Lsi02G028980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G028980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription initiation factor TFIID subunit 9
Location	chr02: 35222094 .. 35223755 (-)
RNA-Seq Expression	Lsi02G028980
Synteny	Lsi02G028980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGTCGTGGAAGTGGTGGTGGATATGACAATCAAAACACTAATTTCTCTCCCGAAGCACGACCTTCACAATTGGGTATGCTGGCATTTCTTTTCTTTCCATTGATGATCCCATTTAGTTCTTACTCTTACTTCTTGTCCAGTTTTATTCAATTTTTTATGGGTAGTTTGAGATTTTATTACAACTGATTTAGGTCGATTTCTGTTCGTGATTTGATCTTATAGATCAAATTAATTTGGGTAGTTTGAGTTGTTACTTCTTGGATTAATTTTGAGAAATTGGATTAAAATAGAGAAGAAAATATGAAGAAAATGTCCAAGGCATAAATTAAAGAAAAGGGAAAAAAAAGCCCTAATTTTCATCTTCTACCTCTCCCTCACAGTCATCGGCCCCATTCTCCCCTCTATTGTTCATCTTCTTCTCTGGCGTCACTCCCTCCCTGTGATGTGTCTCCGGTGACCTTCAGCCGTTGCATGCAGTTCTCCCCTCTCTTGACTGCAGGCACTAGGCAGTGGCGTCTTCTTCAAAGGGTTATTTAACCATTGAGTGCCGCACTCAAGCAAGACTTAGTTATGTTTGGCGTTTGACACAAAGACAGAAATATTTTTTGGTTTACCTTAGAAACCATTTGTAATAAATTGCTTAGTGTAAGTTGTTATGGTCTTTTATTGTTATGTTTTTTGCATTATCATTATGATGGCTATTCTTATGATTGATGGAATATCAGTTTAGCAAATTACAAGAATACTATAAATTTCTTATGCAGGTGAAAAGGGCAGTAAGGAAATGTCTGAGGGAGACGAGGAGCTACCGAGGGATGCAAAAATTGTGAAAACACTTTTGAAATCAATGGGAGTTGAAGATTATGAACCACGTGTTATACACCAGTTTCTTGAGCTATGGTATCGTTATGTTGTCGACGTACTGACGGATGCACAAGTATATTCGGAGCATGCAGGCAAGGCTGCCATCGATTGTGATGATGTGAAGCTTGCTATCCAGTCCAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTAACATGGCTTCATAGTCCAAATTAGATGTGATTTGTCTGTAGATAAAATGTTTGGACACTTGATCTCTGATATAGGAGTTACTGATAGGCAGTCTTTTGAAATGAATTCTTTGAGTAATATGGCAATCCCGATCCCTAATAAGTTATACTCTATCTTAAAATCGAATCAACGTCTTGTTAGCGAGAAATATCTGTGTGTGTGTGGAAGAATATGCAGCCTTGAAGAAAAAGGCTTAGAGAGGGTATATACTTATGGTATCTTATAGAAATAAGATCATATTCATGGATTTTCCTTGCTATCGTCAAGTGTTTAACCATGACTTTCTTTTCTGTCAGGTTCTTCTGGAGTTGGCCAGAAACAGGAATAAGATTCCATTGCCAAGGTCGATTGGCGGGCCTGGTATCGCCCTTCCACCCGATCAAGACACATTGCTCAGTCCCAACTATCAACTAGCAATCCCAAAGAGGCAACCAGTCGAAACAATGGAAGAAACAGAAGAAGATGAAGGTGACGACGCAGTTCCATCCCAAGAACCCAGCTCAGAAGTACCTCAACAACATACCCCACAAAGAGTATCTTTCCCATTGGCAAAACGTTCAAAAATAACATAG

mRNA sequence

ATGATGAGTCGTGGAAGTGGTGGTGGATATGACAATCAAAACACTAATTTCTCTCCCGAAGCACGACCTTCACAATTGGGTGAAAAGGGCAGTAAGGAAATGTCTGAGGGAGACGAGGAGCTACCGAGGGATGCAAAAATTGTGAAAACACTTTTGAAATCAATGGGAGTTGAAGATTATGAACCACGTGTTATACACCAGTTTCTTGAGCTATGGTATCGTTATGTTGTCGACGTACTGACGGATGCACAAGTATATTCGGAGCATGCAGGCAAGGCTGCCATCGATTGTGATGATGTGAAGCTTGCTATCCAGTCCAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTTCTTCTGGAGTTGGCCAGAAACAGGAATAAGATTCCATTGCCAAGGTCGATTGGCGGGCCTGGTATCGCCCTTCCACCCGATCAAGACACATTGCTCAGTCCCAACTATCAACTAGCAATCCCAAAGAGGCAACCAGTCGAAACAATGGAAGAAACAGAAGAAGATGAAGGTGACGACGCAGTTCCATCCCAAGAACCCAGCTCAGAAGTACCTCAACAACATACCCCACAAAGAGTATCTTTCCCATTGGCAAAACGTTCAAAAATAACATAG

Coding sequence (CDS)

ATGATGAGTCGTGGAAGTGGTGGTGGATATGACAATCAAAACACTAATTTCTCTCCCGAAGCACGACCTTCACAATTGGGTGAAAAGGGCAGTAAGGAAATGTCTGAGGGAGACGAGGAGCTACCGAGGGATGCAAAAATTGTGAAAACACTTTTGAAATCAATGGGAGTTGAAGATTATGAACCACGTGTTATACACCAGTTTCTTGAGCTATGGTATCGTTATGTTGTCGACGTACTGACGGATGCACAAGTATATTCGGAGCATGCAGGCAAGGCTGCCATCGATTGTGATGATGTGAAGCTTGCTATCCAGTCCAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTTCTTCTGGAGTTGGCCAGAAACAGGAATAAGATTCCATTGCCAAGGTCGATTGGCGGGCCTGGTATCGCCCTTCCACCCGATCAAGACACATTGCTCAGTCCCAACTATCAACTAGCAATCCCAAAGAGGCAACCAGTCGAAACAATGGAAGAAACAGAAGAAGATGAAGGTGACGACGCAGTTCCATCCCAAGAACCCAGCTCAGAAGTACCTCAACAACATACCCCACAAAGAGTATCTTTCCCATTGGCAAAACGTTCAAAAATAACATAG

Protein sequence

MMSRGSGGGYDNQNTNFSPEARPSQLGEKGSKEMSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKRQPVETMEETEEDEGDDAVPSQEPSSEVPQQHTPQRVSFPLAKRSKIT

Homology

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BLAST of Lsi02G028980 vs. ExPASy Swiss-Prot
Match: Q9SYH2 (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 7.5e-67
Identity = 132/181 (72.93%), Postives = 150/181 (82.87%), Query Frame = 0


Query: 36  EGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 95
           EG+E++PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 96  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 155
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 156 YQLAIPKRQPVETMEETEEDE--------GDDAVPSQEPSSEVPQQHTPQRVSFPLAKRS 209
           YQL IPK+      EETE+DE          +    Q+ +S++P Q TPQRVSFPL++R 
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQ-TPQRVSFPLSRRP 183

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BLAST of Lsi02G028980 vs. ExPASy Swiss-Prot
Match: Q17QQ4 (Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.3e-30
Identity = 61/120 (50.83%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 39  EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 98
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 99  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 158
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

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BLAST of Lsi02G028980 vs. ExPASy Swiss-Prot
Match: Q8VI33 (Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.6e-29
Identity = 72/163 (44.17%), Postives = 104/163 (63.80%), Query Frame = 0


Query: 39  EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 98
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 99  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 158
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 159 -AIPKRQPVETMEETEEDEGDDAVPSQEPSSEVPQQHTPQRVS 201
            ++ K+ P      T       +V S  PS+      TPQ +S
Sbjct: 130 KSLQKKAPAPAGRITVPRLSVGSV-SSRPSTPTLGTPTPQTMS 171

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BLAST of Lsi02G028980 vs. ExPASy Swiss-Prot
Match: Q6NZA9 (Transcription initiation factor TFIID subunit 9B OS=Mus musculus OX=10090 GN=Taf9b PE=1 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 6.2e-29
Identity = 62/125 (49.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 42  PRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVK 101
           PRDA ++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K  +D DDV+
Sbjct: 13  PRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVR 72

Query: 102 LAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL-AI 161
           LAIQ + + SF+ PPPR+ LL++AR +N+ PLP      G  LPPD+  L +PNY+L ++
Sbjct: 73  LAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSL 132

Query: 162 PKRQP 166
            K+ P
Sbjct: 133 VKKGP 137

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BLAST of Lsi02G028980 vs. ExPASy Swiss-Prot
Match: Q5BKE0 (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN=Taf9 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 71/163 (43.56%), Postives = 103/163 (63.19%), Query Frame = 0


Query: 39  EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 98
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K  +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 99  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 158
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 159 -AIPKRQPVETMEETEEDEGDDAVPSQEPSSEVPQQHTPQRVS 201
            ++ K+ P      T       +V S  PS+      TPQ +S
Sbjct: 130 KSLQKKAPTPAGRITVPRLSVGSV-SSRPSTPTLGTPTPQAMS 171

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BLAST of Lsi02G028980 vs. ExPASy TrEMBL
Match: A0A6J1GPP8 (transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN=LOC111456006 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.0e-102
Identity = 192/206 (93.20%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 5   GSGGGYDNQNTNFSPEARPSQLGEKGSKEMSEGDEELPRDAKIVKTLLKSMGVEDYEPRV 64
           G GGGYDNQNTNFSPEARPSQLG++G KEMSEGDE+LPRDAKIVKTLLKSMGVEDYEPRV
Sbjct: 12  GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRV 71

Query: 65  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 124
           IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL
Sbjct: 72  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 131

Query: 125 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKRQPVETMEETEEDEGDDAVPSQ 184
           ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIP+++ VE MEETEEDEG DAVPSQ
Sbjct: 132 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDAVPSQ 191

Query: 185 EPSSEVPQQHTPQRVSFPLAKRSKIT 211
           EPS+EVPQQHTPQRVSFPL+KR KIT
Sbjct: 192 EPSTEVPQQHTPQRVSFPLSKRPKIT 217

[Close]

BLAST of Lsi02G028980 vs. ExPASy TrEMBL
Match: A0A6J1JZ27 (transcription initiation factor TFIID subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111488713 PE=3 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 6.9e-100
Identity = 189/206 (91.75%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 5   GSGGGYDNQNTNFSPEARPSQLGEKGSKEMSEGDEELPRDAKIVKTLLKSMGVEDYEPRV 64
           G GGGYDNQNTNFSPEAR SQLG++G KEMSEGDE+LPRDA+IVKTLLKSMGVEDYEPRV
Sbjct: 8   GGGGGYDNQNTNFSPEARTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGVEDYEPRV 67

Query: 65  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 124
           IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL
Sbjct: 68  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 127

Query: 125 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKRQPVETMEETEEDEGDDAVPSQ 184
           ARNRNKIPLPRSIGGPGIALPPD DTLLSPNYQLAIPK++PVE MEETEEDEG D VPSQ
Sbjct: 128 ARNRNKIPLPRSIGGPGIALPPDIDTLLSPNYQLAIPKKRPVEAMEETEEDEGVDTVPSQ 187

Query: 185 EPSSEVPQQHTPQRVSFPLAKRSKIT 211
           E S+EVPQQHTPQRVSFPL+KR KIT
Sbjct: 188 ELSTEVPQQHTPQRVSFPLSKRPKIT 213

[Close]

BLAST of Lsi02G028980 vs. ExPASy TrEMBL
Match: A0A6J1CSB1 (transcription initiation factor TFIID subunit 9 OS=Momordica charantia OX=3673 GN=LOC111014303 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.5e-98
Identity = 187/209 (89.47%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 2   MSRGSGGGYDNQNTNFSPEARPSQLGEKGSKEMSEGDEELPRDAKIVKTLLKSMGVEDYE 61
           MSRG+GGGYDNQNTNFSPEARPSQLGE+GSKE++EGDE+LPRDA+IVK LLKSMGVEDYE
Sbjct: 1   MSRGTGGGYDNQNTNFSPEARPSQLGERGSKEVTEGDEDLPRDARIVKALLKSMGVEDYE 60

Query: 62  PRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVL 121
           PRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPREVL
Sbjct: 61  PRVIHQFLELWYRYVVDVLTDAQVYSEHACKAAIDCDDVKLAIQSKVNFSFSQPPPREVL 120

Query: 122 LELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKRQPVETMEETEEDEGDDAV 181
           LELARNRNKIPLPR+IGGPGIALPPD D L+SPNYQLAIPK+QPVETMEETEE+E  D  
Sbjct: 121 LELARNRNKIPLPRTIGGPGIALPPDLDALVSPNYQLAIPKKQPVETMEETEEEENVDFA 180

Query: 182 PSQEPSSEVPQQHTPQRVSFPLAKRSKIT 211
            SQEPS+EVP QHTPQRVSFPLAKR KIT
Sbjct: 181 SSQEPSTEVP-QHTPQRVSFPLAKRPKIT 208

[Close]

BLAST of Lsi02G028980 vs. ExPASy TrEMBL
Match: A0A1S4E4D8 (transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.7e-88
Identity = 173/182 (95.05%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 31  SKEMSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA 90
           SKEMS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA
Sbjct: 17  SKEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA 76

Query: 91  GKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDT 150
           GKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDT
Sbjct: 77  GKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDT 136

Query: 151 LLSPNYQLAIPKRQPVETMEETEEDEGDD-AVPSQEP-SSEVPQQHTPQRVSFPLAKRSK 210
           LLSPNYQLAIPK+Q VETMEETEEDEGDD  VPSQEP SSEVPQQH PQRVSFPLAKR K
Sbjct: 137 LLSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPK 196

[Close]

BLAST of Lsi02G028980 vs. ExPASy TrEMBL
Match: A0A0A0KAU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.8e-87
Identity = 172/179 (96.09%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 34  MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 93
           MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 94  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 153
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 154 PNYQLAIPKRQPVETMEETEEDEGDDAV-PSQEP-SSEVPQQHTPQRVSFPLAKRSKIT 211
           PNYQLAIPK+Q VETMEETEEDEGDD V PSQEP SSEVPQQH  QRVSFPLAKRSKIT
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179

[Close]

BLAST of Lsi02G028980 vs. NCBI nr
Match: XP_022953465.1 (transcription initiation factor TFIID subunit 9 [Cucurbita moschata])

HSP 1 Score: 381.7 bits (979), Expect = 4.0e-102
Identity = 192/206 (93.20%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 5   GSGGGYDNQNTNFSPEARPSQLGEKGSKEMSEGDEELPRDAKIVKTLLKSMGVEDYEPRV 64
           G GGGYDNQNTNFSPEARPSQLG++G KEMSEGDE+LPRDAKIVKTLLKSMGVEDYEPRV
Sbjct: 12  GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRV 71

Query: 65  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 124
           IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL
Sbjct: 72  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 131

Query: 125 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKRQPVETMEETEEDEGDDAVPSQ 184
           ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIP+++ VE MEETEEDEG DAVPSQ
Sbjct: 132 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDAVPSQ 191

Query: 185 EPSSEVPQQHTPQRVSFPLAKRSKIT 211
           EPS+EVPQQHTPQRVSFPL+KR KIT
Sbjct: 192 EPSTEVPQQHTPQRVSFPLSKRPKIT 217

[Close]

BLAST of Lsi02G028980 vs. NCBI nr
Match: KAG7013987.1 (Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380.2 bits (975), Expect = 1.2e-101
Identity = 195/211 (92.42%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 2   MSRGS--GGGYDNQNTNFSPEARPSQLGEKGSKEMSEGDEELPRDAKIVKTLLKSMGVED 61
           MSRGS  GGGYDNQNTNFSPEARPSQLG++G KEMSEGDE+LPRDAKIVKTLLKSMGVED
Sbjct: 1   MSRGSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVED 60

Query: 62  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE 121
           YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE
Sbjct: 61  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120

Query: 122 VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKRQPVETMEETEEDEGDD 181
           VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIP+++ VE MEETEEDEG D
Sbjct: 121 VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVD 180

Query: 182 AVPSQEPSSEVPQQHTPQRVSFPLAKRSKIT 211
           AVPSQE S+EVPQQHTPQRVSFPL+KR KIT
Sbjct: 181 AVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 211

[Close]

BLAST of Lsi02G028980 vs. NCBI nr
Match: KAG6575445.1 (Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 378.6 bits (971), Expect = 3.4e-101
Identity = 195/215 (90.70%), Postives = 203/215 (94.42%), Query Frame = 0


Query: 2   MSRGS------GGGYDNQNTNFSPEARPSQLGEKGSKEMSEGDEELPRDAKIVKTLLKSM 61
           MSRGS      GGGYDNQNTNFSPEARPSQLG++G KEMSEGDE+LPRDAKIVKTLLKSM
Sbjct: 1   MSRGSGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSM 60

Query: 62  GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQP 121
           GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQP
Sbjct: 61  GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQP 120

Query: 122 PPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKRQPVETMEETEED 181
           PPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIP+++ VE MEETEED
Sbjct: 121 PPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEED 180

Query: 182 EGDDAVPSQEPSSEVPQQHTPQRVSFPLAKRSKIT 211
           EG DAVPSQE S+EVPQQHTPQRVSFPL+KR KIT
Sbjct: 181 EGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 215

[Close]

BLAST of Lsi02G028980 vs. NCBI nr
Match: XP_022992393.1 (transcription initiation factor TFIID subunit 9 [Cucurbita maxima])

HSP 1 Score: 373.2 bits (957), Expect = 1.4e-99
Identity = 189/206 (91.75%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 5   GSGGGYDNQNTNFSPEARPSQLGEKGSKEMSEGDEELPRDAKIVKTLLKSMGVEDYEPRV 64
           G GGGYDNQNTNFSPEAR SQLG++G KEMSEGDE+LPRDA+IVKTLLKSMGVEDYEPRV
Sbjct: 8   GGGGGYDNQNTNFSPEARTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGVEDYEPRV 67

Query: 65  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 124
           IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL
Sbjct: 68  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 127

Query: 125 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKRQPVETMEETEEDEGDDAVPSQ 184
           ARNRNKIPLPRSIGGPGIALPPD DTLLSPNYQLAIPK++PVE MEETEEDEG D VPSQ
Sbjct: 128 ARNRNKIPLPRSIGGPGIALPPDIDTLLSPNYQLAIPKKRPVEAMEETEEDEGVDTVPSQ 187

Query: 185 EPSSEVPQQHTPQRVSFPLAKRSKIT 211
           E S+EVPQQHTPQRVSFPL+KR KIT
Sbjct: 188 ELSTEVPQQHTPQRVSFPLSKRPKIT 213

[Close]

BLAST of Lsi02G028980 vs. NCBI nr
Match: XP_022144675.1 (transcription initiation factor TFIID subunit 9 [Momordica charantia])

HSP 1 Score: 366.7 bits (940), Expect = 1.3e-97
Identity = 187/209 (89.47%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 2   MSRGSGGGYDNQNTNFSPEARPSQLGEKGSKEMSEGDEELPRDAKIVKTLLKSMGVEDYE 61
           MSRG+GGGYDNQNTNFSPEARPSQLGE+GSKE++EGDE+LPRDA+IVK LLKSMGVEDYE
Sbjct: 1   MSRGTGGGYDNQNTNFSPEARPSQLGERGSKEVTEGDEDLPRDARIVKALLKSMGVEDYE 60

Query: 62  PRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVL 121
           PRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPREVL
Sbjct: 61  PRVIHQFLELWYRYVVDVLTDAQVYSEHACKAAIDCDDVKLAIQSKVNFSFSQPPPREVL 120

Query: 122 LELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKRQPVETMEETEEDEGDDAV 181
           LELARNRNKIPLPR+IGGPGIALPPD D L+SPNYQLAIPK+QPVETMEETEE+E  D  
Sbjct: 121 LELARNRNKIPLPRTIGGPGIALPPDLDALVSPNYQLAIPKKQPVETMEETEEEENVDFA 180

Query: 182 PSQEPSSEVPQQHTPQRVSFPLAKRSKIT 211
            SQEPS+EVP QHTPQRVSFPLAKR KIT
Sbjct: 181 SSQEPSTEVP-QHTPQRVSFPLAKRPKIT 208

[Close]

BLAST of Lsi02G028980 vs. TAIR 10
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit )

HSP 1 Score: 255.0 bits (650), Expect = 5.3e-68
Identity = 132/181 (72.93%), Postives = 150/181 (82.87%), Query Frame = 0


Query: 36  EGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 95
           EG+E++PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 96  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 155
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 156 YQLAIPKRQPVETMEETEEDE--------GDDAVPSQEPSSEVPQQHTPQRVSFPLAKRS 209
           YQL IPK+      EETE+DE          +    Q+ +S++P Q TPQRVSFPL++R 
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQ-TPQRVSFPLSRRP 183

The following BLAST results are available for this feature:

BLAST of Lsi02G028980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYH2	7.5e-67	72.93	Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q17QQ4	7.3e-30	50.83	Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE...	[more]
Q8VI33	3.6e-29	44.17	Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9...	[more]
Q6NZA9	6.2e-29	49.60	Transcription initiation factor TFIID subunit 9B OS=Mus musculus OX=10090 GN=Taf...	[more]
Q5BKE0	1.4e-28	43.56	Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN...	[more]

BLAST of Lsi02G028980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPP8	2.0e-102	93.20	transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JZ27	6.9e-100	91.75	transcription initiation factor TFIID subunit 9 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CSB1	6.5e-98	89.47	transcription initiation factor TFIID subunit 9 OS=Momordica charantia OX=3673 G...	[more]
A0A1S4E4D8	4.7e-88	95.05	transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A0A0KAU5	8.8e-87	96.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=3 SV=1	[more]

BLAST of Lsi02G028980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953465.1	4.0e-102	93.20	transcription initiation factor TFIID subunit 9 [Cucurbita moschata]	[more]
KAG7013987.1	1.2e-101	92.42	Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. a...	[more]
KAG6575445.1	3.4e-101	90.70	Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma...	[more]
XP_022992393.1	1.4e-99	91.75	transcription initiation factor TFIID subunit 9 [Cucurbita maxima]	[more]
XP_022144675.1	1.3e-97	89.47	transcription initiation factor TFIID subunit 9 [Momordica charantia]	[more]

BLAST of Lsi02G028980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54140.1	5.3e-68	72.93	TATA binding protein associated factor 21kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 42..109 e-value: 1.3E-30 score: 107.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 42..106
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 39..158 e-value: 1.1E-46 score: 158.0
IPR003162	Transcription initiation factor TAFII31	CDD	cd07979	TAF9	coord: 42..158 e-value: 4.55525E-67 score: 199.765
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR48068	TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR	coord: 27..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G028980.1	Lsi02G028980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043966	histone H3 acetylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003713	transcription coactivator activity