Lsi02G020410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G020410
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNACHT, LRR and PYD domains-containing protein 5 isoform X3
Locationchr02: 26490258 .. 26493445 (+)
RNA-Seq ExpressionLsi02G020410
SyntenyLsi02G020410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGTCATTGAACGACAGGCGGCAAAACAGATCTAACGATCCACAACCAGCACGATCGACACCATGCTTTGCAATAGAGAAGTTTTCAAACTCATGACATGCATTCTAAAACTCCCTTTTTTGAACCTTTGAGTTTGGTTTCTAATTTTAGGAATTTTATGCCTATTATCTAAATGTGGGCTTGGAAGCCATGCCCCTTAATTCCAGCTTCATGGGTTAAATGCCCTCAAATTATTTTAAATTGGTATTAGGCAAGTTAGATATGTTTAGATGAAGAGACCATTTAATTTGAAATTTAATATAATACTTGTTTAGATAAATTTTATAAAATACTTGGTAGGTTTCAATTAACTTCAAGAACTTTCATTTAAGCATTTTTTTTTTTTTGTATATGAATATTTATTAGATATCTTCATAAAATAAAATAGAAAATAATATATATTAAAGTGTGAGAAAATTGTTCAAAATGACCCAAATCCTAAAAACTTCTATACAAACGATCTCGTTTTTTTTAAATATGTTTTTTTGGCAAATAACTTTTCAGTCGATAAGATTTGGGTATAGTCTTTATCTGGTTCCTAGGTTTAAAAATGTTACACTTTTAATCCTTAAGTTTTGAGTTTGATTACAATTTAGCTTGTAGGTTATAGAATGTTATAATTTTACCTTTGATATTTGAGTTGTGTTTCAATTTAGTTCTTAAGTTTTAAGATTTACACTTTTAATCTAATTTTTTTTACTAAATACTCAATGTTCACTTCAACATTTGACGTTTATGTTTATTAATTAATTTAAAAGAACTATGAAATGAAGTTGTAAAATTAATTTTAATAGTGAAAAGCTAGTGACACTTAATTAATTATAATTTTTTTAAATTAGGGATTGTTTTCATATATAGCAAAATGAGCTAACTTATTTACAAATATAAGAAAATGACAAAAAGTAGTCTATCATTATTTATTAGTGGTAGATGTTGATAGGTAGACAGTGATGATATATGTTTATAAGTGATATATGATAGTAGTCTATCACTATCTATCCGTTTGAAAAAGATTTTTTTTTACTATATTTGAAAATATTTCCAATAGTTTTGTCATTTAAAATAATTATCCTTAAATTAATTAATATACATTAATACTAAAGACTGAAAATGAATATTTGGTGAAAAATTGAGGTTCAAAATATAAATTTTGGACCCATGGACTATTTTTTTAAGAGTTAAATTTTAGGGTAATTGTTATAAATAGCAAAATCGCTGTAAATATTTTCAAATATAGTAAAATGTAAGTGTCTATCACTAATAGACACTGGTAAATAATAATAGTCTATAAATGTTTATACACTGTCTTATAAGCGATATTTTTCTATATTTGTAAATAAGTTTGCTTATTTTGCTATATTTGAAAACAACCCTATATATTCTTATATTATCAGAACATCAAATATCATAAATTTGATCATATCTCTTATAAGTCTGTTTGGGGTTATACGATCACCGTTTTCATATGTTTGTATTTTATTATTTCCAACACGACGTAATTTTCACATGTAATTGGATCGAGTAGCTTCCATTTATCAACTAGTTTGTGTTTTTTTATTATAGGTTTAGAAGTGAGTCTCATGTATCAGGTGCAAAGCAATAAACAAATACTAATGATAATCAAATAAGATGCAATTTTTACACTAGCATTGATTTATTACATTTTCACTTGAATAAACGTGACCTTAACAAAAACAAATATGATCAAAAGATATGTGAACAAAACAAAATCAACCACAGTCAAGGGCAAATCTATGAAGGGGCCAGGGGGCACGTGCCCCCCTCAACCGATGACGTTTTACATATTTGTATATTAATTTTTATTAAATATTAAAAACTTTTAATATACTTAATCAATTTCGTTCAATTGTTTACCCATTATCAACAAATTGCATAGTGGCGTTGAAATGCTCGTTTTTTTTCCAATTTTAAACCTTTCATATTTCTAATTTAAAAGAATATATATAATATTTTTGAAACTAAGTCCAAAAAAATTTTATTCCATTTTAATTTTTCTCTTGTATGCATATATAAATATACAAATATTTTTGGATCTTTATAAAAATTATTTTACAAAAATTGATTGAATAGTTTTTTCTTTTATATTTTGGTGAATAATTCTATAAATATTTATAACAATTTTGTAATAGTATTACTAAATCTAAATATCATACATTAATGCATTTAAAATTACATTTATATGAAGGTTAAATTACAATATTAGTCTCTAAATTTAAAAAATTATTATTAATAAATTCCTAAACTCTTAATTTTTTTTCTGTAGGCCCTAAAAATGTGTAATAAATATATGAACTTCAATTTTATATATAATAGATTTTAAAATTATTTAAAAATTAACCATTTTATAACACAAAAAAATAATTTGTGACTAATAGAACCTTAAGTTTTAAATTTTGGTAGTTAATAAATAAATTAAATTTTTAAAAAAATGTCTCATCGTATCTATTAAGCACAAAGTTCAAAAAAAAATTGAAGGCACATAATTAAATTTAATATCTAATATTAACTTTTAAGTTTTAACATTTTCAAATGTGCAATAGACCTATCAGACGCATATTGATATTTTAGGAACTTTTTTTTAATACGATATTAAGAATTTATTAAACACAAAAATAAAAAAATTTATGAACATATTAAAATCTTTTAAAATTTAAGAGCTATATATAAATATAAATCTACACTAGACTTCTAATTCTATATACTTTGTGTCCCTCCTAACATGGAATTGTGTATCTGCCACGGTCCACAGCTACGTGATCGCGCAGTGAGAGGTATGCCGTAGCAACTACTGGTGCCATCTCCCTCCGGTAATATACCAAAATTTTAATTCCAGTTTTCATGGCGGAAGCTCCTTCGTTGATCTTTCTATGCACCGCCCTAGTCAGAGACGAGATTCTTCAAAGTAAGCATCTCCATAGTTCTTGTGCTACTAATACACTGTTCCTCCGTTATTCGTTTCTCTGCGGTGTTTTCTTAATCCGTTGTTCTTTTTTACTTTTAGGGGATGACGTTCCACCGGCTGTCTATGACCTTCCCCCTGACTTGTTGGATACTCTGGCTTTGCAGCTGCCGCCGTTGGCTTTACAGAATTTACAGTCTGGAATGTACGTTGTCCCACCCTAA

mRNA sequence

ATGGTTTTCATGGCGGAAGCTCCTTCGTTGATCTTTCTATGCACCGCCCTAGTCAGAGACGAGATTCTTCAAAGGGATGACGTTCCACCGGCTGTCTATGACCTTCCCCCTGACTTGTTGGATACTCTGGCTTTGCAGCTGCCGCCGTTGGCTTTACAGAATTTACAGTCTGGAATGTACGTTGTCCCACCCTAA

Coding sequence (CDS)

ATGGTTTTCATGGCGGAAGCTCCTTCGTTGATCTTTCTATGCACCGCCCTAGTCAGAGACGAGATTCTTCAAAGGGATGACGTTCCACCGGCTGTCTATGACCTTCCCCCTGACTTGTTGGATACTCTGGCTTTGCAGCTGCCGCCGTTGGCTTTACAGAATTTACAGTCTGGAATGTACGTTGTCCCACCCTAA

Protein sequence

MVFMAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGMYVVPP
Homology
[Close]
BLAST of Lsi02G020410 vs. ExPASy TrEMBL
Match: A0A0A0K6N3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G330380 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-20
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 4  MAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGMYVVP 63
          MAEAPSL+ LC ALVRDEILQRDDVPPA+YDLPP LLDTLAL+LPPLAL+NLQSGMYV P
Sbjct: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMYVFP 60

Query: 64 P 65
          P
Sbjct: 61 P 61

[Close]
BLAST of Lsi02G020410 vs. ExPASy TrEMBL
Match: A0A5D3C7E3 (NACHT, LRR and PYD domains-containing protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00940 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 4  MAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGMYVVP 63
          MAEAPSL+ LC AL+ DEI+QRDDVPP++YDLPPDLLDTLALQLPPLAL NLQSGMYV+P
Sbjct: 1  MAEAPSLLSLCIALITDEIVQRDDVPPSLYDLPPDLLDTLALQLPPLALHNLQSGMYVLP 60

Query: 64 P 65
          P
Sbjct: 61 P 61

[Close]
BLAST of Lsi02G020410 vs. ExPASy TrEMBL
Match: A0A6J1GQL7 (uncharacterized protein LOC111456584 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456584 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-19
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 4  MAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGM 60
          MAEAPSL+FLCTALVRDEI++RDDVPPAVYDLPPDLLD LA QLPPLALQNLQSGM
Sbjct: 1  MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 56

[Close]
BLAST of Lsi02G020410 vs. ExPASy TrEMBL
Match: A0A1S3CFT7 (uncharacterized protein LOC103500467 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500467 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 4  MAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGM 60
          MAEAPSL+ LC ALV DEI+QRDDVPPA+YDLPPDLLDTLALQLPPLAL NLQSGM
Sbjct: 1  MAEAPSLLSLCIALVTDEIVQRDDVPPALYDLPPDLLDTLALQLPPLALHNLQSGM 56

[Close]
BLAST of Lsi02G020410 vs. ExPASy TrEMBL
Match: A0A1S3CFV1 (uncharacterized protein LOC103500467 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500467 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 4  MAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGM 60
          MAEAPSL+ LC ALV DEI+QRDDVPPA+YDLPPDLLDTLALQLPPLAL NLQSGM
Sbjct: 1  MAEAPSLLSLCIALVTDEIVQRDDVPPALYDLPPDLLDTLALQLPPLALHNLQSGM 56

[Close]
BLAST of Lsi02G020410 vs. NCBI nr
Match: KAG7014586.1 (T-complex-associated testis-expressed protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.5 bits (267), Expect = 4.5e-20
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0 

Query: 2    VFMAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGM 60
            VFMAEAPSL+FLCTALVRDEI++RDDVPPAVYDLPPDLLD LA QLPPLALQNLQSGM
Sbjct: 1081 VFMAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 1138

[Close]
BLAST of Lsi02G020410 vs. NCBI nr
Match: KAG6576068.1 (CLIP-associated protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 4.5e-20
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0 

Query: 2    VFMAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGM 60
            VFMAEAPSL+FLCTALVRDEI++RDDVPPAVYDLPPDLLD LA QLPPLALQNLQSGM
Sbjct: 1113 VFMAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 1170

[Close]
BLAST of Lsi02G020410 vs. NCBI nr
Match: KAA0050632.1 (NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. makuwa] >TYK07801.1 NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 5.8e-20
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 4  MAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGMYVVP 63
          MAEAPSL+ LC AL+ DEI+QRDDVPP++YDLPPDLLDTLALQLPPLAL NLQSGMYV+P
Sbjct: 1  MAEAPSLLSLCIALITDEIVQRDDVPPSLYDLPPDLLDTLALQLPPLALHNLQSGMYVLP 60

Query: 64 P 65
          P
Sbjct: 61 P 61

[Close]
BLAST of Lsi02G020410 vs. NCBI nr
Match: XP_023549040.1 (uncharacterized protein LOC111807525 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549041.1 uncharacterized protein LOC111807525 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 4  MAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGM 60
          MAEAPSL+FLCTALVRDEI++RDDVPPAVYDLPPDLLDTLA QLPPLALQNLQSGM
Sbjct: 1  MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDTLASQLPPLALQNLQSGM 56

[Close]
BLAST of Lsi02G020410 vs. NCBI nr
Match: XP_022954282.1 (uncharacterized protein LOC111456584 isoform X1 [Cucurbita moschata] >XP_022954283.1 uncharacterized protein LOC111456584 isoform X1 [Cucurbita moschata])

HSP 1 Score: 104.0 bits (258), Expect = 4.9e-19
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 4  MAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGM 60
          MAEAPSL+FLCTALVRDEI++RDDVPPAVYDLPPDLLD LA QLPPLALQNLQSGM
Sbjct: 1  MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 56

[Close]
BLAST of Lsi02G020410 vs. TAIR 10
Match: AT2G20210.1 (RNI-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 2.1e-07
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 4  MAEAPSLIFLCTALVRDEILQRDDVPPAVYDLPPDLLDTLALQLPPLALQNLQSGM 60
          M +APSL FLC   ++ ++L+ D+  P +Y+LP +LLD +   LP LALQ  Q+ M
Sbjct: 1  MTKAPSLAFLCIQSLKIQLLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNM 56

The following BLAST results are available for this feature:
BLAST of Lsi02G020410 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi02G020410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6N32.2e-2086.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G330380 PE=4 SV=1[more]
A0A5D3C7E32.8e-2083.61NACHT, LRR and PYD domains-containing protein 5 isoform X3 OS=Cucumis melo var. ... [more]
A0A6J1GQL72.4e-1991.07uncharacterized protein LOC111456584 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A1S3CFT77.7e-1887.50uncharacterized protein LOC103500467 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CFV17.7e-1887.50uncharacterized protein LOC103500467 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Lsi02G020410 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014586.14.5e-2091.38T-complex-associated testis-expressed protein 1 [Cucurbita argyrosperma subsp. a... [more]
KAG6576068.14.5e-2091.38CLIP-associated protein, partial [Cucurbita argyrosperma subsp. sororia][more]
KAA0050632.15.8e-2083.61NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. ma... [more]
XP_023549040.11.3e-1992.86uncharacterized protein LOC111807525 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022954282.14.9e-1991.07uncharacterized protein LOC111456584 isoform X1 [Cucurbita moschata] >XP_0229542... [more]
BLAST of Lsi02G020410 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20210.12.1e-0744.64RNI-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G020410.1Lsi02G020410.1mRNA