATF 72
           ++ + + S    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF
Sbjct: 7   SETNTSVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTF 66

Query: 73  YNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR 109
            +   A  A +ALNG++FDP+S   L +E A++N++
Sbjct: 67  DSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTK 100

[Close]

BLAST of Lsi02G029450 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-12
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 25  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHA 84
           + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +A
Sbjct: 21  VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 80

Query: 85  LNGVKFDPQSGSVLHIELARSNSR 109
           LNG++FDP++   L +E A++N++
Sbjct: 81  LNGIRFDPENPQTLRLEFAKANTK 102

[Close]

BLAST of Lsi02G029450 vs. ExPASy Swiss-Prot
Match: Q93062 (RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-12
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 13  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATF 72
           N P         + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F +F
Sbjct: 11  NTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSF 70

Query: 73  YNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR 109
            +   A  A +ALNG++FDP+    L +E A++N++
Sbjct: 71  DSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTK 104

[Close]

BLAST of Lsi02G029450 vs. ExPASy Swiss-Prot
Match: Q9WVB0 (RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-12
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 13  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATF 72
           N P         + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F +F
Sbjct: 11  NTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSF 70

Query: 73  YNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR 109
            +   A  A +ALNG++FDP+    L +E A++N++
Sbjct: 71  DSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTK 104

[Close]

BLAST of Lsi02G029450 vs. ExPASy TrEMBL
Match: A0A5A7V0X3 (Protein WHI4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00800 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 3.2e-136
Identity = 244/262 (93.13%), Postives = 248/262 (94.66%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKKTDANSQETSSDDG            + +EAVVTPA+A+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 251
           VLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Lsi02G029450 vs. ExPASy TrEMBL
Match: A0A0A0K772 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451410 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 4.2e-136
Identity = 244/262 (93.13%), Postives = 248/262 (94.66%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHLPYDPYYLYNQPDPTYSERSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKKTDANSQETSSDDG            + +EAVVTPANA+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPANAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 251
           VLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Lsi02G029450 vs. ExPASy TrEMBL
Match: A0A1S3CHB2 (LOW QUALITY PROTEIN: protein WHI4 OS=Cucumis melo OX=3656 GN=LOC103500737 PE=4 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.0e-134
Identity = 242/262 (92.37%), Postives = 246/262 (93.89%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKK  ANSQETSSDDG            + +EAVVTPA+A+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKPXANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 251
           VLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Lsi02G029450 vs. ExPASy TrEMBL
Match: A0A6J1HI97 (protein WHI4 OS=Cucurbita moschata OX=3662 GN=LOC111464580 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.3e-129
Identity = 232/262 (88.55%), Postives = 243/262 (92.75%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKK+D+N+QETSS+DG            + +EAVV P N LSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 251
           +LPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Lsi02G029450 vs. ExPASy TrEMBL
Match: A0A6J1D4Z1 (uncharacterized protein LOC111017052 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017052 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.2e-129
Identity = 233/261 (89.27%), Postives = 241/261 (92.34%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLY+QPDP YSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 52  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 111

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 112 GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 171

Query: 121 IDKRKKTDANSQETSSDDG-----------EISEAVVTPANALSAPYEHHEKNDGGPCST 180
           IDKRKK+D N+QETSSDDG           E SEAV+TP+NALS PYEHHEK DGG CST
Sbjct: 172 IDKRKKSDINAQETSSDDGGSEPDEPSKKTERSEAVMTPSNALSVPYEHHEKTDGGHCST 231

Query: 181 LFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSV 240
           LFIANLGPNCNEDEL EVL KYPGFNVLKLRAKSGMPVAFADFE++EQA KVMEELQGS+
Sbjct: 232 LFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSM 291

Query: 241 LPSSDRGGMHIEYARSKMRKS 251
           LPSSDRGGMHIEYARSKMRKS
Sbjct: 292 LPSSDRGGMHIEYARSKMRKS 312

[Close]

BLAST of Lsi02G029450 vs. NCBI nr
Match: XP_038898771.1 (protein WHI4 isoform X1 [Benincasa hispida])

HSP 1 Score: 497.3 bits (1279), Expect = 7.8e-137
Identity = 246/262 (93.89%), Postives = 248/262 (94.66%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKKTDANSQETSSDDG            +  EA+VTPANALSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPANALSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 251
           VLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Lsi02G029450 vs. NCBI nr
Match: KAA0059439.1 (protein WHI4 [Cucumis melo var. makuwa] >TYK03885.1 protein WHI4 [Cucumis melo var. makuwa])

HSP 1 Score: 494.2 bits (1271), Expect = 6.6e-136
Identity = 244/262 (93.13%), Postives = 248/262 (94.66%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKKTDANSQETSSDDG            + +EAVVTPA+A+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 251
           VLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Lsi02G029450 vs. NCBI nr
Match: XP_004141677.1 (protein WHI4 [Cucumis sativus] >XP_031745300.1 protein WHI4 [Cucumis sativus] >XP_031745301.1 protein WHI4 [Cucumis sativus] >KGN45535.1 hypothetical protein Csa_016405 [Cucumis sativus])

HSP 1 Score: 493.8 bits (1270), Expect = 8.7e-136
Identity = 244/262 (93.13%), Postives = 248/262 (94.66%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHLPYDPYYLYNQPDPTYSERSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKKTDANSQETSSDDG            + +EAVVTPANA+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPANAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 251
           VLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Lsi02G029450 vs. NCBI nr
Match: XP_008462363.2 (PREDICTED: LOW QUALITY PROTEIN: protein WHI4 [Cucumis melo])

HSP 1 Score: 489.2 bits (1258), Expect = 2.1e-134
Identity = 242/262 (92.37%), Postives = 246/262 (93.89%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKK  ANSQETSSDDG            + +EAVVTPA+A+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKPXANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 251
           VLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Lsi02G029450 vs. NCBI nr
Match: XP_023513427.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 473.4 bits (1217), Expect = 1.2e-129
Identity = 233/262 (88.93%), Postives = 243/262 (92.75%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKK+D+N+QETSS+DG            + +EAVV P N LSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 251
           +LPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Lsi02G029450 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 313.2 bits (801), Expect = 2.0e-85
Identity = 169/283 (59.72%), Postives = 203/283 (71.73%), Query Frame = 0


Query: 3   HQPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGF 62
           HQPYDP+Y+Y   + P       P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 63  DSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHK 122
           +SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +
Sbjct: 64  ESCQLKYTGRGDQVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKER 123

Query: 123 PGGGAYVVIDKRKKTDANSQETSSDDGEI---------------------SEAVVTPANA 182
           PG G YVVID R K  + SQ+  SD+G+                      SEA   P + 
Sbjct: 124 PGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSK 183

Query: 183 LSAPYEHHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMP 242
             +   H EK ++GG     CSTLFIANLGPNC EDELK++L +YPGF++LK+RA+ GMP
Sbjct: 184 APSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMP 243

Query: 243 VAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRK 250
           VAFADFE+IEQA+  M  LQG++L SSDRGGMHIEYARSKMRK
Sbjct: 244 VAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIEYARSKMRK 286

[Close]

BLAST of Lsi02G029450 vs. TAIR 10
Match: AT3G13700.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 287.0 bits (733), Expect = 1.5e-77
Identity = 161/293 (54.95%), Postives = 195/293 (66.55%), Query Frame = 0


Query: 3   HQPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGF 62
           HQPYDP+Y+Y   + P       P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 63  DSCQLKYTGRGNQ------------------VVAFATFYNHQSAVTALHALNGVKFDPQS 122
           +SCQLKYTGRG+Q                  VVAFATF +H+ A+ A++ LNGVKFDPQ+
Sbjct: 64  ESCQLKYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAMNELNGVKFDPQT 123

Query: 123 GSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGEI------------- 182
           GS LHIELARSNSRRK +PG G YVVID R K  + SQ+  SD+G+              
Sbjct: 124 GSNLHIELARSNSRRKERPGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDS 183

Query: 183 --------SEAVVTPANALSAPYEHHEK-NDGG----PCSTLFIANLGPNCNEDELKEVL 242
                   SEA   P +   +   H EK ++GG     CSTLFIANLGPNC EDELK++L
Sbjct: 184 PKENDTTKSEADSEPDSKAPSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLL 243

[Close]

BLAST of Lsi02G029450 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 162.2 bits (409), Expect = 5.6e-40
Identity = 102/261 (39.08%), Postives = 144/261 (55.17%), Query Frame = 0


Query: 2   AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ + 
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SS 91

Query: 62  RGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI 121
            G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Sbjct: 92  DGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL 151

Query: 122 DKRKKTDANSQE---TSSDDGEISEAVVT----PAN-------ALSAPYEHHEKNDGGPC 181
            K K  +  ++    +    G  S A  T    PA        A  AP          PC
Sbjct: 152 KKLKSWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSKAADPC 211

Query: 182 STLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQG 241
            TLFIAN+GPNC E EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +  LQG
Sbjct: 212 PTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQG 271

Query: 242 SVLPSSDRGG-MHIEYARSKM 248
           +VL SS  G  + ++YARS+M
Sbjct: 272 TVLYSSLTGEVLRLQYARSRM 285

[Close]

BLAST of Lsi02G029450 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-38
Identity = 101/262 (38.55%), Postives = 141/262 (53.82%), Query Frame = 0


Query: 2   AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ + 
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SS 91

Query: 62  RGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI 121
            G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Sbjct: 92  DGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL 151

Query: 122 DKRKKTDANSQE---TSSDDGEISEAVVT----PAN-------ALSAPYEHHEKNDGGPC 181
            K K  +  ++    +    G  S A  T    PA        A  AP          PC
Sbjct: 152 KKLKSWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSKAADPC 211

Query: 182 STLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQG 241
            TLFIAN+GPNC E EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +  LQG
Sbjct: 212 PTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQG 271

Query: 242 SVLPSSDRGGMHIEYARSKMRK 250
           +VL SS  G +    +R  MRK
Sbjct: 272 TVLYSSLTGEVLRLQSRMGMRK 286

[Close]

BLAST of Lsi02G029450 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.8 bits (390), Expect = 8.9e-38
Identity = 97/249 (38.96%), Postives = 135/249 (54.22%), Query Frame = 0


Query: 2   AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ + 
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SS 91

Query: 62  RGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI 121
            G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Sbjct: 92  DGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL 151

Query: 122 DKRKKTDANSQE---TSSDDGEISEAVVT----PAN-------ALSAPYEHHEKNDGGPC 181
            K K  +  ++    +    G  S A  T    PA        A  AP          PC
Sbjct: 152 KKLKSWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSKAADPC 211

Query: 182 STLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQG 237
            TLFIAN+GPNC E EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +  LQG
Sbjct: 212 PTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQG 271

The following BLAST results are available for this feature:

BLAST of Lsi02G029450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9YGP5	3.3e-13	42.86	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]
Q6DH13	4.3e-13	38.54	RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a...	[more]
Q9W6I1	1.3e-12	41.67	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
Q93062	2.1e-12	37.50	RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1...	[more]
Q9WVB0	2.1e-12	37.50	RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=...	[more]

BLAST of Lsi02G029450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0X3	3.2e-136	93.13	Protein WHI4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00800 P...	[more]
A0A0A0K772	4.2e-136	93.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451410 PE=4 SV=1	[more]
A0A1S3CHB2	1.0e-134	92.37	LOW QUALITY PROTEIN: protein WHI4 OS=Cucumis melo OX=3656 GN=LOC103500737 PE=4 S...	[more]
A0A6J1HI97	1.3e-129	88.55	protein WHI4 OS=Cucurbita moschata OX=3662 GN=LOC111464580 PE=4 SV=1	[more]
A0A6J1D4Z1	2.2e-129	89.27	uncharacterized protein LOC111017052 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lsi02G029450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898771.1	7.8e-137	93.89	protein WHI4 isoform X1 [Benincasa hispida]	[more]
KAA0059439.1	6.6e-136	93.13	protein WHI4 [Cucumis melo var. makuwa] >TYK03885.1 protein WHI4 [Cucumis melo v...	[more]
XP_004141677.1	8.7e-136	93.13	protein WHI4 [Cucumis sativus] >XP_031745300.1 protein WHI4 [Cucumis sativus] >X...	[more]
XP_008462363.2	2.1e-134	92.37	PREDICTED: LOW QUALITY PROTEIN: protein WHI4 [Cucumis melo]	[more]
XP_023513427.1	1.2e-129	88.93	U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi02G029450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13700.2	2.0e-85	59.72	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.1	1.5e-77	54.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.1	5.6e-40	39.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	1.4e-38	38.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.2	8.9e-38	38.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 27..101 e-value: 1.0E-5 score: 35.0 coord: 169..241 e-value: 2.7E-8 score: 43.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 28..91 e-value: 3.1E-7 score: 30.1 coord: 170..232 e-value: 5.4E-10 score: 39.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 26..105 score: 11.622288
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 168..245 score: 11.622288
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 21..109 e-value: 3.0E-21 score: 77.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 160..250 e-value: 4.7E-19 score: 70.3
None	No IPR available	PANTHER	PTHR10501:SF43	RNA-BINDING PROTEIN-RELATED	coord: 8..239
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 8..239
None	No IPR available	CDD	cd12245	RRM_scw1_like	coord: 166..244 e-value: 1.14627E-43 score: 140.417
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 26..101 e-value: 5.76577E-31 score: 108.126
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 26..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G029450.1	Lsi02G029450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding