Lsi02G027350 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G027350
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	39S ribosomal protein L41-A, mitochondrial-like
Location	chr02: 33636670 .. 33639528 (-)
RNA-Seq Expression	Lsi02G027350
Synteny	Lsi02G027350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAAAAAATTAATAACCTTTGTTTTTCTTTTTCTTCTCCTCTAGCTCTGGCTCTGGCTCTCTCTCTCTCTGTCTTCCTGTCCTATTCCCACTGATACTAGCCGCTGCCGCCATAGGTTCAACGATTCTGTAACCTATTCATCTCTTCCCTTCAGCGAGTTTAAATTCCACCGCCGTAGGATAACTCCGACGCCGCTTAAACCCCGCGAAGACGCACGGACCCGTCCGATAGATAACCTAGCAGAAGAAGTTTCAGAAAGCGTTCTGGTACTGTTCTTTTGTTTGATCGAGGTGATTAACTTGGGAAATGGCGTTAGGACTAATATTGGGACTTGGAAGAGCAATGCGGAGGAAGCGTACATCTTCTCTGGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTATAAGGGCAAGAATTGCAAGCCTACTGGTTTTCATACGCGTAAAGGTATCCATTCCTCTTCCACCGATCCTAATATAATTTTTAGGCTTTATGTTTATTTCATTTTGCCGAGAGAATGTTCGATTATTTAATTTAGTTGATTTCTCTGTCGAAAGTTGATTATTTGAAGAGTTAGTGCCGCTAGATCCAATTGTAAGTTAGTAAAAAGTTTTAAATCATTATTGCTTCTAGGAATGTGATGTGATTAGTAGGCTATTGAATGACTTCTAATACCAGATTTTAATATTTGTATTTTGTAAGGTTCACTACAAATTGCTGTTTATAACTGTAAAAAAATTGGTTGTTTAAAATGTGAAAATTTCTTGCAGGTGGATATGTATTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTGATTTCAAGGTATTTTTACTAGTTGTTTATTCTAAAATTTAGAACTGATATCTCCGTTTCCCACCCATTACATATCCAAGTATCATGAATATGATTGTGGAGATTACAAATTACAATAGGCTACAAGGGAAAAGGTGAACAAAAATCTGTTTTGGCTTTGTGTGCTTCCTATCGTTCTTGGGTTACGTTTTTTTTTTTATTTTCCTCCTTATATGTGGAGCGGGGAAAACGAACCTTTAGCCCCGAAGTCGAGAGTTCAAGCTTTATACCAGTTGAGCGATGCTCTTATTAGTGCTCTTGGTTTACTTTATGGGTCTCCCTCGTAAAGTTTTATTAGCTCTCCTGAATTCGGAATTCTGATCTGTATTCTTTCCTTATTTCCTTTTAATACATTGTTTCTTGTTGGGTATTCAGTGAGTGATTTCAGTGCAGAGAGCTTTTATGCTACATTTTTTTTCTGATAGCTTCCCCAATGATGCTTTTGAGTTAAATAGTTGTGGGGAAAGTAGAGTTAGGGGACTTTTGTCTGCTAAGGAAAATTGTTTTTGGCTGGTGGTAGAGCGACTAGCAGGCACCTTTACCGTTGAAGCTTACTGCCTTGTGGGGAAAGCTAGGGGACTCTTGCTTGCTAAGGAAGTTTGTTTATGGCTGGTTGTAGGGCAACTAGCTCTGGCAACTTGGCCTATGAAGCTTTGCTGCTCTTTTAAGAGTTTTGTCATAATTCTGTATAACAAGATGTGCATCAATTTGAAAAGTCAAGGACTCAAGATTGACGATTCCTAACACCTCACAGTTTCAATCCCATGCAACATTTTGGTATTTAGTTGTTCATGTATGTTTGGAAGATCAGCATGTATAAGTATGTTATTGACTGATTATAGTTCATTGTAGGTTGGCACACAGGTCATGTTTAGAGGTCAACTTGAACAGTAAAAAAACCAAAATTCATTTGATGCTACTATTCATCTGCAATTTGTGCCAATGTTACTTGAAATTTTTCTTGCAGACACAACCGTGAAATATATGGATGGTTTTATGCAGAATATATGTTTCAGTGTCTCCTACTTAGTTTGTTGTTCCCTTTCTGATTTGTGTATGCTTCACTGTGCATCATTCATTGGTCGAGTACCCACTGGAGCTTTCTTGAGTTACACCATTCTTTATGGAACTTGGTTGAGTATTCTGATTATATAGCCTGTGATGTTAGGATAAATATGGCAGGCTACTTGTTCATGAGCGTCGTGTTCTTGAAACATTCGCTGACTTTGTTCTTTTAGTATGTTGCTTCATATTTGAAGAAAACATTGTAGAGCTCCAATAGTGTCAAGTGAGTTACTTTTTATTTCGCAATCGGCTGGCATAATCACATTAACTATAGATATGTAACTTAAAGGATTGGATGTCAATCTGCTGTCTAGTTTTGCATAAGAGTATTGAATTCTGCATGAAGATATAATTTGTTCTTTGTTTGCAGCTCAAGCCTTATGTATCTCAATGTCCCATAGAAATTAAGACAAGTGACAACAACGAATCAGCTAAGTCATAAGGGAAGAGGTACGAAATCTTGTAATGTCCTGCGTTTTTTCTTCTCAAATTAATTTAATTTAGCTTCGCTACTGAGTACGTTTGTACTAACCCATCAACTTATATCTTGTAGGTAAATATGAGCATGATGATGTTGGTGACGGCGTGGAGGGGACTTGGAAGAAAAAGACCATTAGTTGCTTTTGTTGGATTCTTTTACTAGTTCAGGCTCTGGTTCATGAGTTGACAACTTCAAACAATCGACGAGAAAACAAAAACTTCCTTATTTTCACAATATATGAAACACGTTTGGTTTCAATTTAGAAACTTTAAAGTTGAATTCATAATTTGAAAGCTGACTTTGAAAATGCTGGAAAAATATAATGTGTTTGGTAAGATACATTCTTTGAGAGAAAAAAAATTATTTTTTATTAACAATCATGCTTAATACATACTTCAAATATGTATATAGTCAATATTGTACAGTTAAATGAAGCTCAG

mRNA sequence

AAAGAAAAAAAATTAATAACCTTTGTTTTTCTTTTTCTTCTCCTCTAGCTCTGGCTCTGGCTCTCTCTCTCTCTGTCTTCCTGTCCTATTCCCACTGATACTAGCCGCTGCCGCCATAGGTTCAACGATTCTGTAACCTATTCATCTCTTCCCTTCAGCGAGTTTAAATTCCACCGCCGTAGGATAACTCCGACGCCGCTTAAACCCCGCGAAGACGCACGGACCCGTCCGATAGATAACCTAGCAGAAGAAGTTTCAGAAAGCGTTCTGGTACTGTTCTTTTGTTTGATCGAGGTGATTAACTTGGGAAATGGCGTTAGGACTAATATTGGGACTTGGAAGAGCAATGCGGAGGAAGCGTACATCTTCTCTGGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTATAAGGGCAAGAATTGCAAGCCTACTGGTTTTCATACGCGTAAAGGTGGATATGTATTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTGATTTCAAGGTATTTTTACTAGTTCTCAAGCCTTATGTATCTCAATGTCCCATAGAAATTAAGACAAGTGACAACAACGAATCAGCTAAGTCATAAGGGAAGAGGTAAATATGAGCATGATGATGTTGGTGACGGCGTGGAGGGGACTTGGAAGAAAAAGACCATTAGTTGCTTTTGTTGGATTCTTTTACTAGTTCAGGCTCTGGTTCATGAGTTGACAACTTCAAACAATCGACGAGAAAACAAAAACTTCCTTATTTTCACAATATATGAAACACGTTTGGTTTCAATTTAGAAACTTTAAAGTTGAATTCATAATTTGAAAGCTGACTTTGAAAATGCTGGAAAAATATAATGTGTTTGGTAAGATACATTCTTTGAGAGAAAAAAAATTATTTTTTATTAACAATCATGCTTAATACATACTTCAAATATGTATATAGTCAATATTGTACAGTTAAATGAAGCTCAG

Coding sequence (CDS)

ATGGCGTTAGGACTAATATTGGGACTTGGAAGAGCAATGCGGAGGAAGCGTACATCTTCTCTGGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTATAAGGGCAAGAATTGCAAGCCTACTGGTTTTCATACGCGTAAAGGTGGATATGTATTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTGATTTCAAGGTATTTTTACTAGTTCTCAAGCCTTATGTATCTCAATGTCCCATAGAAATTAAGACAAGTGACAACAACGAATCAGCTAAGTCATAA

Protein sequence

MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPNYVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAKS

Homology

[Close]

BLAST of Lsi02G027350 vs. ExPASy Swiss-Prot
Match: Q6DJI4 (39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.0e-07
Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 3  LGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPNYV 62
          +GLI  + R + R      +  +SK+ P  Y KG+  K  G+ T  G +V V E +P +V
Sbjct: 1  MGLISKIARGLVRGADRMAE-CTSKQGPNSYNKGRGAKKIGYLTASGKFVKVREMVPVFV 60

Query: 63 VPDLTDFKVFLLVLKPYVS 82
          VPDLT FK     LKPYVS
Sbjct: 61 VPDLTGFK-----LKPYVS 73

[Close]

BLAST of Lsi02G027350 vs. ExPASy Swiss-Prot
Match: Q6INF3 (39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-06
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 3  LGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPNYV 62
          +GLI  + R + R      +  +SK  P  Y KG+  K  G+ T  G +V V E +P +V
Sbjct: 1  MGLITKIARGLVRGADRMAE-CTSKLGPNSYNKGRGAKKIGYLTSSGKFVKVREMVPVFV 60

Query: 63 VPDLTDFKVFLLVLKPYVS 82
          VPDLT FK     LKPYVS
Sbjct: 61 VPDLTGFK-----LKPYVS 73

[Close]

BLAST of Lsi02G027350 vs. ExPASy Swiss-Prot
Match: Q9CQN7 (39S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-06
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPNYVVPDLTDFKVFLLVLKPYVS-QC 84
          +SKR PR + K +  K TG +T    +V + E +P +VVPDLT FK     LKPYV+ + 
Sbjct: 22 TSKRGPRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFK-----LKPYVNYRA 81

Query: 85 PIEIKT 90
          P  I T
Sbjct: 82 PAGIDT 82

[Close]

BLAST of Lsi02G027350 vs. ExPASy Swiss-Prot
Match: Q5BJX1 (39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-06
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPNYVVPDLTDFKVFLLVLKPYVS-QC 84
          +SKR PR + K +  K TGF+T +  +V + E +P +VVPDLT FK     LKPYV+ + 
Sbjct: 22 TSKRGPRTFTKSRGAKKTGFYTNR-KFVQIKEMVPEFVVPDLTGFK-----LKPYVNYRA 81

Query: 85 PIEIKT 90
          P  I T
Sbjct: 82 PAGIDT 81

[Close]

BLAST of Lsi02G027350 vs. ExPASy Swiss-Prot
Match: Q8IXM3 (39S ribosomal protein L41, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL41 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.9e-05
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 25 SSKRAPRDY--YKGKNCKPTGFHTRKGGYVLVPEKLPNYVVPDLTDFKVFLLVLKPYVS 82
          +SKR PR +   KG+  K  GF T    +V + E +P +VVPDLT FK     LKPYVS
Sbjct: 22 TSKRGPRSFRGRKGRGAKGIGFLTSGWRFVQIKEMVPEFVVPDLTGFK-----LKPYVS 75

[Close]

BLAST of Lsi02G027350 vs. ExPASy TrEMBL
Match: A0A0A0KBX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.9e-42
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAKS 99
          YVVPDL+DFK     LKPYVSQCPIE+KTSDNNESAKS
Sbjct: 61 YVVPDLSDFK-----LKPYVSQCPIELKTSDNNESAKS 93

[Close]

BLAST of Lsi02G027350 vs. ExPASy TrEMBL
Match: A0A1S3CEC5 (39S ribosomal protein L41-A, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103499774 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAKS 99
          YVVPDL+DFK     LKPYVSQCPIE+ TSDN ESAKS
Sbjct: 61 YVVPDLSDFK-----LKPYVSQCPIELNTSDNTESAKS 93

[Close]

BLAST of Lsi02G027350 vs. ExPASy TrEMBL
Match: A0A6J1CNE9 (39S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013068 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 86/98 (87.76%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
          MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAKS 99
          Y+VPDLTDFK     LKPYVSQCP E+KTS+ +ESAKS
Sbjct: 61 YIVPDLTDFK-----LKPYVSQCPTEVKTSEASESAKS 93

[Close]

BLAST of Lsi02G027350 vs. ExPASy TrEMBL
Match: A0A6J1J3V5 (39S ribosomal protein L41-A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481090 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.1e-39
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
          MALGLILGL R+MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAKS 99
          YVVPDLTDFK     LKPYVSQCPIE KTS+  ES KS
Sbjct: 61 YVVPDLTDFK-----LKPYVSQCPIEAKTSEAGESTKS 93

[Close]

BLAST of Lsi02G027350 vs. ExPASy TrEMBL
Match: A0A2C9U139 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G063900 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.3e-39
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
          M LGLILG+GRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MPLGLILGIGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVIVPEKLPN 60

Query: 61 YVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAK 98
          YVVPDLTDFK     LKPYVSQCP E+KT++++E+AK
Sbjct: 61 YVVPDLTDFK-----LKPYVSQCPREVKTTESSEAAK 92

[Close]

BLAST of Lsi02G027350 vs. NCBI nr
Match: XP_038897038.1 (39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
          MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAKS 99
          YVVPDLTDFK     LKPYVSQCPIE+KTSDNNESAKS
Sbjct: 61 YVVPDLTDFK-----LKPYVSQCPIEVKTSDNNESAKS 93

[Close]

BLAST of Lsi02G027350 vs. NCBI nr
Match: XP_004135839.1 (39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >XP_031744891.1 39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >KGN45301.1 hypothetical protein Csa_015853 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAKS 99
          YVVPDL+DFK     LKPYVSQCPIE+KTSDNNESAKS
Sbjct: 61 YVVPDLSDFK-----LKPYVSQCPIELKTSDNNESAKS 93

[Close]

BLAST of Lsi02G027350 vs. NCBI nr
Match: XP_008461075.1 (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 2.7e-40
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAKS 99
          YVVPDL+DFK     LKPYVSQCPIE+ TSDN ESAKS
Sbjct: 61 YVVPDLSDFK-----LKPYVSQCPIELNTSDNTESAKS 93

[Close]

BLAST of Lsi02G027350 vs. NCBI nr
Match: XP_022143129.1 (39S ribosomal protein L41-A, mitochondrial [Momordica charantia] >XP_022143137.1 39S ribosomal protein L41-A, mitochondrial [Momordica charantia])

HSP 1 Score: 174.1 bits (440), Expect = 6.0e-40
Identity = 86/98 (87.76%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
          MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAKS 99
          Y+VPDLTDFK     LKPYVSQCP E+KTS+ +ESAKS
Sbjct: 61 YIVPDLTDFK-----LKPYVSQCPTEVKTSEASESAKS 93

[Close]

BLAST of Lsi02G027350 vs. NCBI nr
Match: XP_022982189.1 (39S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-38
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
          MALGLILGL R+MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAKS 99
          YVVPDLTDFK     LKPYVSQCPIE KTS+  ES KS
Sbjct: 61 YVVPDLTDFK-----LKPYVSQCPIEAKTSEAGESTKS 93

[Close]

BLAST of Lsi02G027350 vs. TAIR 10
Match: AT5G39800.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-36
Identity = 68/94 (72.34%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 4  GLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPNYVV 63
          GL++G+GR+ RRKR+SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYV+ P+KLPNYVV
Sbjct: 6  GLLMGIGRSFRRKRSSSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAK 98
          PDLT FK     LKPYVSQCPI++ T+++ E++K
Sbjct: 66 PDLTGFK-----LKPYVSQCPIQVNTNESTEASK 94

[Close]

BLAST of Lsi02G027350 vs. TAIR 10
Match: AT5G40080.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 147.1 bits (370), Expect = 7.3e-36
Identity = 67/94 (71.28%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 4  GLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPNYVV 63
          GL++G+GR+ RRKR SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYV+ P+KLPNYVV
Sbjct: 6  GLLMGIGRSFRRKRASSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLTDFKVFLLVLKPYVSQCPIEIKTSDNNESAK 98
          PDLT FK     LKPYVSQCP+++ T+++ E++K
Sbjct: 66 PDLTGFK-----LKPYVSQCPLQVNTNESTEASK 94

[Close]

BLAST of Lsi02G027350 vs. TAIR 10
Match: AT4G09012.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 136.7 bits (343), Expect = 9.8e-33
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 1   MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLVPEKLPN 60
           M LGL+ G+GR  RRKR SSLDILS KRAPRD+YKGKNCKP GFHTRK GYV+ P+KLPN
Sbjct: 75  MTLGLLFGIGRTFRRKRASSLDILSPKRAPRDFYKGKNCKPPGFHTRK-GYVVQPDKLPN 134

Query: 61  YVVPDLTDFKVFLLVLKPYVSQCPIEI-KTSDNNESAK 98
           YVVPDLT FK     LKPYVSQCP+++ KT+++ E++K
Sbjct: 135 YVVPDLTGFK-----LKPYVSQCPLDVNKTNESTEASK 166

The following BLAST results are available for this feature:

BLAST of Lsi02G027350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DJI4	9.0e-07	41.77	39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a...	[more]
Q6INF3	1.5e-06	41.77	39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b...	[more]
Q9CQN7	2.6e-06	43.94	39S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1...	[more]
Q5BJX1	2.6e-06	45.45	39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41...	[more]
Q8IXM3	4.9e-05	47.46	39S ribosomal protein L41, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL41 PE=1 ...	[more]

BLAST of Lsi02G027350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBX4	6.9e-42	90.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1	[more]
A0A1S3CEC5	1.3e-40	88.78	39S ribosomal protein L41-A, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CNE9	2.9e-40	87.76	39S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1J3V5	7.1e-39	86.73	39S ribosomal protein L41-A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A2C9U139	9.3e-39	84.54	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G063900 PE=3 SV=...	[more]

BLAST of Lsi02G027350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897038.1	1.3e-42	92.86	39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida]	[more]
XP_004135839.1	1.4e-41	90.82	39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >XP_031744891.1 39S...	[more]
XP_008461075.1	2.7e-40	88.78	PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo]	[more]
XP_022143129.1	6.0e-40	87.76	39S ribosomal protein L41-A, mitochondrial [Momordica charantia] >XP_022143137.1...	[more]
XP_022982189.1	1.5e-38	86.73	39S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima]	[more]

BLAST of Lsi02G027350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39800.1	3.3e-36	72.34	Mitochondrial ribosomal protein L27	[more]
AT5G40080.1	7.3e-36	71.28	Mitochondrial ribosomal protein L27	[more]
AT4G09012.1	9.8e-33	69.39	Mitochondrial ribosomal protein L27	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019189	Ribosomal protein L27/L41, mitochondrial	PFAM	PF09809	MRP-L27	coord: 24..89 e-value: 1.6E-14 score: 53.7
IPR019189	Ribosomal protein L27/L41, mitochondrial	PANTHER	PTHR21338	MITOCHONDRIAL RIBOSOMAL PROTEIN L41	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G027350.1	Lsi02G027350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome