Lsi02G026200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G026200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ecotropic viral integration site protein
Location	chr02: 32642226 .. 32643021 (+)
RNA-Seq Expression	Lsi02G026200
Synteny	Lsi02G026200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATTTGTTTCACCCATTGTTTAACACATTGTAATTTGCAGGTGGAATCACTTACCAACCAGGAAGAAGTCGAATTGCGTACAAAGATTGAAGCCCTTGGACTTGAAGTTACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTTGATGAAGTCAGTATGGTTACCTTTATATACATTCATTGCATTTATTTATATTCAATTGTGCAAGCATTTTCATGAAGAGAGATCGGTTCTAATATCTAAAAACTATACTTTCAATTTGCCCATTTTATGCCCTCTATTCAGCTGGAAATTGCCAAGGAGTTGGATAAGCTATCTGAAAAACTAGATAATGTGGATGAAATGATTTCTTCAGCAATGGCTGCAGATCCACAGGTGCAGTCTCTGTTGAGTGATACTGCTGATATTTGGATGCCAGTGATAACTGCTTCGGCTGATGAACGGCGAAATTTTACAGCTTCAGTTGAAGAAAATTCAGAAACAAAAGAGAATTGTGCCAGTTAGAAAATTCAGAAACAAAAGGGATAAGTAATTTCAATTCTCTATCATAATTTTGTTATGTTTGATGAAGAATGTGTTCTAATGCTAGCATTTACAATGGTTGGAATGTATTTTTCCAAAGGTGCCATCTTGTCTGTAGAAATCCTTCATAATTGTCTAAAGATAAATCTTACGAAGCTTTTTTTTTTTTATTAAATTGATGTGAAGATAAATAAATATGCTAATCTGATATATGCCCTTTTCTTTTTTTCCTTCAAAAAACAATTTTTTGTTTGTATGACACTAAGTTTAC

mRNA sequence

ATGTTTATTTGTTTCACCCATTGTTTAACACATTGTAATTTGCAGGTGGAATCACTTACCAACCAGGAAGAAGTCGAATTGCGTACAAAGATTGAAGCCCTTGGACTTGAAGTTACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTTGATGAACTGGAAATTGCCAAGGAGTTGGATAAGCTATCTGAAAAACTAGATAATGTGGATGAAATGATTTCTTCAGCAATGGCTGCAGATCCACAGGTGCAGTCTCTGTTGAGTGATACTGCTGATATTTGGATGCCAGTGATAACTGCTTCGGCTGATGAACGGCGAAATTTTACAGCTTCAGTTGAAGAAAATTCAGAAACAAAAGAGAATTGTGCCAGTTAGAAAATTCAGAAACAAAAGGGATAAGTAATTTCAATTCTCTATCATAATTTTGTTATGTTTGATGAAGAATGTGTTCTAATGCTAGCATTTACAATGGTTGGAATGTATTTTTCCAAAGGTGCCATCTTGTCTGTAGAAATCCTTCATAATTGTCTAAAGATAAATCTTACGAAGCTTTTTTTTTTTTATTAAATTGATGTGAAGATAAATAAATATGCTAATCTGATATATGCCCTTTTCTTTTTTTCCTTCAAAAAACAATTTTTTGTTTGTATGACACTAAGTTTAC

Coding sequence (CDS)

ATGTTTATTTGTTTCACCCATTGTTTAACACATTGTAATTTGCAGGTGGAATCACTTACCAACCAGGAAGAAGTCGAATTGCGTACAAAGATTGAAGCCCTTGGACTTGAAGTTACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTTGATGAACTGGAAATTGCCAAGGAGTTGGATAAGCTATCTGAAAAACTAGATAATGTGGATGAAATGATTTCTTCAGCAATGGCTGCAGATCCACAGGTGCAGTCTCTGTTGAGTGATACTGCTGATATTTGGATGCCAGTGATAACTGCTTCGGCTGATGAACGGCGAAATTTTACAGCTTCAGTTGAAGAAAATTCAGAAACAAAAGAGAATTGTGCCAGTTAG

Protein sequence

MFICFTHCLTHCNLQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENCAS

Homology

[Close]

BLAST of Lsi02G026200 vs. ExPASy TrEMBL
Match: A0A6J1GPL7 (uncharacterized protein LOC111455983 OS=Cucurbita moschata OX=3662 GN=LOC111455983 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.4e-45
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 74
           QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLD+VDEMISS
Sbjct: 21  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDDVDEMISS 80

Query: 75  AMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENCAS 124
           AMAADPQVQSLLSDTADIWMPVITASADERR FTASV ENSET+ENC S
Sbjct: 81  AMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENCGS 129

[Close]

BLAST of Lsi02G026200 vs. ExPASy TrEMBL
Match: A0A0A0KBJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429570 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.3e-45
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 74
           QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS
Sbjct: 21  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 80

Query: 75  AMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENCAS 124
           AMAADPQVQSLLSDTADIWMPVITASADERRNFT SV ENSET+ NC S
Sbjct: 81  AMAADPQVQSLLSDTADIWMPVITASADERRNFTPSVGENSETEANCES 129

[Close]

BLAST of Lsi02G026200 vs. ExPASy TrEMBL
Match: A0A6J1JXP7 (uncharacterized protein LOC111488434 OS=Cucurbita maxima OX=3661 GN=LOC111488434 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.1e-44
Identity = 102/107 (95.33%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 74
           QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEI+KELDKLSEKLD+VDEMISS
Sbjct: 21  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEISKELDKLSEKLDDVDEMISS 80

Query: 75  AMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENC 122
           AMAADPQVQSLLSDTADIWMPVITASADERR FTASV ENSET+ENC
Sbjct: 81  AMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENC 127

[Close]

BLAST of Lsi02G026200 vs. ExPASy TrEMBL
Match: A0A5A7UWV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001220 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.8e-43
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 74
           QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS
Sbjct: 21  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 80

Query: 75  AMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENCAS 124
           AMA+DPQVQSLLSDTADIWMPVITASADERRNFT+SV EN ET+ N  S
Sbjct: 81  AMASDPQVQSLLSDTADIWMPVITASADERRNFTSSVGENPETEANRGS 129

[Close]

BLAST of Lsi02G026200 vs. ExPASy TrEMBL
Match: A0A1S3CEA0 (uncharacterized protein LOC103499886 OS=Cucumis melo OX=3656 GN=LOC103499886 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.8e-43
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 74
           QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS
Sbjct: 21  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 80

Query: 75  AMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENCAS 124
           AMA+DPQVQSLLSDTADIWMPVITASADERRNFT+SV EN ET+ N  S
Sbjct: 81  AMASDPQVQSLLSDTADIWMPVITASADERRNFTSSVGENPETEANRGS 129

[Close]

BLAST of Lsi02G026200 vs. NCBI nr
Match: XP_038899531.1 (uncharacterized protein LOC120086812 [Benincasa hispida])

HSP 1 Score: 194.1 bits (492), Expect = 7.0e-46
Identity = 105/109 (96.33%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 74
           QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS
Sbjct: 75  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 134

Query: 75  AMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENCAS 124
           AMAADPQVQSLLSDTADIWMPVITASADERRNFTAS+ ENSET+ENCA+
Sbjct: 135 AMAADPQVQSLLSDTADIWMPVITASADERRNFTASIGENSETEENCAN 183

[Close]

BLAST of Lsi02G026200 vs. NCBI nr
Match: XP_022953424.1 (uncharacterized protein LOC111455983 [Cucurbita moschata] >XP_023547946.1 uncharacterized protein LOC111806741 [Cucurbita pepo subsp. pepo] >KAG6575661.1 hypothetical protein SDJN03_26300, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 74
           QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLD+VDEMISS
Sbjct: 21  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDDVDEMISS 80

Query: 75  AMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENCAS 124
           AMAADPQVQSLLSDTADIWMPVITASADERR FTASV ENSET+ENC S
Sbjct: 81  AMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENCGS 129

[Close]

BLAST of Lsi02G026200 vs. NCBI nr
Match: XP_004135903.1 (uncharacterized protein LOC101220647 [Cucumis sativus] >KGN45171.1 hypothetical protein Csa_015557 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 1.7e-44
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 74
           QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS
Sbjct: 21  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 80

Query: 75  AMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENCAS 124
           AMAADPQVQSLLSDTADIWMPVITASADERRNFT SV ENSET+ NC S
Sbjct: 81  AMAADPQVQSLLSDTADIWMPVITASADERRNFTPSVGENSETEANCES 129

[Close]

BLAST of Lsi02G026200 vs. NCBI nr
Match: XP_022991943.1 (uncharacterized protein LOC111488434 [Cucurbita maxima])

HSP 1 Score: 187.2 bits (474), Expect = 8.5e-44
Identity = 102/107 (95.33%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 74
           QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEI+KELDKLSEKLD+VDEMISS
Sbjct: 21  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEISKELDKLSEKLDDVDEMISS 80

Query: 75  AMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENC 122
           AMAADPQVQSLLSDTADIWMPVITASADERR FTASV ENSET+ENC
Sbjct: 81  AMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENC 127

[Close]

BLAST of Lsi02G026200 vs. NCBI nr
Match: KAG7014211.1 (hypothetical protein SDJN02_24386 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.5 bits (467), Expect = 5.5e-43
Identity = 104/112 (92.86%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE---LEIAKELDKLSEKLDNVDEM 74
           QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   LEIAKELDKLSEKLD+VDEM
Sbjct: 21  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLLEIAKELDKLSEKLDDVDEM 80

Query: 75  ISSAMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSETKENCAS 124
           ISSAMAADPQVQSLLSDTADIWMPVITASADERR FTASV ENSET+ENC S
Sbjct: 81  ISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENCGS 132

[Close]

BLAST of Lsi02G026200 vs. TAIR 10
Match: AT2G44360.1 (unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-36
Identity = 79/102 (77.45%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 15  QVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEIAKELDKLSEKLDNVDEMISS 74
           QVESLTN EEVELR+KIEALGLEVTKVPSKS + L+E+EIAKELDKLS KLD+VDEMISS
Sbjct: 20  QVESLTNTEEVELRSKIEALGLEVTKVPSKSAQHLNEVEIAKELDKLSAKLDDVDEMISS 79

Query: 75  AMAADPQVQSLLSDTADIWMPVITASADERRNFTASVEENSE 117
           A+A+DPQVQ+LLS TAD+WMPVITA A+ER NFTAS+ ++ +
Sbjct: 80  AIASDPQVQTLLSGTADVWMPVITAGAEERLNFTASLADDDD 121

The following BLAST results are available for this feature:

BLAST of Lsi02G026200 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G026200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPL7	6.4e-45	95.41	uncharacterized protein LOC111455983 OS=Cucurbita moschata OX=3662 GN=LOC1114559...	[more]
A0A0A0KBJ8	8.3e-45	95.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429570 PE=4 SV=1	[more]
A0A6J1JXP7	4.1e-44	95.33	uncharacterized protein LOC111488434 OS=Cucurbita maxima OX=3661 GN=LOC111488434...	[more]
A0A5A7UWV6	7.8e-43	92.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEA0	7.8e-43	92.66	uncharacterized protein LOC103499886 OS=Cucumis melo OX=3656 GN=LOC103499886 PE=...	[more]

BLAST of Lsi02G026200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899531.1	7.0e-46	96.33	uncharacterized protein LOC120086812 [Benincasa hispida]	[more]
XP_022953424.1	1.3e-44	95.41	uncharacterized protein LOC111455983 [Cucurbita moschata] >XP_023547946.1 unchar...	[more]
XP_004135903.1	1.7e-44	95.41	uncharacterized protein LOC101220647 [Cucumis sativus] >KGN45171.1 hypothetical ...	[more]
XP_022991943.1	8.5e-44	95.33	uncharacterized protein LOC111488434 [Cucurbita maxima]	[more]
KAG7014211.1	5.5e-43	92.86	hypothetical protein SDJN02_24386 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi02G026200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44360.1	5.3e-36	77.45	unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 123..123
None	No IPR available	COILS	Coil	Coil	coord: 58..78
None	No IPR available	PANTHER	PTHR37727	ECOTROPIC VIRAL INTEGRATION SITE PROTEIN	coord: 6..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G026200.1	Lsi02G026200.1	mRNA