Lsi02G016110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G016110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Mitochondrial inner membrane protease ATP23
Location	chr02: 21997904 .. 22000365 (-)
RNA-Seq Expression	Lsi02G016110
Synteny	Lsi02G016110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTGTAGATAGGCTGCTGGCGGCGACCGCCGAGAAATTGAAACTAGAGACTAAAACATGGCAGAAGAATCCACCCCGGAACCTGGATCAAATCGCTCGTATTCTGCCGTCAACGGTGGCCGGACTAAGGAGGAATGCGAGGATATGATTCGAAGAAGTTTCCGAAGTATGAACTACAACCAAACTGTTTCCTGTTCATTTGTCTCCTCAAAAATTGGGACCCCCCCCACAAATTTTCGGGGTTTAGGGTTTTACGACTTTCGTTAATTTGCTGAGAATTAGAAAATTAGAACTTCCTTTCGTTTTCTCATGGGTCACTGAATTTATTTCTGCGTCTCTCAGCTCCGATGGTGAAATTCTTGATGGAGCATTTGGAGAAATCTGGATGTGGGATTGGGGATAGGTTTATTAAGGCTGTTCATTGCGATAAGCAGATCAGTGGTGGTTATGTTCGTGGTGAAGGGGTAACTCTCATTTTACTTTCCTCTCTTTGTTTCTGCATCTGGTTTACATGAATATTTGGATTCTTACATTATCACTGAGAATGAATAAACAAAATTTTCAGCGTTAGAAAAGGAATTGAGAGGAAGAGACTGTTGAAGACTGATTTCTTTGTTGTGCCCTGTTTTTTGCTTGTAGATAATGGTGTGTAGTAATCACATGAACATTCAAGATGAGGTGAACCAAGTAGTAATACATGAGCTTATTCATGCTTTTGATGATTGTCGTGCGGCAAACTTGGATTGGGCTAATTGTGCTCATCATGCTTGCAGTGAGGTATGCATTTGCAATCAGCCATTTTCTTTCCCAGGTTTAGTTTCATATTCCAGAGGTTTACATTCTTTTGTTTCGGCCTCTTATTTTCATTCTGGAGCTTTTCTAACATATATATTTGGAATTTAGATTCGTGCTGGACATTTAAGTGGTGATTGCCACTATAAACGAGAACTACTGCGAGGTTTCATGAAATTACGAGGCCATGAGCAAGTATGATTTTCTGTCACTTCCTTTTTGGAAAGAACACAGTAGTCTTACCTCTTGTTGGCATCTAGAAATGAGCATAAGTTTCTAGGCAATGATATTTCAAATTTGAGTTCTTTGACACTGTGCATAGCCTCTTGCTTAAATAGGTGTACAACATCCATGAAGTATGCTTAGAGTAGTAGTAAATGTATTCTCGGTGGAAGGACTAATGAACACGAATCACCTGAAAGTTGTACATTTTCTGTACTTTTTGAGTTTTGACATGAGATAGTTTCTTTGCACTCTGCTGATAGATAAGTTACATAGTTACATTTCTCAAGTCTATGTGTTGCATTAAAGAACTTTTCTCATGGTATAACTTAAAATCTGTGTGTACGCTCATGCTAACTTGAATCTGTACTTGGCAATGAATATAATTTTATAAATGTTTCAGACATTTTTATCGTTTAACTTTTGTCTCGTTCAATGATATTTATATGCTCAAGTATTCGCTTTTCCCTCAGCCCTTGGCTTTAGCTTAAATAAGAGCAATGAGAATAAAAGTCCATTTTATTTTTTTTGATAGGAAACGATTTCATTGATAGAGAATAGAAGTTCTTCATGAAAGAAACATAATATTAGCAGAACATTTTAGGAAGACTTATCTAGAAGCCATGTGTATCAGGTTCATTTCTGTTTTTCCTTGCTGGCTAATATTTGGAGGAAATCTAGGTTTATACAAACCCTGAAATTAGGGGTGCAATTGGGGAAGCTATTATAAGTCGTCTCAGCTATATGTAGGAGAGGATATAATTAACAAGGGCGATGCACCAGTGACGTAACAATGTGTAGATGTGTGATGAGATTCAATTCAGCATTTCTTATCCTTTCTTCCAACAATATTATTACCCAGCTCCCCTGCTCTCTCATTTTTTTTTTTCTTCATCCATGAACATTAGATGAAGTACATTCTGTTGAGCTCTTTTTGATAGATTTCCATTCACTCTTTTTCTTTTTTAAAAAAATTTCTGAAGGAGTGTGTGAGAAGAAGAGTGATGAAATCAGTGATTGCTAATCCTTACTGCTCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTCTGGGACGTTTGTTACAATGATACACAGCCATTTGATAGAGCTCCCTGAAACTTGGATTATGGTCATTTCATCTGCAGAGAACAAAGCAGCCACTGCTCCTAATTTAATGGTGCTGTGCCAAAAAGAGCAACAGGTTTTCTTCCCGAGTTTTGGATTGCATAAATTTTTTAGAGAATTCATTGCCTTGAGCGGTTCGATCAATGATTTTATTCCAATATAGACATTCCCATTTTTGTTGCTTCTGATCCAATACCCATTTATACTAGATAAACTTATTGAAGCAAATACTTCTGATTTTATTCCAATATAGACATTCCTATGTATACTTAGTTCATGTTGTTGAAGCAAATAAAACAAGATTTAGCTTCTCTTTTAAA

mRNA sequence

CACTTGTAGATAGGCTGCTGGCGGCGACCGCCGAGAAATTGAAACTAGAGACTAAAACATGGCAGAAGAATCCACCCCGGAACCTGGATCAAATCGCTCGTATTCTGCCGTCAACGGTGGCCGGACTAAGGAGGAATGCGAGGATATGATTCGAAGAAGTTTCCGAACTCCGATGGTGAAATTCTTGATGGAGCATTTGGAGAAATCTGGATGTGGGATTGGGGATAGGTTTATTAAGGCTGTTCATTGCGATAAGCAGATCAGTGGTGGTTATGTTCGTGGTGAAGGGATAATGGTGTGTAGTAATCACATGAACATTCAAGATGAGGTGAACCAAGTAGTAATACATGAGCTTATTCATGCTTTTGATGATTGTCGTGCGGCAAACTTGGATTGGGCTAATTGTGCTCATCATGCTTGCAGTGAGATTCGTGCTGGACATTTAAGTGGTGATTGCCACTATAAACGAGAACTACTGCGAGGTTTCATGAAATTACGAGGCCATGAGCAAGAGTGTGTGAGAAGAAGAGTGATGAAATCAGTGATTGCTAATCCTTACTGCTCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTCTGGGACGTTTGTTACAATGATACACAGCCATTTGATAGAGCTCCCTGAAACTTGGATTATGGTCATTTCATCTGCAGAGAACAAAGCAGCCACTGCTCCTAATTTAATGGTGCTGTGCCAAAAAGAGCAACAGGTTTTCTTCCCGAGTTTTGGATTGCATAAATTTTTTAGAGAATTCATTGCCTTGAGCGGTTCGATCAATGATTTTATTCCAATATAGACATTCCCATTTTTGTTGCTTCTGATCCAATACCCATTTATACTAGATAAACTTATTGAAGCAAATACTTCTGATTTTATTCCAATATAGACATTCCTATGTATACTTAGTTCATGTTGTTGAAGCAAATAAAACAAGATTTAGCTTCTCTTTTAAA

Coding sequence (CDS)

ATGGCAGAAGAATCCACCCCGGAACCTGGATCAAATCGCTCGTATTCTGCCGTCAACGGTGGCCGGACTAAGGAGGAATGCGAGGATATGATTCGAAGAAGTTTCCGAACTCCGATGGTGAAATTCTTGATGGAGCATTTGGAGAAATCTGGATGTGGGATTGGGGATAGGTTTATTAAGGCTGTTCATTGCGATAAGCAGATCAGTGGTGGTTATGTTCGTGGTGAAGGGATAATGGTGTGTAGTAATCACATGAACATTCAAGATGAGGTGAACCAAGTAGTAATACATGAGCTTATTCATGCTTTTGATGATTGTCGTGCGGCAAACTTGGATTGGGCTAATTGTGCTCATCATGCTTGCAGTGAGATTCGTGCTGGACATTTAAGTGGTGATTGCCACTATAAACGAGAACTACTGCGAGGTTTCATGAAATTACGAGGCCATGAGCAAGAGTGTGTGAGAAGAAGAGTGATGAAATCAGTGATTGCTAATCCTTACTGCTCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTCTGGGACGTTTGTTACAATGATACACAGCCATTTGATAGAGCTCCCTGA

Protein sequence

MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIKAVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHACSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP

Homology

[Close]

BLAST of Lsi02G016110 vs. ExPASy Swiss-Prot
Match: P0CQ26 (Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=ATP23 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.5e-34
Identity = 70/170 (41.18%), Postives = 101/170 (59.41%), Query Frame = 0


Query: 25  EECEDMIRRSFR-TPMVKFLMEHLEKSGCGIGDRFIKAVHCDKQISGGYVRGEGIMVCSN 84
           ++CE   R     +PM+ FL+ HL+ +GC      ++   C +  +GG+    GI++C +
Sbjct: 56  DKCEGWKRDLMNYSPMITFLLNHLKLAGCPFPSSAMQCHPCPENRAGGFSPDHGILLCQD 115

Query: 85  HMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHACSEIRAGHLSGDCHYKRELLRGF 144
               +  +   + HEL+HAFD CR   +DW N  HHACSEIRA +LSGDC + RE+ RGF
Sbjct: 116 RFFNKKHMEDTLAHELVHAFDHCR-FKVDWGNLRHHACSEIRAANLSGDCRFTREVKRGF 175

Query: 145 MKLRGHEQECVRRRVMKSVIANPYC-SEAAAKDAMEAVWDVCYNDTQPFD 193
                  Q CV+RR + SV+ANP C S   A+ A+  VW+ C+ DT+PFD
Sbjct: 176 YAFNKQHQACVKRRAILSVLANPACTSPEMAEKAVNEVWESCFTDTRPFD 224

[Close]

BLAST of Lsi02G016110 vs. ExPASy Swiss-Prot
Match: P0CQ27 (Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=ATP23 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.9e-34
Identity = 70/170 (41.18%), Postives = 101/170 (59.41%), Query Frame = 0


Query: 25  EECEDMIRRSFR-TPMVKFLMEHLEKSGCGIGDRFIKAVHCDKQISGGYVRGEGIMVCSN 84
           ++CE   R     +PM+ FL+ HL+ +GC      ++   C +  +GG+    GI++C +
Sbjct: 56  DKCEGWKRDLMNYSPMITFLLNHLKLAGCPFPSSAMQCHPCPENRAGGFSPDHGILLCQD 115

Query: 85  HMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHACSEIRAGHLSGDCHYKRELLRGF 144
               +  +   + HEL+HAFD CR   +DW N  HHACSEIRA +LSGDC + RE+ RGF
Sbjct: 116 RFFNKKHMEDTLAHELVHAFDHCR-FKVDWGNLRHHACSEIRAANLSGDCRFTREVKRGF 175

Query: 145 MKLRGHEQECVRRRVMKSVIANPYC-SEAAAKDAMEAVWDVCYNDTQPFD 193
                  Q CV+RR + SV+ANP C S   A+ A+  VW+ C+ DT+PFD
Sbjct: 176 YAFNKQHQACVKRRAILSVLANPACTSPEMAERAVNEVWESCFTDTRPFD 224

[Close]

BLAST of Lsi02G016110 vs. ExPASy Swiss-Prot
Match: Q7T0P7 (Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus laevis OX=8355 GN=atp23 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.2e-32
Identity = 74/174 (42.53%), Postives = 109/174 (62.64%), Query Frame = 0


Query: 26  ECEDMIRRSFRT-PMVKFLMEHLEKSGCGI-GDRFIKAVHCDKQISGGY-VRGEGIMVCS 85
           +C+ M++ +  T P  K L++ +++SGC +  DR      CD  +SGG+      I++C 
Sbjct: 40  KCQLMLKIALDTSPYAKLLLDAMKQSGCTVYKDRHFSCEECDGSVSGGFDAATSEIVLCQ 99

Query: 86  NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHH-ACSEIRAGHLSGDCHYKRELLR 145
           N+++ Q  +N+VV HELIHAFD CR A++DW N   H ACSEIRA +LSGDC    EL R
Sbjct: 100 NNIHQQSHMNRVVTHELIHAFDHCR-AHVDWFNNVRHLACSEIRAANLSGDCTLANELTR 159

Query: 146 GFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 196
               ++GH Q CVR R ++S++A    S   A+ A++ V+D C+ND +PF R P
Sbjct: 160 FKFGVKGHHQVCVRDRALRSILAVRNISRETAEKAVDEVFDSCFNDHEPFGRIP 212

[Close]

BLAST of Lsi02G016110 vs. ExPASy Swiss-Prot
Match: Q6C253 (Mitochondrial inner membrane protease ATP23 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ATP23 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.2e-32
Identity = 68/159 (42.77%), Postives = 97/159 (61.01%), Query Frame = 0


Query: 37  TPMVKFLMEHLEKSGCGIGDRFIKAVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVI 96
           +P V+F+ + +EK G  I    +   HCD   +GG+    GI+VC NH+  +  +   + 
Sbjct: 90  SPTVRFMKDQIEKIGGDISSNNVFCDHCDDFKAGGFHPKYGILVCQNHVKSRSHLEDTLA 149

Query: 97  HELIHAFDDCRAANLDWANCAHHACSEIRAGHLSGDCHYKRELLRGFMK--LRGHEQECV 156
           HE++H +D+ +   +DW N  HHACSEIRA  LSG+C    EL++G +    RGH QEC 
Sbjct: 150 HEMVHYYDNTK-FKVDWMNLKHHACSEIRASTLSGECRMMNELMKGKLARLTRGH-QECA 209

Query: 157 RRRVMKSVIANPYC-SEAAAKDAMEAVWDVCYNDTQPFD 193
           +RR + SV+ANP C  EA A   +  VWD C+NDT+PFD
Sbjct: 210 KRRAILSVMANPGCKDEAQATQVVNEVWDSCFNDTRPFD 246

[Close]

BLAST of Lsi02G016110 vs. ExPASy Swiss-Prot
Match: A4IGF3 (Mitochondrial inner membrane protease ATP23 homolog OS=Danio rerio OX=7955 GN=atp23 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.6e-31
Identity = 81/195 (41.54%), Postives = 112/195 (57.44%), Query Frame = 0


Query: 7   PEPGSNRSYSAVNGG--RTKEECEDMIRRSFRT-PMVKFLMEHLEKSGCGI-GDRFIKAV 66
           PE GS    S V       K +C+ M++ +  T P  K L+  ++ SGC +  DR     
Sbjct: 38  PERGSRLKKSTVEESLFTFKHKCQLMLQFAMDTSPYAKLLLGAMKSSGCTVFKDRHFSCE 97

Query: 67  HCDKQISGGY-VRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDW-ANCAHHA 126
            CD  +SGG+      I++C N+++ Q  +N+VV HELIHAFD CR A +DW +N  H A
Sbjct: 98  DCDGTVSGGFDAATSQIVLCQNNIHQQAHMNRVVTHELIHAFDHCR-AQVDWFSNYRHLA 157

Query: 127 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 186
           CSEIRA +LSGDC +  E  R    LR H QECVR R ++S++A    S   A+  ++ V
Sbjct: 158 CSEIRAANLSGDCSFINEFSRFNFGLRKHHQECVRGRALRSILAVRRVSREEAERVVDEV 217

Query: 187 WDVCYNDTQPFDRAP 196
           +D C+ND  PF R P
Sbjct: 218 FDSCFNDHAPFGRIP 231

[Close]

BLAST of Lsi02G016110 vs. ExPASy TrEMBL
Match: A0A6J1BVA8 (Mitochondrial inner membrane protease ATP23 OS=Momordica charantia OX=3673 GN=LOC111006067 PE=3 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 4.5e-109
Identity = 188/195 (96.41%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEES PEPGSNRSYSA+NGGRTKEECEDMIRRS RTPMVKFL+EHLEKSGCGIGD+FIK
Sbjct: 1   MAEESAPEPGSNRSYSAINGGRTKEECEDMIRRSLRTPMVKFLLEHLEKSGCGIGDKFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRG++KLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGYVKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Lsi02G016110 vs. ExPASy TrEMBL
Match: A0A0A0KSC7 (Mitochondrial inner membrane protease ATP23 OS=Cucumis sativus OX=3659 GN=Csa_5G517840 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 5.8e-109
Identity = 188/195 (96.41%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNRSYS+VNGGRTKEECEDMIRRS RTPMVKFLMEHLEKSGCGIGDRFIK
Sbjct: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHC+KQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANC HHA
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKS++ANPYC EAAAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANPYCPEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Lsi02G016110 vs. ExPASy TrEMBL
Match: A0A6J1JUV4 (Mitochondrial inner membrane protease ATP23 OS=Cucurbita maxima OX=3661 GN=LOC111487709 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.7e-108
Identity = 188/195 (96.41%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNR YSAVNGGRTKEECEDMIRRS RTPMVKFLMEHLEKSGCGIGD+FIK
Sbjct: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVC NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRGF+KLRGHEQECVRRRVMKSVIANPYCSEAAA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Lsi02G016110 vs. ExPASy TrEMBL
Match: A0A6J1E2T7 (Mitochondrial inner membrane protease ATP23 OS=Cucurbita moschata OX=3662 GN=LOC111430307 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.7e-108
Identity = 188/195 (96.41%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNR YSAVNGGRTKEECEDMIRRS RTPMVKFLMEHLEKSGCGIGD+FIK
Sbjct: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVC NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRGF+KLRGHEQECVRRRVMKSVIANPYCSEAAA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Lsi02G016110 vs. ExPASy TrEMBL
Match: A0A5D3CBI5 (Mitochondrial inner membrane protease ATP23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00540 PE=3 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 4.2e-107
Identity = 185/195 (94.87%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNRSYS+V GGRTKEECEDMIRRS RTPMVKFLMEHLEKSGCGIGDRFIK
Sbjct: 1   MAEESTPEPGSNRSYSSVTGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHC+KQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANC HHA
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKS+ ANPYC E AAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLTANPYCPEPAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WD+CYNDTQPFDRAP
Sbjct: 181 WDICYNDTQPFDRAP 195

[Close]

BLAST of Lsi02G016110 vs. NCBI nr
Match: XP_038890541.1 (mitochondrial inner membrane protease ATP23 [Benincasa hispida])

HSP 1 Score: 413.3 bits (1061), Expect = 1.2e-111
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK
Sbjct: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Lsi02G016110 vs. NCBI nr
Match: XP_022133506.1 (mitochondrial inner membrane protease ATP23 [Momordica charantia])

HSP 1 Score: 403.7 bits (1036), Expect = 9.2e-109
Identity = 188/195 (96.41%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEES PEPGSNRSYSA+NGGRTKEECEDMIRRS RTPMVKFL+EHLEKSGCGIGD+FIK
Sbjct: 1   MAEESAPEPGSNRSYSAINGGRTKEECEDMIRRSLRTPMVKFLLEHLEKSGCGIGDKFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRG++KLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGYVKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Lsi02G016110 vs. NCBI nr
Match: XP_011655379.1 (mitochondrial inner membrane protease ATP23 [Cucumis sativus] >KGN51337.1 hypothetical protein Csa_008937 [Cucumis sativus])

HSP 1 Score: 403.3 bits (1035), Expect = 1.2e-108
Identity = 188/195 (96.41%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNRSYS+VNGGRTKEECEDMIRRS RTPMVKFLMEHLEKSGCGIGDRFIK
Sbjct: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHC+KQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANC HHA
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKS++ANPYC EAAAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANPYCPEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Lsi02G016110 vs. NCBI nr
Match: XP_022922282.1 (mitochondrial inner membrane protease ATP23 [Cucurbita moschata] >XP_022990978.1 mitochondrial inner membrane protease ATP23 [Cucurbita maxima] >XP_023526059.1 mitochondrial inner membrane protease ATP23 [Cucurbita pepo subsp. pepo] >KAG6602399.1 hypothetical protein SDJN03_07632, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033074.1 ATP23 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 401.7 bits (1031), Expect = 3.5e-108
Identity = 188/195 (96.41%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNR YSAVNGGRTKEECEDMIRRS RTPMVKFLMEHLEKSGCGIGD+FIK
Sbjct: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVC NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRGF+KLRGHEQECVRRRVMKSVIANPYCSEAAA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Lsi02G016110 vs. NCBI nr
Match: XP_008458847.1 (PREDICTED: mitochondrial inner membrane protease ATP23 [Cucumis melo] >KAA0037615.1 mitochondrial inner membrane protease ATP23 [Cucumis melo var. makuwa] >TYK09357.1 mitochondrial inner membrane protease ATP23 [Cucumis melo var. makuwa])

HSP 1 Score: 397.1 bits (1019), Expect = 8.6e-107
Identity = 185/195 (94.87%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           MAEESTPEPGSNRSYS+V GGRTKEECEDMIRRS RTPMVKFLMEHLEKSGCGIGDRFIK
Sbjct: 1   MAEESTPEPGSNRSYSSVTGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHC+KQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANC HHA
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKS+ ANPYC E AAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLTANPYCPEPAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WD+CYNDTQPFDRAP
Sbjct: 181 WDICYNDTQPFDRAP 195

[Close]

BLAST of Lsi02G016110 vs. TAIR 10
Match: AT3G03420.1 (Ku70-binding family protein )

HSP 1 Score: 306.6 bits (784), Expect = 1.4e-83
Identity = 139/195 (71.28%), Postives = 164/195 (84.10%), Query Frame = 0


Query: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60
           M + + P  GS  +  A   G++ +EC+DMIRRSFR P+VKFLME +EKSGC +GD F+K
Sbjct: 1   MEDAAAPNSGSEFNPGA-RRGKSIDECQDMIRRSFRNPIVKFLMEQMEKSGCRVGDNFVK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AV C   ++GGY +G GI VCSN++ IQDEVNQVVIHELIHA+D+CRA NLDW NCAHHA
Sbjct: 61  AVVCTGPVAGGYTKGRGITVCSNYLTIQDEVNQVVIHELIHAYDECRAKNLDWTNCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180
           CSEIRAGHLSGDCH+KRELLRGF+KLRGHEQEC++RRV+KS+  NPYCSE AAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHFKRELLRGFIKLRGHEQECIKRRVLKSLRGNPYCSEVAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WD CYNDT+PFDRAP
Sbjct: 181 WDTCYNDTKPFDRAP 194

The following BLAST results are available for this feature:

BLAST of Lsi02G016110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CQ26	4.5e-34	41.18	Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neof...	[more]
P0CQ27	5.9e-34	41.18	Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neof...	[more]
Q7T0P7	3.2e-32	42.53	Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus laevis OX=8355 GN...	[more]
Q6C253	7.2e-32	42.77	Mitochondrial inner membrane protease ATP23 OS=Yarrowia lipolytica (strain CLIB ...	[more]
A4IGF3	3.6e-31	41.54	Mitochondrial inner membrane protease ATP23 homolog OS=Danio rerio OX=7955 GN=at...	[more]

BLAST of Lsi02G016110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVA8	4.5e-109	96.41	Mitochondrial inner membrane protease ATP23 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A0A0KSC7	5.8e-109	96.41	Mitochondrial inner membrane protease ATP23 OS=Cucumis sativus OX=3659 GN=Csa_5G...	[more]
A0A6J1JUV4	1.7e-108	96.41	Mitochondrial inner membrane protease ATP23 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1E2T7	1.7e-108	96.41	Mitochondrial inner membrane protease ATP23 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5D3CBI5	4.2e-107	94.87	Mitochondrial inner membrane protease ATP23 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Lsi02G016110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890541.1	1.2e-111	100.00	mitochondrial inner membrane protease ATP23 [Benincasa hispida]	[more]
XP_022133506.1	9.2e-109	96.41	mitochondrial inner membrane protease ATP23 [Momordica charantia]	[more]
XP_011655379.1	1.2e-108	96.41	mitochondrial inner membrane protease ATP23 [Cucumis sativus] >KGN51337.1 hypoth...	[more]
XP_022922282.1	3.5e-108	96.41	mitochondrial inner membrane protease ATP23 [Cucurbita moschata] >XP_022990978.1...	[more]
XP_008458847.1	8.6e-107	94.87	PREDICTED: mitochondrial inner membrane protease ATP23 [Cucumis melo] >KAA003761...	[more]

BLAST of Lsi02G016110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03420.1	1.4e-83	71.28	Ku70-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019165	Peptidase M76, ATP23	PFAM	PF09768	Peptidase_M76	coord: 25..192 e-value: 7.5E-58 score: 195.1
IPR019165	Peptidase M76, ATP23	PANTHER	PTHR21711	MITOCHONDRIAL INNER MEMBRANE PROTEASE	coord: 12..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G016110.1	Lsi02G016110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034982	mitochondrial protein processing
biological_process	GO:0033615	mitochondrial proton-transporting ATP synthase complex assembly
cellular_component	GO:0031314	extrinsic component of mitochondrial inner membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004222	metalloendopeptidase activity