Lsi02G029070 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G029070
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S3
Location	chr02: 35262299 .. 35264307 (+)
RNA-Seq Expression	Lsi02G029070
Synteny	Lsi02G029070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCAAATGAGCAAAAAGCGAAAGGTTGGTATCGAAATTTCCTCTTCATTTTATATTTTTGACGATACACAAAGCATTGTACCCAGTTTGATGTTATCGAGTCTTATTTTATTCAATCGGATACAGTTTGTGGCTGATGGAGTGTTCTTCGCGGAGCTTAACGAAGTTCTAACCAGAGAGCTTGCAGAGGATGGATACTCCGGTGTGGAGGTTAGGGTTACACCTATGCGGACTGAGATTATCATTAGGGCTACTCGCACACAGAATGTTCTTGGTAAGAGTTTTTTTTTGTTTTTTGTTTTTTATTTTTTTATTTTTAATCTCGTATTTTTGATGTTCTTCCTGCGAATTATCGGAATATGTTTGGGAAGATTGAGTCTGTTTTTGTTTCTTATCAATCCACCACTACGAGTGTCTTTCTGTTTTTTCCTTCTTTTTTTTCTGCCCATTTCTTTAACTTCAAATCTCCGCACCTAATTCTTGATTCGCGTATTCATCTCTAATTGGAATCTTATGTAATTCTTACGACATTGAATCTCGAATTTTAGGATTTGTAGAATCTTAGACAGGCATAAGGAATTGTGTTGAAGTGTTAGTGCTTTGTGATTTGTTAAGGCCTCGAAAACTGGTGGGATGTCTCTTGTTGAAATTACCTTCGGTAAATAAGGTGACTCAGGTGGGGGTTAAGTAAAATGTACAGTTCAACTGTGTTTGTTGGTGCTGGATTCTTGACATAGTTGAATTTTTCGTTTGTGGAGGTTATTGGCGGTGTTGCTTGATTCGAGTTTTGAAGTTTAACATCATTGGAGGGTATGGATGTAAATCTTATCTACTCTGCCAATGCCTTAAAATCATTTTGCATACTTTGAAGTAAATTTGAATTCTTAGTTCAATAGCCATTTCATTTTCCTTACAAGGGTCGAGAGATTAAATGTCATATTACCTGTAGAGTAGTCTAATTTAGGTGTTCTCAGTCATTATTGCGTGTGGTTCTGGTTTCTGAATATGAATTCAATCATGACTTCAGGTGAGAAAGGAAGGAGAATTAGAGAATTGACATCTGTTGTTCAGAAGCGTTTCAAGTTTCCCGAAAACAGTGTCGAGCTATATGCTGAAAAGGTCAACAACAGAGGACTCTGTGCCATTGCTCAAGCTGAGTCTCTTCGCTACAAGCTTCTAGGAGGCCTTGCTGTGAGAAGGTATATAATAGAAATTGTGGATGCGATTATTGTGTGCCGTGTTGTAGTTTCTAGCTTGATTGGAAACTTTCAATCTAGGTGTTTGTGAGGATGTAATGATGGAAATTTTCCTCCCGAGTGCTAGTTGTTTGGTTTGGAACTATGTCATCAGACGCGCTAAGCTCTTTATTTGTGGGCAATCGATCCTATTAAGCATTGGTTTTTCATTTTTTTCAGGGCTTGCTATGGTGTCCTTAGATTTGTCATGGAGAGTGGAGCTAAAGGATGTGAGGTCAGTCCTAATTCTCTTTATGGTATTTGTTCTTAATGTTTCGGAACCAACTATCCAGTTTATTACATCTTTATTAACTTGTATTCTGAATCATGCAGGTTATTGTTAGTGGTAAGCTGAGGGCTCAGCGTGCAAAATCCATGAAATTCAAGGATGGTTACATGATATCGTCCGGACAGCCGGTGAAAGAGTACATAGACTCTGCCGTGAGACACGTTCTCCTTAGACAGGTCAGTTCAGTATCATCTCGGGAGAAGGGGCTTCTTAGCTTCCTGCTCCTAATGGCATATTGCTTTCTTAAATCACACCTGTGGGTGCTTCTGTTCTTTAATTGATGTCTCTGTTTCTTTATTTTTCAGGGTGTTTTGGGTATCAAGGTCAAGATCATGCTTGATTGGGACCCGAAGGGTAAGCAAGGTCCACCGACGCCGCTTCCAGATTTGGTTACCATCCATACTCCCAAGGAGGAAGAGGATTTCGTTAGGCCTGTGGCTGTGATTCCGACGGCCGAGATTGAAGTTGGAGCAGCTTAA

mRNA sequence

ATGGCTACTCAAATGAGCAAAAAGCGAAAGTTTGTGGCTGATGGAGTGTTCTTCGCGGAGCTTAACGAAGTTCTAACCAGAGAGCTTGCAGAGGATGGATACTCCGGTGTGGAGGTTAGGGTTACACCTATGCGGACTGAGATTATCATTAGGGCTACTCGCACACAGAATGTTCTTGGTGAGAAAGGAAGGAGAATTAGAGAATTGACATCTGTTGTTCAGAAGCGTTTCAAGTTTCCCGAAAACAGTGTCGAGCTATATGCTGAAAAGGTCAACAACAGAGGACTCTGTGCCATTGCTCAAGCTGAGTCTCTTCGCTACAAGCTTCTAGGAGGCCTTGCTGTGAGAAGGGCTTGCTATGGTGTCCTTAGATTTGTCATGGAGAGTGGAGCTAAAGGATGTGAGGTTATTGTTAGTGGTAAGCTGAGGGCTCAGCGTGCAAAATCCATGAAATTCAAGGATGGTTACATGATATCGTCCGGACAGCCGGTGAAAGAGTACATAGACTCTGCCGTGAGACACGTTCTCCTTAGACAGGGTGTTTTGGGTATCAAGGTCAAGATCATGCTTGATTGGGACCCGAAGGGTAAGCAAGGTCCACCGACGCCGCTTCCAGATTTGGTTACCATCCATACTCCCAAGGAGGAAGAGGATTTCGTTAGGCCTGTGGCTGTGATTCCGACGGCCGAGATTGAAGTTGGAGCAGCTTAA

Coding sequence (CDS)

ATGGCTACTCAAATGAGCAAAAAGCGAAAGTTTGTGGCTGATGGAGTGTTCTTCGCGGAGCTTAACGAAGTTCTAACCAGAGAGCTTGCAGAGGATGGATACTCCGGTGTGGAGGTTAGGGTTACACCTATGCGGACTGAGATTATCATTAGGGCTACTCGCACACAGAATGTTCTTGGTGAGAAAGGAAGGAGAATTAGAGAATTGACATCTGTTGTTCAGAAGCGTTTCAAGTTTCCCGAAAACAGTGTCGAGCTATATGCTGAAAAGGTCAACAACAGAGGACTCTGTGCCATTGCTCAAGCTGAGTCTCTTCGCTACAAGCTTCTAGGAGGCCTTGCTGTGAGAAGGGCTTGCTATGGTGTCCTTAGATTTGTCATGGAGAGTGGAGCTAAAGGATGTGAGGTTATTGTTAGTGGTAAGCTGAGGGCTCAGCGTGCAAAATCCATGAAATTCAAGGATGGTTACATGATATCGTCCGGACAGCCGGTGAAAGAGTACATAGACTCTGCCGTGAGACACGTTCTCCTTAGACAGGGTGTTTTGGGTATCAAGGTCAAGATCATGCTTGATTGGGACCCGAAGGGTAAGCAAGGTCCACCGACGCCGCTTCCAGATTTGGTTACCATCCATACTCCCAAGGAGGAAGAGGATTTCGTTAGGCCTGTGGCTGTGATTCCGACGGCCGAGATTGAAGTTGGAGCAGCTTAA

Protein sequence

MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGAA

Homology

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BLAST of Lsi02G029070 vs. ExPASy Swiss-Prot
Match: Q9FJA6 (40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 5.0e-112
Identity = 204/229 (89.08%), Postives = 218/229 (95.20%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP KEYID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTA 230
           VLG+KVKIMLDWDPKGKQGP TPLPD+V IHTPKE++ ++ P  V+  A
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQA 229

[Close]

BLAST of Lsi02G029070 vs. ExPASy Swiss-Prot
Match: Q9M339 (40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 2.8e-110
Identity = 205/235 (87.23%), Postives = 214/235 (91.06%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP KEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGA 236
           VLGIKVK+MLDWDPKG  GP TPLPD+V IH+PKEEE    P  V   A +   A
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVAAPAALVADA 235

[Close]

BLAST of Lsi02G029070 vs. ExPASy Swiss-Prot
Match: Q9SIP7 (40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 5.2e-109
Identity = 200/222 (90.09%), Postives = 210/222 (94.59%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP KEYID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRP 223
           VLGIKVKIMLDWDP GK GP TPLPD+V IH PK++  +  P
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAP 222

[Close]

BLAST of Lsi02G029070 vs. ExPASy Swiss-Prot
Match: P02350 (40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2)

HSP 1 Score: 354.4 bits (908), Expect = 1.0e-96
Identity = 186/231 (80.52%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEI 232
           VLGIKVKIML WDP GK GP  PLPD V+I  PK+E        ++PT  I
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--------IVPTTPI 223

[Close]

BLAST of Lsi02G029070 vs. ExPASy Swiss-Prot
Match: P47835 (40S ribosomal protein S3-B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.0e-96
Identity = 186/231 (80.52%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MA QMSKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVLG
Sbjct: 1   MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEI 232
           VLGIKVKIML WDP GK GP  PLPD V+I  PK+E        ++PT  I
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--------IVPTTPI 223

[Close]

BLAST of Lsi02G029070 vs. ExPASy TrEMBL
Match: A0A6J1GQ60 (40S ribosomal protein S3-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456093 PE=3 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.2e-124
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGAA 237
           VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDF+RPVAVIPTAEIEV AA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRPVAVIPTAEIEVEAA 236

[Close]

BLAST of Lsi02G029070 vs. ExPASy TrEMBL
Match: A0A6J1D813 (40S ribosomal protein S3-3 OS=Momordica charantia OX=3673 GN=LOC111017761 PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 2.0e-124
Identity = 233/236 (98.73%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGAA 237
           VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEE+F+RPVAVIPTAEIEV AA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEEFIRPVAVIPTAEIEVAAA 236

[Close]

BLAST of Lsi02G029070 vs. ExPASy TrEMBL
Match: A0A5D3BYH2 (40S ribosomal protein S3-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001190 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.5e-124
Identity = 235/237 (99.16%), Postives = 236/237 (99.58%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPV-AVIPTAEIEVGAA 237
           VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDF+RPV AVIPTAEIEVGAA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRPVAAVIPTAEIEVGAA 237

[Close]

BLAST of Lsi02G029070 vs. ExPASy TrEMBL
Match: A0A6J1JPM9 (40S ribosomal protein S3-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488704 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 7.7e-124
Identity = 233/236 (98.73%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGAA 237
           VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDF+RPVAVIPTAEIEV AA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRPVAVIPTAEIEVEAA 236

[Close]

BLAST of Lsi02G029070 vs. ExPASy TrEMBL
Match: A0A6J1KD29 (40S ribosomal protein S3-3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494511 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.0e-123
Identity = 232/236 (98.31%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGAA 237
           VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIH PKEEE+F+RPVAVIPTAEIEV AA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHIPKEEEEFIRPVAVIPTAEIEVAAA 236

[Close]

BLAST of Lsi02G029070 vs. NCBI nr
Match: XP_022953609.1 (40S ribosomal protein S3-3-like [Cucurbita moschata] >KAG6575449.1 40S ribosomal protein S3-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013991.1 40S ribosomal protein S3-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 455.7 bits (1171), Expect = 2.5e-124
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGAA 237
           VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDF+RPVAVIPTAEIEV AA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRPVAVIPTAEIEVEAA 236

[Close]

BLAST of Lsi02G029070 vs. NCBI nr
Match: XP_004141698.1 (40S ribosomal protein S3-3 [Cucumis sativus])

HSP 1 Score: 455.7 bits (1171), Expect = 2.5e-124
Identity = 233/236 (98.73%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGAA 237
           VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIH+PKEEEDF+RPVAVIPT EIEVGAA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHSPKEEEDFIRPVAVIPTTEIEVGAA 236

[Close]

BLAST of Lsi02G029070 vs. NCBI nr
Match: XP_022149321.1 (40S ribosomal protein S3-3 [Momordica charantia])

HSP 1 Score: 454.9 bits (1169), Expect = 4.2e-124
Identity = 233/236 (98.73%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGAA 237
           VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEE+F+RPVAVIPTAEIEV AA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEEFIRPVAVIPTAEIEVAAA 236

[Close]

BLAST of Lsi02G029070 vs. NCBI nr
Match: XP_023547512.1 (40S ribosomal protein S3-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 454.1 bits (1167), Expect = 7.2e-124
Identity = 233/236 (98.73%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGAA 237
           VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDF+RP AVIPTAEIEV AA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRPAAVIPTAEIEVEAA 236

[Close]

BLAST of Lsi02G029070 vs. NCBI nr
Match: KAA0059405.1 (40S ribosomal protein S3-3 [Cucumis melo var. makuwa] >TYK03922.1 40S ribosomal protein S3-3 [Cucumis melo var. makuwa])

HSP 1 Score: 454.1 bits (1167), Expect = 7.2e-124
Identity = 235/237 (99.16%), Postives = 236/237 (99.58%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPV-AVIPTAEIEVGAA 237
           VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDF+RPV AVIPTAEIEVGAA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRPVAAVIPTAEIEVGAA 237

[Close]

BLAST of Lsi02G029070 vs. TAIR 10
Match: AT5G35530.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 405.2 bits (1040), Expect = 3.6e-113
Identity = 204/229 (89.08%), Postives = 218/229 (95.20%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP KEYID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTA 230
           VLG+KVKIMLDWDPKGKQGP TPLPD+V IHTPKE++ ++ P  V+  A
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQA 229

[Close]

BLAST of Lsi02G029070 vs. TAIR 10
Match: AT3G53870.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 399.4 bits (1025), Expect = 2.0e-111
Identity = 205/235 (87.23%), Postives = 214/235 (91.06%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP KEYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRPVAVIPTAEIEVGA 236
           VLGIKVK+MLDWDPKG  GP TPLPD+V IH+PKEEE    P  V   A +   A
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVAAPAALVADA 235

[Close]

BLAST of Lsi02G029070 vs. TAIR 10
Match: AT2G31610.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 395.2 bits (1014), Expect = 3.7e-110
Identity = 200/222 (90.09%), Postives = 210/222 (94.59%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP KEYID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFVRP 223
           VLGIKVKIMLDWDP GK GP TPLPD+V IH PK++  +  P
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAP 222

The following BLAST results are available for this feature:

BLAST of Lsi02G029070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJA6	5.0e-112	89.08	40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1	[more]
Q9M339	2.8e-110	87.23	40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1	[more]
Q9SIP7	5.2e-109	90.09	40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1	[more]
P02350	1.0e-96	80.52	40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2	[more]
P47835	1.0e-96	80.52	40S ribosomal protein S3-B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1	[more]

BLAST of Lsi02G029070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQ60	1.2e-124	99.15	40S ribosomal protein S3-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456093 PE...	[more]
A0A6J1D813	2.0e-124	98.73	40S ribosomal protein S3-3 OS=Momordica charantia OX=3673 GN=LOC111017761 PE=3 S...	[more]
A0A5D3BYH2	3.5e-124	99.16	40S ribosomal protein S3-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1JPM9	7.7e-124	98.73	40S ribosomal protein S3-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488704 PE=3...	[more]
A0A6J1KD29	1.0e-123	98.31	40S ribosomal protein S3-3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149451...	[more]

BLAST of Lsi02G029070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953609.1	2.5e-124	99.15	40S ribosomal protein S3-3-like [Cucurbita moschata] >KAG6575449.1 40S ribosomal...	[more]
XP_004141698.1	2.5e-124	98.73	40S ribosomal protein S3-3 [Cucumis sativus]	[more]
XP_022149321.1	4.2e-124	98.73	40S ribosomal protein S3-3 [Momordica charantia]	[more]
XP_023547512.1	7.2e-124	98.73	40S ribosomal protein S3-3-like [Cucurbita pepo subsp. pepo]	[more]
KAA0059405.1	7.2e-124	99.16	40S ribosomal protein S3-3 [Cucumis melo var. makuwa] >TYK03922.1 40S ribosomal ...	[more]

BLAST of Lsi02G029070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35530.1	3.6e-113	89.08	Ribosomal protein S3 family protein	[more]
AT3G53870.1	2.0e-111	87.23	Ribosomal protein S3 family protein	[more]
AT2G31610.1	3.7e-110	90.09	Ribosomal protein S3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 93..219 e-value: 2.0E-66 score: 223.7
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	SUPERFAMILY	54821	Ribosomal protein S3 C-terminal domain	coord: 93..191
IPR004044	K Homology domain, type 2	PFAM	PF07650	KH_2	coord: 20..93 e-value: 1.0E-12 score: 47.6
IPR004044	K Homology domain, type 2	PROSITE	PS50823	KH_TYPE_2	coord: 21..92 score: 11.333969
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 1..91 e-value: 1.9E-48 score: 164.4
IPR001351	Ribosomal protein S3, C-terminal	PFAM	PF00189	Ribosomal_S3_C	coord: 106..188 e-value: 5.0E-25 score: 87.8
IPR005703	Ribosomal protein S3, eukaryotic/archaeal	TIGRFAM	TIGR01008	TIGR01008	coord: 8..210 e-value: 2.2E-71 score: 237.6
None	No IPR available	PANTHER	PTHR11760:SF52	40S RIBOSOMAL PROTEIN S3-RELATED	coord: 3..232
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 3..232
None	No IPR available	CDD	cd02413	40S_S3_KH	coord: 15..95 e-value: 3.27982E-51 score: 159.31
IPR018280	Ribosomal protein S3, conserved site	PROSITE	PS00548	RIBOSOMAL_S3	coord: 147..183
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 10..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G029070.1	Lsi02G029070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding