Lsi02G028870 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G028870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Nucleoside diphosphate kinase
Location	chr02: 35090096 .. 35092931 (-)
RNA-Seq Expression	Lsi02G028870
Synteny	Lsi02G028870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGGCTTCGCGTCAATTCCCAGTTAGCGAGATATTCTTCCTCTCTCTCACTCTATATATACAAAATACAATACGACGCCCGCGCCCTTCGTTTCGTAGAGCTTTCTACTTTCCCGCCAATATACTGTTCTGCAACTGCAAGTACTCGAGTTTCTATCATCTTTCTTGCGGTTGCTGCTTCTCATTCTCGACTCCACTAATCGCAGGTACTTGTTTCAATCGGTTATGGAGTAAATAAAGAAATGGAGGTTATGAAACTGCAGGATTAGTTTTCGTTCTTGAAATTACTGACTAATTGTTGAAACGGATCGTATGCCTAGTTGTTGCACTGGAGTTTTTGGAGAATACCTGAGTTCGTTTAGTTGAAATCTTAAATTATCTGATGTTCTCCGCCCCGGCGGCCTCGGAATTTCTGAATCTAATTGATCTTTTCGAACTTGACGCCATTGTGATTGATATCATTGTTGTTGCAGTTTCGCTCAGCAAATGACGATCCGTTTGGTTTTGCTCGGTTCGCGGTTTCTCTTTTTCTTCTTCCTTGTCGCTGTCGCATTTTCTGGCGTGTAAGTAATGCTATAGCGTCTAGTTTCGTTTTGAAATTTTTTGATCATCTGGTTGCTTAGATATGCAATATAGGAATCTAGTATTTGTCATCAGCATCGATCACCGTACCGTTTTCGTTTGATTAGAGATCAAAGCGAAAGTTTACTTGGTACATGTTGACATCATTTTCTTGTATCTTAAGATAGAATTCGTGTTAGATGATTTAGCTAATCGGACGTGTATCCTATTGTTAATGATGGAAAAAAAATATTATGGTTGGAAAAAGATATTTAAAAGAAAAATTCTGGTTGAAAACTTCTGTTAGCTATAGATGATTCTGTTGAGCAATTTTCGGAACTGATTTATTTTATATATTTTACCTTTAAATTCAAGGACATTAAGTTCTTGTTTTGGTTGTGCTTTCTTCTCTTGAAGATTATTGTTACGCGCATCGAAATTACGTTCTCCATTTCTCCTTCTTAGCATCAATTATATTAACACCGCGATATTTGGAGCGACACTACTCTACTGTCTCAATTTACTTTGACCTATAAAACAGAATTTATTAAGAATTCAAATATTTCTTTAACAAAAATGAAAATTATAATTAAAAAAGTGAGAAGAACTAAGCATAAATTTCAAAAACAGAAAACTAAAAAAATGAAATATTTTCCTGTATTTGAAGATCTTTTTCTCTTTTACATGATTTTAGGTTTGCAAGTAATGGAGGTATGAAAATGGAGAAAACTTTTGCTATGATAAAACCAGATGGATTGCGCGGTAACTACACCGATAGAATTAAAGGGGCCATTGTGGAGTCAGGGTTCAGGATTTTGGAGGAAAGAATAGTTCAATTGGATGAAGACAGAGCAAGTCGTTTTTATGCTGAACATTCGTCAAAAAGCTTTTTTTTTAGTCTGGTCAAATACATGACAAGGTATGTGTCATCTATGAAATGTTGCTAATTTTCCTCTGCATCTGAGCTGCTTTCCTTGCATTAATTTGCTAGCCTAGTAAGTGGTGGATATCCTTGTCACTTATGCAATTTATGCAGCCTTCACACCACCACCTGCATGCACTCAAACAAAAATTTGGAAATGCTGTAATGCAAGACTACTAGTTCATGCGATGACTTTGACTATTTATCCTACTTTCTTTTCAAGCAATTTCAGTTAAAGCATTAGTAACATAGAGAAGTTCACGATACGTATCTCAAGCCTGTCAGTTATTCGTTAGTGTTCTTCTCCATCTTGAGCCATACTCTAATAGTTTAACTTAGTTGAAATAGGATTTGTGAAATCTGATTTTAAAAACAATATGGTGAACTTCTAATCTGATTTTTGTGGCCTTATGTAAATGTTTCAAACAACCATGAAATCTCTCTAGAATTGTGCGATTCTGTATTTCAGTTCTTGCACAATGGTGTTCTTCGTTTGTCTAACACTGATTATCAGTGGCCCAGTATGCATTATGGTTTTGGAGAAACAGAATGCAATCGCAGATTGGCGTGCTCTGATTGGACCAACAGATGCAGTGAAAGCTAAGGCTACGCATCCTAATAGGTCATACAAATTTTAATCTTCGTCTCTATATATACTTTACCTCCTGAAGTTTGAGACATGAATTCCGTACTGATGTCAATGCACTTGCTACCTGTTCATTCTGAGTTTTAATTATGGTCTCTTGCATGATTTCAGCATTAGGGCAATGTGTGGGTTGGATTCGCAGAAAAATTGTGTTCATGGTTCAGATTCTCTTCTATCAGCTCAAAGAGAGATCTCATTTTTCTTTGAAGAAGAAACTGGTAAAATCTATTCCCCCCCTCTCTCTATATAATGCATACTTTTGTTCTTTTATCAGTGCAATATTTTTTACTGTGACATCTATAGTGTTCACACCATCTTGTGATCTATATGGGAAAACTTATAGCTATCCTTATCCGTTAATATCATAATCCTGTAAATGAAAGTAGAGAATCCATATTGATTGATGTTGAAATAAATGTTGTACCTCTAGAATCAGAAGTTGTAAAATCTAGATAGGAGGATGGGGGTGGGGGAACAAACGAGAAGCTAGATTGTCAGCCATTCACCACAAAAAAATGCATATGTTTATATTGTGAAGATGTATATATATACTTTTTAATTATGTTTCTTACAGAAAAGGACAAAACATAACTTTTCTTTAGTTCTCCCACAAGGCACGTCTATTTCTTGGTCCTCAAAAGCGTACTTTCTTGTCTGTTACTTTACTTTTAACAGGTGAAATGGTTGGAAAACATGATGAATTATAA

mRNA sequence

TTCGGCTTCGCGTCAATTCCCAGTTAGCGAGATATTCTTCCTCTCTCTCACTCTATATATACAAAATACAATACGACGCCCGCGCCCTTCGTTTCGTAGAGCTTTCTACTTTCCCGCCAATATACTGTTCTGCAACTGCAAGTACTCGAGTTTCTATCATCTTTCTTGCGGTTGCTGCTTCTCATTCTCGACTCCACTAATCGCAGTTTCGCTCAGCAAATGACGATCCGTTTGGTTTTGCTCGGTTCGCGGTTTCTCTTTTTCTTCTTCCTTGTCGCTGTCGCATTTTCTGGCGTCCTAGTAAGTGGTGGATATCCTTGTCACTTATGCAATTTATGCAGCCTTCACACCACCACCTGCATGCACTCAAACAAAAATTTGGAAATGCTTGGCCCAGTATGCATTATGGTTTTGGAGAAACAGAATGCAATCGCAGATTGGCGTGCTCTGATTGGACCAACAGATGCAGTGAAAGCTAAGGCTACGCATCCTAATAGCATTAGGGCAATGTGTGGGTTGGATTCGCAGAAAAATTGTGTTCATGGTTCAGATTCTCTTCTATCAGCTCAAAGAGAGATCTCATTTTTCTTTGAAGAAGAAACTGGTGAAATGGTTGGAAAACATGATGAATTATAA

Coding sequence (CDS)

ATGACGATCCGTTTGGTTTTGCTCGGTTCGCGGTTTCTCTTTTTCTTCTTCCTTGTCGCTGTCGCATTTTCTGGCGTCCTAGTAAGTGGTGGATATCCTTGTCACTTATGCAATTTATGCAGCCTTCACACCACCACCTGCATGCACTCAAACAAAAATTTGGAAATGCTTGGCCCAGTATGCATTATGGTTTTGGAGAAACAGAATGCAATCGCAGATTGGCGTGCTCTGATTGGACCAACAGATGCAGTGAAAGCTAAGGCTACGCATCCTAATAGCATTAGGGCAATGTGTGGGTTGGATTCGCAGAAAAATTGTGTTCATGGTTCAGATTCTCTTCTATCAGCTCAAAGAGAGATCTCATTTTTCTTTGAAGAAGAAACTGGTGAAATGGTTGGAAAACATGATGAATTATAA

Protein sequence

MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTTTCMHSNKNLEMLGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

Homology

[Close]

BLAST of Lsi02G028870 vs. ExPASy Swiss-Prot
Match: Q6NLG3 (Probable nucleoside diphosphate kinase 5 OS=Arabidopsis thaliana OX=3702 GN=At1g17410 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 58  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQ 117
           GPV +MVLEK+NA++DWR LIGPTDA KAK +HP+SIRA+CG +SQKNCVHGSDS  SA+
Sbjct: 62  GPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCVHGSDSTSSAE 121

Query: 118 REISFFFEEETGEMVG--KHDEL 139
           REI FFF++     +   +HDEL
Sbjct: 122 REIKFFFKDVVSGDIATQQHDEL 144

[Close]

BLAST of Lsi02G028870 vs. ExPASy Swiss-Prot
Match: P56597 (Nucleoside diphosphate kinase homolog 5 OS=Homo sapiens OX=9606 GN=NME5 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.7e-12
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 58  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQ 117
           GP+  M+L +  AI+ W  L+GP +++ AK THP+S+RA+ G D  +N +HGS+   +A+
Sbjct: 77  GPLVAMILARHKAISYWLELLGPNNSLVAKETHPDSLRAIYGTDDLRNALHGSNDFAAAE 136

Query: 118 REISFFFEE 127
           REI F F E
Sbjct: 137 REIRFMFPE 145

[Close]

BLAST of Lsi02G028870 vs. ExPASy Swiss-Prot
Match: Q6DI51 (Nucleoside diphosphate kinase 6 OS=Danio rerio OX=7955 GN=nme6 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.7e-12
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 58  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQ 117
           GP+   +L +++AI  WR ++GPT   +A+ + P ++R   GL   +N  HGSDS+ SA+
Sbjct: 74  GPMRAYILAREDAITHWRTMMGPTKVFRARFSSPETLRGKYGLTDTRNTTHGSDSIESAK 133

Query: 118 REISFFFEEETGE 131
           REISFFF E + E
Sbjct: 134 REISFFFPEFSAE 146

[Close]

BLAST of Lsi02G028870 vs. ExPASy Swiss-Prot
Match: Q8N427 (Thioredoxin domain-containing protein 3 OS=Homo sapiens OX=9606 GN=NME8 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 54  LEML--GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSD 113
           LEML  GP  +M+L K NA+A+WR L+GPTD  +AK   P+SIRA  G+   KN VHG+ 
Sbjct: 510 LEMLSVGPSMVMILTKWNAVAEWRRLMGPTDPEEAKLLSPDSIRAQFGISKLKNIVHGAS 569

Query: 114 SLLSAQREISFFFEE 127
           +   A+  ++  FE+
Sbjct: 570 NAYEAKEVVNRLFED 584

[Close]

BLAST of Lsi02G028870 vs. ExPASy Swiss-Prot
Match: Q99MH5 (Nucleoside diphosphate kinase homolog 5 OS=Mus musculus OX=10090 GN=Nme5 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 58  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQ 117
           GP+  M+L +  AI+ W+ L+GP++++ AK THP+S+RA+ G D  +N +HGS+   +++
Sbjct: 77  GPLVAMILARHKAISYWKELMGPSNSLVAKETHPDSLRAIYGTDELRNALHGSNDFAASE 136

Query: 118 REISFFF 125
           REI F F
Sbjct: 137 REIRFMF 143

[Close]

BLAST of Lsi02G028870 vs. ExPASy TrEMBL
Match: A0A6J1D607 (Nucleoside diphosphate kinase OS=Momordica charantia OX=3673 GN=LOC111017349 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.1e-40
Identity = 103/182 (56.59%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 1   MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT--------------- 60
           M IRLVL+G RFLFFFFL A+AFSG   S G       L  +                  
Sbjct: 1   MAIRLVLVGPRFLFFFFLFAIAFSGAFASNGNMVTEKTLAMIKPDGLRGNYTNRIKKAIV 60

Query: 61  ----------------------TCMHSNKNL-------EMLGPVCIMVLEKQNAIADWRA 120
                                    HS++N           GPVCIMVLEKQNAIADWRA
Sbjct: 61  ESGFRILKEIIVELDEDRASRFYAEHSSRNFFSGLVKYMTSGPVCIMVLEKQNAIADWRA 120

Query: 121 LIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 139
           +IGPTDA KAKATHPNSIRAMCGLDS+KNCVHGSDSL SAQREISFFFEEETGEMVGKHD
Sbjct: 121 MIGPTDATKAKATHPNSIRAMCGLDSEKNCVHGSDSLQSAQREISFFFEEETGEMVGKHD 180

[Close]

BLAST of Lsi02G028870 vs. ExPASy TrEMBL
Match: A0A1S3CGL5 (Nucleoside diphosphate kinase OS=Cucumis melo OX=3656 GN=LOC103500680 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 105/182 (57.69%), Postives = 111/182 (60.99%), Query Frame = 0


Query: 1   MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL------------------ 60
           MTIRL+LL SRF F FF VAVAFSGV  S G       L  +                  
Sbjct: 1   MTIRLILLRSRFCFCFFFVAVAFSGVFASNGGMKMEKTLAMIKPDGLRGNYTERIKGAIV 60

Query: 61  -------------------------HTTTCMHSNKNLEML-GPVCIMVLEKQNAIADWRA 120
                                    H++     N    M  GPVCIMVLEKQNAIADWRA
Sbjct: 61  ESGFRILEERIVELDEDRASRFYAEHSSRSFFPNLVKYMTSGPVCIMVLEKQNAIADWRA 120

Query: 121 LIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 139
           LIGPTD+VKAKATHPNSIRAMCGLDS+KNCVHGSDSLLSAQREISFFFEEETGEMVG HD
Sbjct: 121 LIGPTDSVKAKATHPNSIRAMCGLDSEKNCVHGSDSLLSAQREISFFFEEETGEMVGNHD 180

[Close]

BLAST of Lsi02G028870 vs. ExPASy TrEMBL
Match: A0A0A0K9F4 (Nucleoside diphosphate kinase OS=Cucumis sativus OX=3659 GN=Csa_7G448850 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 102/182 (56.04%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 1   MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL------------------ 60
           M +RLVLL SR  F FFLVA+AFSG   S G       L  +                  
Sbjct: 1   MMVRLVLLRSRSCFCFFLVAIAFSGGFASNGGMKMEKTLAMIKPDGLRGNYTERIKGAIV 60

Query: 61  -------------------------HTTTCMHSNKNLEML-GPVCIMVLEKQNAIADWRA 120
                                    H++     N    M  GPVCIMVLEKQNAIA+WRA
Sbjct: 61  ESGFRILEERIDELDEDRASRFYAEHSSRSFFPNLVKYMTSGPVCIMVLEKQNAIAEWRA 120

Query: 121 LIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 139
           LIGPTD+VKAKATHPNSIRAMCGLDS+KNCVHGSDSLLSAQREISFFFEEETGEMVGKHD
Sbjct: 121 LIGPTDSVKAKATHPNSIRAMCGLDSEKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 180

[Close]

BLAST of Lsi02G028870 vs. ExPASy TrEMBL
Match: A0A6J1GNH4 (Nucleoside diphosphate kinase OS=Cucurbita moschata OX=3662 GN=LOC111456097 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 101/182 (55.49%), Postives = 111/182 (60.99%), Query Frame = 0


Query: 1   MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT--------------- 60
           M IRLVLLGSRFLFFF LV++AFSG+  S G       L  +                  
Sbjct: 1   MKIRLVLLGSRFLFFFVLVSIAFSGIFASNGGMETEKTLAMIKPDGLRGNYTDRIRRAIV 60

Query: 61  ----------------------TCMHSNKNL-------EMLGPVCIMVLEKQNAIADWRA 120
                                    HS+K+           GPVC+MVLEKQNAIADWRA
Sbjct: 61  ESGFRILKERVVELDEDRASRFYAEHSSKSFFPTLVKYMTSGPVCVMVLEKQNAIADWRA 120

Query: 121 LIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 139
           +IGPTDA KAKATHPNSIRAMCGLDS+KNCVHGSDSL SAQREISFFF EETGE+VGKHD
Sbjct: 121 MIGPTDATKAKATHPNSIRAMCGLDSEKNCVHGSDSLQSAQREISFFF-EETGEIVGKHD 180

[Close]

BLAST of Lsi02G028870 vs. ExPASy TrEMBL
Match: A0A6J1JTG9 (Nucleoside diphosphate kinase OS=Cucurbita maxima OX=3661 GN=LOC111488723 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.2e-37
Identity = 100/182 (54.95%), Postives = 112/182 (61.54%), Query Frame = 0


Query: 1   MTIRLVLLGSRFLFFFFLVAVAFSGV--------------------------------LV 60
           M IRLVLLGSRFLFFF LV++AFSG+                                +V
Sbjct: 1   MEIRLVLLGSRFLFFFVLVSIAFSGIFASNGGMETEKTLAMIKPDGLRGNYTDRIRRAIV 60

Query: 61  SGGYPCHLCNLCSLHTTTCM-----HSNKNL-------EMLGPVCIMVLEKQNAIADWRA 120
             G+      +  L           HS+K+           GPVC+MVLEKQNAIADWRA
Sbjct: 61  ESGFRILKDRVVELDEDRASQFYAEHSSKSFFPSLVKYMTSGPVCVMVLEKQNAIADWRA 120

Query: 121 LIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 139
           +IGPTDA KAKATHPNSIRAMCGLDS+KNCVHGSDSL SA REISFFF EETGE+VGKHD
Sbjct: 121 MIGPTDATKAKATHPNSIRAMCGLDSEKNCVHGSDSLQSAHREISFFF-EETGEIVGKHD 180

[Close]

BLAST of Lsi02G028870 vs. NCBI nr
Match: XP_022148787.1 (probable nucleoside diphosphate kinase 5 isoform X2 [Momordica charantia])

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-40
Identity = 103/182 (56.59%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 1   MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT--------------- 60
           M IRLVL+G RFLFFFFL A+AFSG   S G       L  +                  
Sbjct: 1   MAIRLVLVGPRFLFFFFLFAIAFSGAFASNGNMVTEKTLAMIKPDGLRGNYTNRIKKAIV 60

Query: 61  ----------------------TCMHSNKNL-------EMLGPVCIMVLEKQNAIADWRA 120
                                    HS++N           GPVCIMVLEKQNAIADWRA
Sbjct: 61  ESGFRILKEIIVELDEDRASRFYAEHSSRNFFSGLVKYMTSGPVCIMVLEKQNAIADWRA 120

Query: 121 LIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 139
           +IGPTDA KAKATHPNSIRAMCGLDS+KNCVHGSDSL SAQREISFFFEEETGEMVGKHD
Sbjct: 121 MIGPTDATKAKATHPNSIRAMCGLDSEKNCVHGSDSLQSAQREISFFFEEETGEMVGKHD 180

[Close]

BLAST of Lsi02G028870 vs. NCBI nr
Match: XP_008462283.1 (PREDICTED: probable nucleoside diphosphate kinase 5 isoform X1 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-39
Identity = 105/182 (57.69%), Postives = 111/182 (60.99%), Query Frame = 0


Query: 1   MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL------------------ 60
           MTIRL+LL SRF F FF VAVAFSGV  S G       L  +                  
Sbjct: 1   MTIRLILLRSRFCFCFFFVAVAFSGVFASNGGMKMEKTLAMIKPDGLRGNYTERIKGAIV 60

Query: 61  -------------------------HTTTCMHSNKNLEML-GPVCIMVLEKQNAIADWRA 120
                                    H++     N    M  GPVCIMVLEKQNAIADWRA
Sbjct: 61  ESGFRILEERIVELDEDRASRFYAEHSSRSFFPNLVKYMTSGPVCIMVLEKQNAIADWRA 120

Query: 121 LIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 139
           LIGPTD+VKAKATHPNSIRAMCGLDS+KNCVHGSDSLLSAQREISFFFEEETGEMVG HD
Sbjct: 121 LIGPTDSVKAKATHPNSIRAMCGLDSEKNCVHGSDSLLSAQREISFFFEEETGEMVGNHD 180

[Close]

BLAST of Lsi02G028870 vs. NCBI nr
Match: XP_038897366.1 (probable nucleoside diphosphate kinase 5 isoform X1 [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 7.1e-39
Identity = 106/182 (58.24%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 1   MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT--------------- 60
           MTIRLV L SRFL FFFLVA A SGV  S G       L  +                  
Sbjct: 9   MTIRLVSLSSRFLLFFFLVATASSGVFASNGGMKIERTLAMIKPDGLRGNFTDRIKGAIV 68

Query: 61  ----------------------TCMHSNKNL-------EMLGPVCIMVLEKQNAIADWRA 120
                                    HS+K+           GPVCIMVLEKQNAIADWRA
Sbjct: 69  GSGFRILEERIVELDEDRASRFYAEHSSKSFFFSLVKYMTSGPVCIMVLEKQNAIADWRA 128

Query: 121 LIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 139
           LIGPTDAVKAKATHPNSIRAMCGLDS+KNCVHGSDSLLSAQREISFFF EETGEMVGKHD
Sbjct: 129 LIGPTDAVKAKATHPNSIRAMCGLDSEKNCVHGSDSLLSAQREISFFFGEETGEMVGKHD 188

[Close]

BLAST of Lsi02G028870 vs. NCBI nr
Match: XP_038897367.1 (probable nucleoside diphosphate kinase 5 isoform X2 [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 7.1e-39
Identity = 106/182 (58.24%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 1   MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT--------------- 60
           MTIRLV L SRFL FFFLVA A SGV  S G       L  +                  
Sbjct: 1   MTIRLVSLSSRFLLFFFLVATASSGVFASNGGMKIERTLAMIKPDGLRGNFTDRIKGAIV 60

Query: 61  ----------------------TCMHSNKNL-------EMLGPVCIMVLEKQNAIADWRA 120
                                    HS+K+           GPVCIMVLEKQNAIADWRA
Sbjct: 61  GSGFRILEERIVELDEDRASRFYAEHSSKSFFFSLVKYMTSGPVCIMVLEKQNAIADWRA 120

Query: 121 LIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 139
           LIGPTDAVKAKATHPNSIRAMCGLDS+KNCVHGSDSLLSAQREISFFF EETGEMVGKHD
Sbjct: 121 LIGPTDAVKAKATHPNSIRAMCGLDSEKNCVHGSDSLLSAQREISFFFGEETGEMVGKHD 180

[Close]

BLAST of Lsi02G028870 vs. NCBI nr
Match: KAG6575435.1 (putative nucleoside diphosphate kinase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 2.3e-37
Identity = 102/182 (56.04%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL--------HTTT------ 60
           M IRLVLLGSRFLFFF LV++AFSG+  S G       L  +        +T +      
Sbjct: 740 MKIRLVLLGSRFLFFFVLVSIAFSGIFASNGGMETEKTLAMIKPDGLRGNYTDSIRRAIV 799

Query: 61  -----------------------CMHSNKNL-------EMLGPVCIMVLEKQNAIADWRA 120
                                    HS+K+           GPVC+MVLEKQNAIADWRA
Sbjct: 800 ESGFRILKERVVELDEDRASRFYAEHSSKSFFPTLVKYMTSGPVCVMVLEKQNAIADWRA 859

Query: 121 LIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHD 139
           +IGPTDA KAKATHPNSIRAMCGLDS+KNCVHGSDSL SAQREISFFF EETGE+VGKHD
Sbjct: 860 MIGPTDATKAKATHPNSIRAMCGLDSEKNCVHGSDSLQSAQREISFFF-EETGEIVGKHD 919

[Close]

BLAST of Lsi02G028870 vs. TAIR 10
Match: AT1G17410.1 (Nucleoside diphosphate kinase family protein )

HSP 1 Score: 114.0 bits (284), Expect = 9.6e-26
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 58  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQ 117
           GPV +MVLEK+NA++DWR LIGPTDA KAK +HP+SIRA+CG +SQKNCVHGSDS  SA+
Sbjct: 99  GPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCVHGSDSTSSAE 158

Query: 118 REISFFFEEETGEMVG--KHDEL 139
           REI FFF++     +   +HDEL
Sbjct: 159 REIKFFFKDVVSGDIATQQHDEL 181

[Close]

BLAST of Lsi02G028870 vs. TAIR 10
Match: AT1G17410.2 (Nucleoside diphosphate kinase family protein )

HSP 1 Score: 114.0 bits (284), Expect = 9.6e-26
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 58  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQ 117
           GPV +MVLEK+NA++DWR LIGPTDA KAK +HP+SIRA+CG +SQKNCVHGSDS  SA+
Sbjct: 62  GPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCVHGSDSTSSAE 121

Query: 118 REISFFFEEETGEMVG--KHDEL 139
           REI FFF++     +   +HDEL
Sbjct: 122 REIKFFFKDVVSGDIATQQHDEL 144

[Close]

BLAST of Lsi02G028870 vs. TAIR 10
Match: AT4G09320.1 (Nucleoside diphosphate kinase family protein )

HSP 1 Score: 52.0 bits (123), Expect = 4.5e-07
Identity = 26/69 (37.68%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 58  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQ 117
           GPV  M+ E +N +   R +IG T+     A+ P +IR    +D  +N +HGSDS+ SA+
Sbjct: 88  GPVVAMIWEGKNVVLTGRKIIGATNPA---ASEPGTIRGDFAIDIGRNVIHGSDSVESAR 147

Query: 118 REISFFFEE 127
           +EI+ +F +
Sbjct: 148 KEIALWFPD 153

[Close]

BLAST of Lsi02G028870 vs. TAIR 10
Match: AT5G63310.1 (nucleoside diphosphate kinase 2 )

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-06
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 58  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQ 117
           GPV  M  E    +A  R LIG TD ++A+   P +IR    + + +N VHGSDS  + +
Sbjct: 150 GPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVHGSDSPENGK 209

Query: 118 REISFFFEE 127
           REI  +F+E
Sbjct: 210 REIGLWFKE 215

The following BLAST results are available for this feature:

BLAST of Lsi02G028870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLG3	1.3e-24	65.06	Probable nucleoside diphosphate kinase 5 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
P56597	7.7e-12	44.93	Nucleoside diphosphate kinase homolog 5 OS=Homo sapiens OX=9606 GN=NME5 PE=1 SV=...	[more]
Q6DI51	7.7e-12	43.84	Nucleoside diphosphate kinase 6 OS=Danio rerio OX=7955 GN=nme6 PE=2 SV=1	[more]
Q8N427	1.0e-11	46.67	Thioredoxin domain-containing protein 3 OS=Homo sapiens OX=9606 GN=NME8 PE=2 SV=...	[more]
Q99MH5	1.3e-11	43.28	Nucleoside diphosphate kinase homolog 5 OS=Mus musculus OX=10090 GN=Nme5 PE=1 SV...	[more]

BLAST of Lsi02G028870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D607	4.1e-40	56.59	Nucleoside diphosphate kinase OS=Momordica charantia OX=3673 GN=LOC111017349 PE=...	[more]
A0A1S3CGL5	1.2e-39	57.69	Nucleoside diphosphate kinase OS=Cucumis melo OX=3656 GN=LOC103500680 PE=3 SV=1	[more]
A0A0A0K9F4	1.1e-37	56.04	Nucleoside diphosphate kinase OS=Cucumis sativus OX=3659 GN=Csa_7G448850 PE=3 SV...	[more]
A0A6J1GNH4	1.4e-37	55.49	Nucleoside diphosphate kinase OS=Cucurbita moschata OX=3662 GN=LOC111456097 PE=3...	[more]
A0A6J1JTG9	4.2e-37	54.95	Nucleoside diphosphate kinase OS=Cucurbita maxima OX=3661 GN=LOC111488723 PE=3 S...	[more]

BLAST of Lsi02G028870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148787.1	8.4e-40	56.59	probable nucleoside diphosphate kinase 5 isoform X2 [Momordica charantia]	[more]
XP_008462283.1	2.4e-39	57.69	PREDICTED: probable nucleoside diphosphate kinase 5 isoform X1 [Cucumis melo]	[more]
XP_038897366.1	7.1e-39	58.24	probable nucleoside diphosphate kinase 5 isoform X1 [Benincasa hispida]	[more]
XP_038897367.1	7.1e-39	58.24	probable nucleoside diphosphate kinase 5 isoform X2 [Benincasa hispida]	[more]
KAG6575435.1	2.3e-37	56.04	putative nucleoside diphosphate kinase 5, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Lsi02G028870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17410.1	9.6e-26	65.06	Nucleoside diphosphate kinase family protein	[more]
AT1G17410.2	9.6e-26	65.06	Nucleoside diphosphate kinase family protein	[more]
AT4G09320.1	4.5e-07	37.68	Nucleoside diphosphate kinase family protein	[more]
AT5G63310.1	1.7e-06	40.58	nucleoside diphosphate kinase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001564	Nucleoside diphosphate kinase	PRINTS	PR01243	NUCDPKINASE	coord: 105..124 score: 58.15 coord: 58..75 score: 42.74
IPR034907	Nucleoside diphosphate kinase-like domain	SMART	SM00562	ndk_5	coord: 18..131 e-value: 4.3E-7 score: 18.2
IPR034907	Nucleoside diphosphate kinase-like domain	PFAM	PF00334	NDK	coord: 56..127 e-value: 3.5E-21 score: 75.6
IPR036850	Nucleoside diphosphate kinase-like domain superfamily	GENE3D	3.30.70.141		coord: 38..136 e-value: 1.7E-27 score: 98.1
IPR036850	Nucleoside diphosphate kinase-like domain superfamily	SUPERFAMILY	54919	Nucleoside diphosphate kinase, NDK	coord: 33..126
None	No IPR available	PANTHER	PTHR46161	NUCLEOSIDE DIPHOSPHATE KINASE	coord: 58..137
None	No IPR available	PANTHER	PTHR46161:SF3	NUCLEOSIDE DIPHOSPHATE KINASE	coord: 58..137
IPR023005	Nucleoside diphosphate kinase, active site	PROSITE	PS00469	NDP_KINASES	coord: 105..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G028870.1	Lsi02G028870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006241	CTP biosynthetic process
biological_process	GO:0006183	GTP biosynthetic process
biological_process	GO:0006165	nucleoside diphosphate phosphorylation
biological_process	GO:0006228	UTP biosynthetic process
molecular_function	GO:0004550	nucleoside diphosphate kinase activity