Lsi02G017710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G017710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr02: 23502786 .. 23507237 (-)
RNA-Seq Expression	Lsi02G017710
Synteny	Lsi02G017710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTGATAAATACAAGCAAAAAAAAAAAATATATATATATATATATAGTGATGTAACTTTACTATATAGATATGAATATTATAAAAGATATTTCACACCTATTATTAATAAAGATTAGAATATCATTTTAGTCTTTATACTTTGAAAGTTCAAATTTAACCTATGTACTTTTAAATGTCAAATTTTAGTTAGTTTATTATTGATTTTTTCAAAAAAAGAAAAATAAAATTATTATCTTTTTACTGTAAATTTTGAAATGAAAATTATTATTATTATCAAACCAATTTTAGTAAAAATTAACTTCAATAAACTAAATTTAAAATTTATTGAAAGTATAAAGACTAAATTAAACCTGTGAAAATATGGATTAAAATTGAACAAAATCTAAAGCACAGGGACCAAAATAAATAGTATTTTAACTTGATATTAATTTAGTTAATTAAAATATATAATTTAACCTATTTGATTTTAGAAGAAACCAAAGATTAATTGAAACATCATGTGTAGCCTATTTGGACTCCCAAAAGATAATTTCACCTTGCTCTCCACATAGCCCAAGATCCTTTAGCCTTCTTTCTTGGTAATATTCCAATTGATCCAATTCCAGCTCCCTATCTTTGAAAATTTGGATTATTTGCTGCAATACCCTTTTCTCCCCTTCTCTTATTCCAACAGCAATCCTCAATCTTGAATCAAGATTTTCTTCTTTTAGCTTCTCATCCTGTAATTCATTGTCATTGTCAAATGAGGTGACAATAAGACATACAACTTTGTGTCTTGTCAACTAACCCATAATAATTGAAGTTTGATGATTGTGTCTATTTAGCTTCATTAACGTCAAAAACTTTAAATTGTTGTCTTTAAACTTGAATTGTGGTTCCATATAGTTTGAGGAACTTAGTAGGACGAGGAAATTCATTTATATAGGAATTATTAGGAGACAAACAACTAGAAAGTCAGGATAGAGCATCAGGGTTTTTTTTTTTATCCACAAGTGTCAGGACTAGCTTACGCACACCTCGACTAATCTCAGGAGACATCTCGTCTGACTCAACAACATTTTGGTGTAAAGAAAACTCTAGGATATTAAATCCTAGATAGGTAGCCACCATGGATTGAACCAACGACCTCTTAATCATTTATCAAGGTCATGCTCTCCTATTTACCACTAGGTCAATCCATGATGATTTAGAGCATCAAGTTTTATAAAATTCGGATCTTAATAAACTTCTCGGAGAACGCCAATTAGTTGATAATAATTCATGGATATGGCAAATGGACTCTATGATAGGTGCAGTAGATGAATGAAGATTCGATGGTTTACCTCTTCAATGGTGGTATGGTAGCCAGAAAGCGCAGCCTCACAAGCATTTCTGACCACTTGACATACAAGCTCTTCATTTGCTCGACTAACAGGCATTTCAAGATGACCCCAGACTGAGTTTCTAAACAGAGATTCTAGAAGGAATGCATCTGTGCCTCCGAGTGCTAGCAGCCGCAGGAACGGAAGCATTGCAGGCGGAAAAGGACGCTCCAAAACAATGTCAAAATAAGCAGTCTCACCAAGACCATTTGTCTCAGCAATATCTAGCTTGTCATCAAAGAAAAGGTCTGACTCTGGTATCTCTAACGTCAGTGTATATGCATTGCGCTCGGCTCTTGGCTCTATGAACCCATAGTCAAGAGCTAAGTCCGCATTGCTCTTTTTTAAGTCATATTGGATATAAACCTGTTGAACATACAGTCAAAAGTTCAAGGTAAATGCACTTTCGAAATATCACTGATCTCTTTTCTCCTGACAATCTTGGCATAAAGTATATTCTTTTAAGGCCAAATTACATTTTTAGTTCTTTATTTTTGGAAAGGAAAGGTACTATCTAGGCTGAAAATTAAGAGAAATAGACTTAGGGCCCATAATTAATTTCTATGGAACTTATACTTTAGATTTCTGTTACTCCTAATAACAAGGATGTTGGGTAAGTTTTGATTACGTGATAGTAGCAACGATGGTGAAACTTCTAAAAGCACTAACTTGAAACTATGATTGAAGCAAGGAAAAAAATGAAATTTAACCATCATTTTACTCATAAGAAGATCAAATCGAATTGTCCCCTTATCTAAATATCTTATCTCATGTTTTATTCACTACTGCAAGTAAATTCTAGTTTTGGAATAAAATCTTCAACAAGCGAAAACTCCAACCATCAGTCATGTCAGACAGGCACATAAACGTAGAAATTAGTACTTCACCTGCTCACCAGCCTTCACAGGAATTGGGGACCGGAGAGAGAATAGGATATCCCATGAGAAGAGACCTGCCGGTCCCTTAACCTCCCATGCATGTTCTTCTGAGGTTACGTTAGCACTATGGTTGGCCTGATTAATTATGAATTGTGTTTGAAGGAAGTTAAAATTTAAATTACAAAACAACTGAATTTTTTTTCTTTCATGCTAGATAATAAACCATTGAGTTATGATGTTCTTGTAAAATATAGGAAAAAGAGAACCGATCAAAAACACCTACATGGCTGAAGTCCATGATGCAAGATGTGGGTTAAATCTTTTCATGTGTTTTGATTCTTGATTGGCAATCTAGATTTTGTTTTGTGTTATAATCTTTTAGTGAAGATAGGTTTGACAAACGTGTTTTTGAAAATTGTTCCATGCTTTTAGTGTATCCATATTTTGAATTTGTAATTTTACAAGGCAAAATTATTATATTTAAAAAGATAAGAGATTTCATGTAATAAAGTTATTTATTTATTTATTTTGTGAAAATTAATAAGAACATAAATTATATTATATGGTAAAATAATAATTATACAATTTTTTTAACATAAAACATGTTTATAAATTGTAGTTTATGTTCAACCTAATATTTTATGGTAACTATAAGTAGTTTAAAGGTTTATAAATATATTATAAAACACATTTTAAACATTTGGTTAAATTGGGACTACTCAATACTTGAACCTACTACCAAACTTTATCTAAAAACATGAAATACATAAGTTTTTATTGGATCCATTGTATTCAAATCACAATTTTCAGATTGCCTAACCAATTTTAGTATGAAAGTTTAGGATCAACTCTGTAAACCAAACTAACATTGCACCTAAATTAGGTGCTGCATGTGTTGTATTCATAAAGTTTCTATAATATTGACTACTTAAAGGTTCGATGCATGCCTAATCAAGTAAGAGTTTGAGATCTAACCAAGTCCGCAAAAGGAATCAAAACAAGGTTTTGTCCTCTGAGTCGTGAAAATGCCCTTGATCTGAGTATCCCAAAAGCCCAAAAGAAGTCATCCAGTGTGACTGGAGAAGGAAATAGATCTTTGTGGCGAAGCAATATCTCTTCTTCAACCTTGAGAAATTCGGTCTTAACATATTCTTTTACATTCAAAGTCGTACTCAGAAGTTGGGTTCCTGAAAAGTTCATGAAGCAATAATGTTGTAGTCAATTATTCAATGATAATTATAGAGAACTAGAAAATCGTCTTCAAGATTAAAGCACCATACTAATTAATCTACAGACCAGAGCCAAATTTCTCCTTCCTAATCCTAAATTGTTCATAAGAAATCACACATCAAAACCCTAACACGTTTCTCCTTCCTAAAGTTGTACATTGCCGCAAAATAAACCCTAAATTAGCGTTCTAGCCTCAACCAATTTGGATTGGGAAAGCATGGTAGGTTGTTAAGAACATAAAAACCAAAGTTGAAAATAAACGAGAGACAAACCTTGGAGTTCTGCAAGCTCCTCTTCAGACCTGCACTGAAACATCAAAACAAGCACTCCATCAACTCCATAATTATGAAAAACACATTAGAACAAGGAGCAGAGCAGATTAACCCACCAAAACACAGTGGAATCCGTTTCCAGGGGAAGAATATCGAGGTATTGTCGCCAACGCGAGTCGTCCTTGAGATTTTCTCTAATCAGAAACAGAGCAACAGAAATCCATGGTTTCAATCCACTGCAGGCATTGCCAATCTCGGAATCAGCAACCGCGTCGGGATTTATCCAGAATCGTTTGGGAACCTCCAAAACGACCTCGTTCTTGGATAGATTCTTGGTGGTGGCGAGTCCAAGGCCTTCGGAGAAAATTGCAGGCTTCACGTGAGTCTTGGAGGAGACGACACCTTCCTTGCGAAGCCATTGCCAGAAAGTGTGAACGTTTGAGGGCAACGATGGGTCTAACTCTGGAGAGGCGAGGGAAGTTACAGAGAGGCGTGGCTTGGGAACGAGCAACGGCCGCTTTGGAGTGCGCGGAAAGGAAAGGAAATTAGAGGATGAAGAAGCTAAGGCCATGGCCATGGGAATTGGAATTGGAGTCGCCATTTTCGGGGGGTTTCAAGCTTCGAGTATGCCATTGGAAAAGAAGTGGATAAAAAAATTTGAAAATTATGCACACGTGGGATTCATACGTGGCCTGTATTTGTGA

mRNA sequence

ATGAAGGAGATTCTAGAAGGAATGCATCTGTGCCTCCGAGTGCTAGCAGCCGCAGGAACGGAAGCATTGCAGGCGGAAAAGGACGCTCCAAAACAATGTCAAAATAAGCAGTCTCACCAAGACCATTTGTCTCAGCAATATCTAGCTTGTCATCAAAGAAAAGGTCTGACTCTGTTTTGGAATAAAATCTTCAACAAGCGAAAACTCCAACCATCAGTCATGTCAGACAGGCACATAAACGTAGAAATTAGTACTTCACCTGCTCACCAGCCTTCACAGGAATTGGGGACCGGAGAGAGAATAGGATATCCCATGAGAAGAGACCTGCCGTTGAAAATAAACGAGAGACAAACCTTGGAGTTCTGCAAGCTCCTCTTCAGACCTGCACTGAAACATCAAAACAAGCACTCCATCAACTCCATAATTATGAAAAACACATTAGAACAAGGAGCAGAGCAGATTAACCCACCAAAACACAGTGGAATCCGTTTCCAGGGGAAGAATATCGAGGTATTGTCGCCAACGCGAGTCGTCCTTGAGATTTTCTCTAATCAGAAACAGAGCAACAGAAATCCATGGTTTCAATCCACTGCAGGCATTGCCAATCTCGGAATCAGCAACCGCGTCGGGATTTATCCAGAATCGTTTGGGAACCTCCAAAACGACCTCATTCTTGGTGGTGGCGAGTCCAAGGCCTTCGGAGAAAATTGCAGGCTTCACGTGAGTCTTGGAGGAGACGACACCTTCCTTGCGAAGCCATTGCCAGAAAGTGTGAACGGCAACGATGGGTCTAACTCTGGAGAGGCGAGGGAAGTTACAGAGAGGCGTGGCTTGGGAACGAGCAACGGCCGCTTTGGAGTGCGCGGAAAGGAAAGGAAATTAGAGGATGAAGAAGCTAAGGCCATGGCCATGGGAATTGGAATTGGAGTCGCCATTTTCGGGGGGTTTCAAGCTTCGAGTATGCCATTGGAAAAGAAGTGGATAAAAAAATTTGAAAATTATGCACACGTGGGATTCATACGTGGCCTGTATTTGTGA

Coding sequence (CDS)

ATGAAGGAGATTCTAGAAGGAATGCATCTGTGCCTCCGAGTGCTAGCAGCCGCAGGAACGGAAGCATTGCAGGCGGAAAAGGACGCTCCAAAACAATGTCAAAATAAGCAGTCTCACCAAGACCATTTGTCTCAGCAATATCTAGCTTGTCATCAAAGAAAAGGTCTGACTCTGTTTTGGAATAAAATCTTCAACAAGCGAAAACTCCAACCATCAGTCATGTCAGACAGGCACATAAACGTAGAAATTAGTACTTCACCTGCTCACCAGCCTTCACAGGAATTGGGGACCGGAGAGAGAATAGGATATCCCATGAGAAGAGACCTGCCGTTGAAAATAAACGAGAGACAAACCTTGGAGTTCTGCAAGCTCCTCTTCAGACCTGCACTGAAACATCAAAACAAGCACTCCATCAACTCCATAATTATGAAAAACACATTAGAACAAGGAGCAGAGCAGATTAACCCACCAAAACACAGTGGAATCCGTTTCCAGGGGAAGAATATCGAGGTATTGTCGCCAACGCGAGTCGTCCTTGAGATTTTCTCTAATCAGAAACAGAGCAACAGAAATCCATGGTTTCAATCCACTGCAGGCATTGCCAATCTCGGAATCAGCAACCGCGTCGGGATTTATCCAGAATCGTTTGGGAACCTCCAAAACGACCTCATTCTTGGTGGTGGCGAGTCCAAGGCCTTCGGAGAAAATTGCAGGCTTCACGTGAGTCTTGGAGGAGACGACACCTTCCTTGCGAAGCCATTGCCAGAAAGTGTGAACGGCAACGATGGGTCTAACTCTGGAGAGGCGAGGGAAGTTACAGAGAGGCGTGGCTTGGGAACGAGCAACGGCCGCTTTGGAGTGCGCGGAAAGGAAAGGAAATTAGAGGATGAAGAAGCTAAGGCCATGGCCATGGGAATTGGAATTGGAGTCGCCATTTTCGGGGGGTTTCAAGCTTCGAGTATGCCATTGGAAAAGAAGTGGATAAAAAAATTTGAAAATTATGCACACGTGGGATTCATACGTGGCCTGTATTTGTGA

Protein sequence

MKEILEGMHLCLRVLAAAGTEALQAEKDAPKQCQNKQSHQDHLSQQYLACHQRKGLTLFWNKIFNKRKLQPSVMSDRHINVEISTSPAHQPSQELGTGERIGYPMRRDLPLKINERQTLEFCKLLFRPALKHQNKHSINSIIMKNTLEQGAEQINPPKHSGIRFQGKNIEVLSPTRVVLEIFSNQKQSNRNPWFQSTAGIANLGISNRVGIYPESFGNLQNDLILGGGESKAFGENCRLHVSLGGDDTFLAKPLPESVNGNDGSNSGEAREVTERRGLGTSNGRFGVRGKERKLEDEEAKAMAMGIGIGVAIFGGFQASSMPLEKKWIKKFENYAHVGFIRGLYL

Homology

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BLAST of Lsi02G017710 vs. NCBI nr
Match: KAF7828026.1 (rhamnogalacturonan I rhamnosyltransferase 1-like [Senna tora])

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-18
Identity = 57/120 (47.50%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 145 NTLEQGAEQINPPKHSGIRFQGKNIEVLSPTRVVLEIFSNQKQSNRNPWFQSTAGIANLG 204
           N+  Q  +   PP +SGI    KN EV+ P R+V    S+Q+QS+R+P FQS AGI N G
Sbjct: 537 NSQNQHKKMEGPPIYSGIGDLWKNSEVMLPHRLVPPPLSDQEQSDRHPGFQSAAGIPNFG 596

Query: 205 ISNRVGIYPESFGNLQNDLILG----GGESKAFGENCRLHVSLGGDDTFLAKPLPESVNG 261
             NRVG+ P+  G+LQNDL+ G    G E++A   +  L   LG DD F+ KPLPE VNG
Sbjct: 597 SCNRVGVDPQPLGHLQNDLVSGDVFLGDEAEALRHDSGLDGRLGRDDAFVGKPLPEGVNG 656

The following BLAST results are available for this feature:

BLAST of Lsi02G017710 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G017710 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G017710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7828026.1	2.0e-18	47.50	rhamnogalacturonan I rhamnosyltransferase 1-like [Senna tora]	[more]

BLAST of Lsi02G017710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G017710.1	Lsi02G017710.1	mRNA