Lsi02G026410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G026410
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMAGUK p55 subfamily member 4 like
Locationchr02: 32843107 .. 32845614 (+)
RNA-Seq ExpressionLsi02G026410
SyntenyLsi02G026410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGCTTCCAATTCATTTCTGCTTTCTGTTTCTCTCTTCAATTTCATAAACCTTCTCATCGCAATTCACTACCGAACAGCTGTGGAAGAACCCACAGTGAAACCAGATTCTCAGGTCTGGCCGGACTACGCACCATAGCCGTTCGACTCGGCGGCGGCGGCGGGAGTGGCGGATTTTGGTACTGGAGGAAAAAGAAGAGGCGGAGCCGGAGTAACACCAAAGTTAAGCATCGGTTTATGGAGCTTTGGCACAAGATGATTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGTGTTAGGGCTAGGAAAAGTGGTGAGTCTCTTATTACTCTTCCTCTTTCGGCTTTTCCTTCGAAGTTTTCCCCCCCCTTCCAAATCGGAGTTTGATTATGGCTTAATTTTTTCCAATGTGATGATCTCGACTAAATCAGTTGCTTCTGATTGATGGAATTGCTGTATTTCTGCTGACTACTTCCATTAGTTTTCTCTGGTTTCTGATATATTTTTTTCCTGAACTGTGTGCTGCAATTTGAAGAAGAATTAGTATGTAACATCATCTGCAGTTAATTTCCTGCATAAGATTATGATATGTGATTTAAGGGAAGAGATTCTTGTTTTTTATTCGTCATGAGAGGAAAATAGTGAAAGAAATTTGAAAAATATGAGAGGATCCATCTAGGTTTCTAATCCAAATTTCTTAGTCTTTTCTTTTTTTAATGCTTTTTAACCGACTTTGAATATGTTATATGATACCTTGATCTGTATGCAATGTTTATTGGACACTAATCTCAATTCCCAACCACTACGATAGAGAAAGATAGAGAGAGAGAGTTGATTCTAGAAGGCAATAAATGGCCATGTGATTATTCAACCTCTACAGTACAATAATTTAGTAGGAAAAATCACAAGAAACCCATAGGCATACATACAACCATGTACTCCAATTTCTCCCAAGTGATTCTAATTTCCCAAAATTATCACCAAATATGGACATCAAATCCCTTCAATTTAGGAATTCTGTTTTACAAACTAGGTGTCTTTATGAGTATAATTTTGTTTTTCAACTAAGATATTTATCCCATGAAGCTTCCCCGTTTGATAATGCACAAAAAAGTCCCCATTGGCATTGCAGTTGAAGACAGAATGAAAGATTAGAGCCCACTTTTAAGATTAAAAGTATTTTTTATAACAGCTTTGATTGTCCTTTTGTGATTCTTCAGAGTCATAATCCCACTTAAGACTAACAATGGCCACTAGTGCCCTTTACTTTTCGACTAGTGGTGTCCCAATTTTATTTGTTTTTGCCTTCCATTACTATTATAAACAGGAGGCCAAGAGGCGTGGCCTGGCCTTGCCGTCTCTAGACTTTTATTATTCTTATTAGTTCTGTCCAAGTTGCTTTTATTGACAATTTGACTAGCACCACAAATTTCTTCTACCCTCTTCAGTATATTCCCATCCCAATATTTGTGTATAATAGTGTGTGTATATATATATATAGAGAGAGAGAGAGAGAAAGCTCAAGTAGAATGGAATAGTTAGGTCAGCCATCATGTCCTTTTAGATGGGCTGGGCCCAAATTAGGCCCATGCAATTCTGAATTTGTTGTGTGGATGTCCCTAGAGATTTCTTATTACATGAAGTGTAGTAGAATACTCTTTAGAAAGCTAAGCTAAAGCAATTGTGTGATTTTTGCTGCTAATAGGAGCTGGACTTCTGAAGCTTCATGATGATGTAGAAACTTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTACGTCGATCGGAGTCAGAGTTGGTCGGTCACCAACCGAAACGCAAGCAGCGACCGTTTTGGAGAGTCTCTGTGTGGTCCAACCAAGCTGCTGCAGCCTCTTCTTACACTGCAACTCATGCTTGAGGCCATCCAAATCAAACACTTTGCTCTCTCTATTCAAATTCTGTGCCATCTCTTTGGTATCTTCAACTTTTTTTTTTTTTAAAGAAAAGAAATGAAACTAACAGCCAATGCTTGCAAGGCACAGAACTTTTTACCAAACTTGTTCAAAGAAATGTGAAGTCTTTGGCAGTTCATCGCTTCCACTTTGAGCAGAAAAAACACCCTTTTTGTAAGTAATAATAAAATTTTGGGTTTTGTAGCTAAGAATCGTTCCTGAGTATATTTGGATGATTTTGGGTTGGGTTCAAAAGTTTTATGAGATCACTTGTAGTTTTTCATCTCATCAAAATGAAAAATGCTTTTCAAGTGAAGAATTGAAATCCAATCATAATTTCATCCTCTTGAAATTGTAATCAATTTCTTTCTTTCTTTTTTTTTTTTTGGCTTAATCCAACCATGTAAGAGTTAAACCGTTGAAATGCTTGTGATCATTGGTAAACTTTGTTAAGATATTACAAGCATTTTATGTGAGGTTTTGCGACTGAAATATTGATATTTAAACATAATTGGCAGTTTGGCCTAAAGTCAAAAATCTAACATGAGTATAATTTAACTGTCC

mRNA sequence

AAAGCTTCCAATTCATTTCTGCTTTCTGTTTCTCTCTTCAATTTCATAAACCTTCTCATCGCAATTCACTACCGAACAGCTGTGGAAGAACCCACAGTGAAACCAGATTCTCAGGTCTGGCCGGACTACGCACCATAGCCGTTCGACTCGGCGGCGGCGGCGGGAGTGGCGGATTTTGGTACTGGAGGAAAAAGAAGAGGCGGAGCCGGAGTAACACCAAAGTTAAGCATCGGTTTATGGAGCTTTGGCACAAGATGATTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGTGTTAGGGCTAGGAAAAGTGGAGCTGGACTTCTGAAGCTTCATGATGATGTAGAAACTTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTACGTCGATCGGAGTCAGAGTTGGTCGGTCACCAACCGAAACGCAAGCAGCGACCGTTTTGGAGAGTCTCTGTGTGGTCCAACCAAGCTGCTGCAGCCTCTTCTTACACTGCAACTCATGCTTGAGGCCATCCAAATCAAACACTTTGCTCTCTCTATTCAAATTCTGTGCCATCTCTTTGGTATCTTCAACTTTTTTTTTTTTTAAAGAAAAGAAATGAAACTAACAGCCAATGCTTGCAAGGCACAGAACTTTTTACCAAACTTGTTCAAAGAAATGTGAAGTCTTTGGCAGTTCATCGCTTCCACTTTGAGCAGAAAAAACACCCTTTTTGTAAGTAATAATAAAATTTTGGGTTTTGTAGCTAAGAATCGTTCCTGAGTATATTTGGATGATTTTGGGTTGGGTTCAAAAGTTTTATGAGATCACTTGTAGTTTTTCATCTCATCAAAATGAAAAATGCTTTTCAAGTGAAGAATTGAAATCCAATCATAATTTCATCCTCTTGAAATTGTAATCAATTTCTTTCTTTCTTTTTTTTTTTTTGGCTTAATCCAACCATGTAAGAGTTAAACCGTTGAAATGCTTGTGATCATTGGTAAACTTTGTTAAGATATTACAAGCATTTTATGTGAGGTTTTGCGACTGAAATATTGATATTTAAACATAATTGGCAGTTTGGCCTAAAGTCAAAAATCTAACATGAGTATAATTTAACTGTCC

Coding sequence (CDS)

ATGGAGCTTTGGCACAAGATGATTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGTGTTAGGGCTAGGAAAAGTGGAGCTGGACTTCTGAAGCTTCATGATGATGTAGAAACTTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTACGTCGATCGGAGTCAGAGTTGGTCGGTCACCAACCGAAACGCAAGCAGCGACCGTTTTGGAGAGTCTCTGTGTGGTCCAACCAAGCTGCTGCAGCCTCTTCTTACACTGCAACTCATGCTTGA

Protein sequence

MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRPFWRVSVWSNQAAAASSYTATHA
Homology
[Close]
BLAST of Lsi02G026410 vs. ExPASy TrEMBL
Match: A0A6J1CR01 (uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013423 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.2e-45
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVSARVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRPFWRVSVWSNQAAAASSYTATHA 94
          VGHQPKRKQRPFWRVSVWSN AAAASS+TATHA
Sbjct: 61 VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 93

[Close]
BLAST of Lsi02G026410 vs. ExPASy TrEMBL
Match: A0A0A0K8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430780 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVSARVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRPFWRVSVWSNQAAAASSYTATHA 94
          V HQPKRKQRPFWRVSVWSN AAAASSYTATHA
Sbjct: 61 VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]
BLAST of Lsi02G026410 vs. ExPASy TrEMBL
Match: A0A1S4E346 (uncharacterized protein LOC107991796 OS=Cucumis melo OX=3656 GN=LOC107991796 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.1e-44
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRPFWRVSVWSNQAAAASSYTATHA 94
          V HQPKRKQRPFWRVSVWSN AAAASSYTATHA
Sbjct: 61 VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]
BLAST of Lsi02G026410 vs. ExPASy TrEMBL
Match: A0A6J1JS76 (uncharacterized protein LOC111488437 OS=Cucurbita maxima OX=3661 GN=LOC111488437 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWL VSARVRARKSGAGLLKLHDDVETCGYEDVKVMWE+LRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEILRRSESEL 60

Query: 61 VGHQPKRKQRPFWRVSVWSNQAAAASSYTATHA 94
          VGH+PKRK RPFWRVSVWSN AAAASSYTATHA
Sbjct: 61 VGHRPKRKLRPFWRVSVWSNHAAAASSYTATHA 93

[Close]
BLAST of Lsi02G026410 vs. ExPASy TrEMBL
Match: A0A5A7UWX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001420 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRPFWRVSVWSNQ---AAAASSYTATHA 94
          V HQPKRKQRPFWRVSVWSN    AAAASSYTATHA
Sbjct: 61 VSHQPKRKQRPFWRVSVWSNHAAAAAAASSYTATHA 96

[Close]
BLAST of Lsi02G026410 vs. NCBI nr
Match: XP_038900267.1 (uncharacterized protein LOC120087349 [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRPFWRVSVWSNQAAAASSYTATHA 94
          VGHQPKRKQRPFWRVSVWSN AAAASSYTATHA
Sbjct: 61 VGHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]
BLAST of Lsi02G026410 vs. NCBI nr
Match: XP_022143553.1 (uncharacterized protein LOC111013423 [Momordica charantia])

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVSARVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRPFWRVSVWSNQAAAASSYTATHA 94
          VGHQPKRKQRPFWRVSVWSN AAAASS+TATHA
Sbjct: 61 VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 93

[Close]
BLAST of Lsi02G026410 vs. NCBI nr
Match: KGN45194.1 (hypothetical protein Csa_015637 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 2.9e-44
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVSARVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRPFWRVSVWSNQAAAASSYTATHA 94
          V HQPKRKQRPFWRVSVWSN AAAASSYTATHA
Sbjct: 61 VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]
BLAST of Lsi02G026410 vs. NCBI nr
Match: XP_016902643.1 (PREDICTED: uncharacterized protein LOC107991796 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 6.4e-44
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRPFWRVSVWSNQAAAASSYTATHA 94
          V HQPKRKQRPFWRVSVWSN AAAASSYTATHA
Sbjct: 61 VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]
BLAST of Lsi02G026410 vs. NCBI nr
Match: XP_023548962.1 (uncharacterized protein LOC111807461 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWL VSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRPFWRVSVWSNQAAAASSYTATHA 94
          VGH+PKRK RPFWRVSVWSN AAAASSYTATHA
Sbjct: 61 VGHRPKRKLRPFWRVSVWSNHAAAASSYTATHA 93

[Close]
BLAST of Lsi02G026410 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 2  ELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL- 61
          E W+ M FP RR+W   + RV  R S  GLL+L  DV +C YED+ +MW +L ++E    
Sbjct: 8  EWWNTMAFPTRRIWNRFTVRVGFRHS--GLLRLEHDVSSCEYEDIHIMWNLLHKNEDLTR 67

Query: 62 --VGHQPKRKQRPFWRV 76
            +  Q +++++P W +
Sbjct: 68 VPIQQQQQQRKKPCWNL 82

The following BLAST results are available for this feature:
BLAST of Lsi02G026410 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi02G026410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CR018.2e-4596.77uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A0A0K8I71.4e-4496.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430780 PE=4 SV=1[more]
A0A1S4E3463.1e-4495.70uncharacterized protein LOC107991796 OS=Cucumis melo OX=3656 GN=LOC107991796 PE=... [more]
A0A6J1JS762.0e-4394.62uncharacterized protein LOC111488437 OS=Cucurbita maxima OX=3661 GN=LOC111488437... [more]
A0A5A7UWX21.3e-4292.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Lsi02G026410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900267.12.6e-4598.92uncharacterized protein LOC120087349 [Benincasa hispida][more]
XP_022143553.11.7e-4496.77uncharacterized protein LOC111013423 [Momordica charantia][more]
KGN45194.12.9e-4496.77hypothetical protein Csa_015637 [Cucumis sativus][more]
XP_016902643.16.4e-4495.70PREDICTED: uncharacterized protein LOC107991796 [Cucumis melo][more]
XP_023548962.11.4e-4395.70uncharacterized protein LOC111807461 [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi02G026410 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G43150.11.3e-1037.66unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33181:SF19OSJNBA0041A02.21-LIKE PROTEINcoord: 2..88
NoneNo IPR availablePANTHERPTHR33181OS01G0778500 PROTEINcoord: 2..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G026410.1Lsi02G026410.1mRNA